Genomic map of Providencia phage Redjac (NC_018832)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018832
Definition
Providencia phage Redjac, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
58104
Host Name
Providencia stuartii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
41
%GC
49.49
Number of singletons
4
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006905998.1 NC_018832_p14 DNA methyltransferase phrog_111 DNA methyltransferase other -1 17568 18260
YP_006905992.1 NC_018832_p8 hypothetical protein phrog_7226 unknown function unknown function 1 10326 12320
YP_006905989.1 NC_018832_p5 hypothetical protein phrog_2448 unknown function unknown function 1 7090 8052
YP_006906014.1 NC_018832_p30 DNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 39599 41107
YP_006906011.1 NC_018832_p27 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 35187 36533
YP_006906005.1 NC_018832_p21 hypothetical protein phrog_4190 unknown function unknown function 1 25766 26308
YP_006906002.1 NC_018832_p18 recombination-associated protein phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism -1 21275 22447
YP_006905999.1 NC_018832_p15 hypothetical protein phrog_8386 unknown function unknown function -1 18257 19312
YP_006906003.1 NC_018832_p19 hypothetical protein singleton unknown function unknown function -1 23590 23841
YP_006905986.1 NC_018832_p2 tail assembly protein phrog_6284 tail protein tail 1 1467 5330
YP_006906021.1 NC_018832_p37 hypothetical protein phrog_4858 unknown function unknown function 1 48859 49221
YP_006906013.1 NC_018832_p29 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 37256 39292
YP_006906022.1 NC_018832_p38 hypothetical protein phrog_27 tail completion or Neck1 protein connector 1 49221 49847
YP_006906017.1 NC_018832_p33 ClpP phrog_53 head maturation protease head and packaging 1 45698 46993
YP_006905993.1 NC_018832_p9 lysis protein A phrog_873 endolysin head and packaging 1 12716 13429
YP_006906023.1 NC_018832_p39 phage structural protein phrog_807 major tail protein with Ig-like domain tail 1 50366 51505
YP_006905988.1 NC_018832_p4 hypothetical protein phrog_2448 unknown function unknown function 1 6073 7080
YP_006906007.1 NC_018832_p23 hypothetical protein singleton unknown function unknown function 1 28608 28790
YP_006906008.1 NC_018832_p24 DNA primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 31306 33894
YP_006906001.1 NC_018832_p17 hypothetical protein phrog_7587 unknown function unknown function -1 20759 21037
YP_006905990.1 NC_018832_p6 hypothetical protein phrog_2448 unknown function unknown function 1 8065 9084
YP_006906024.1 NC_018832_p40 pre-tape measure frameshift protein phrog_11703 tail length tape measure protein tail 1 51606 52291
YP_006906000.1 NC_018832_p16 hypothetical protein phrog_6886 unknown function unknown function -1 19790 20530
YP_006905987.1 NC_018832_p3 tail fiber protein phrog_7049 tail fiber protein tail 1 5323 6063
YP_006906009.1 NC_018832_p25 transcriptional regulator phrog_7401 unknown function unknown function -1 33891 34172
YP_006906004.1 NC_018832_p20 hypothetical protein singleton unknown function unknown function 1 24911 25153
YP_006906018.1 NC_018832_p34 phage structural protein phrog_49 head decoration head and packaging 1 47013 47423
YP_006906016.1 NC_018832_p32 phage portal protein phrog_21 portal protein head and packaging 1 43935 45701
YP_006906020.1 NC_018832_p36 hypothetical protein phrog_7559 unknown function unknown function 1 48584 48856
YP_006905985.1 NC_018832_p1 conserved tail assembly protein phrog_778 tail assembly protein tail 1 197 1015
YP_006905995.1 NC_018832_p11 hypothetical protein phrog_8264 unknown function unknown function -1 14302 14691
YP_006905991.1 NC_018832_p7 hypothetical protein phrog_10924 unknown function unknown function 1 9096 10316
YP_006906025.1 NC_018832_p41 tape measure protein phrog_2335 tail length tape measure protein tail 1 52284 56591
YP_006906010.1 NC_018832_p26 hypothetical protein phrog_7721 unknown function unknown function 1 34433 34810
YP_006906019.1 NC_018832_p35 capsid protein phrog_29 major head protein head and packaging 1 47437 48510
YP_006905996.1 NC_018832_p12 exonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 15096 15656
YP_006906006.1 NC_018832_p22 hypothetical protein singleton unknown function unknown function 1 28077 28178
YP_006905994.1 NC_018832_p10 endolysin like protein phrog_1026 Rz-like spanin lysis 1 13426 13680
YP_006905997.1 NC_018832_p13 hypothetical protein phrog_8209 unknown function unknown function -1 16196 17230
YP_006906012.1 NC_018832_p28 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 36582 37193
YP_006906015.1 NC_018832_p31 terminase large subunit phrog_15 terminase large subunit head and packaging 1 41692 43767