Genomic map of Pectobacterium phage My1 (NC_018837)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018837
Definition
Pectobacterium phage My1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Mccorquodalevirinae; Myunavirus; Pectobacterium virus My1.
DB of origin
REFSEQ
Length
122024
Host Name
Pectobacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
149
%GC
40.61
Number of singletons
30
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006906256.1 NC_018837_p4 hypothetical protein singleton unknown function unknown function -1 1555 1818
YP_006906372.1 NC_018837_p120 D11 protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 74500 75264
YP_006906345.1 NC_018837_p93 hypothetical protein phrog_28253 unknown function unknown function -1 52027 52260
YP_006906287.1 NC_018837_p35 hypothetical protein singleton unknown function unknown function -1 20117 20380
YP_006906294.1 NC_018837_p42 hypothetical protein phrog_812 Rz-like spanin lysis -1 23695 24048
YP_006906253.1 NC_018837_p1 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 103 804
YP_006906328.1 NC_018837_p76 hypothetical protein phrog_5032 unknown function unknown function -1 39820 40365
YP_006906331.1 NC_018837_p79 cell wall hydrolase phrog_938 endolysin lysis -1 42073 42525
YP_006906373.1 NC_018837_p121 recombination endonuclease subunit D12 phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 75312 76301
YP_006906316.1 NC_018837_p64 hypothetical protein phrog_18736 unknown function unknown function -1 32895 33248
YP_006906270.1 NC_018837_p18 hypothetical protein phrog_6741 unknown function unknown function -1 8918 9436
YP_006906338.1 NC_018837_p86 hypothetical protein phrog_4593 unknown function unknown function -1 45646 45921
YP_006906257.1 NC_018837_p5 A1 protein phrog_1745 DNA transfer protein other -1 1809 3482
YP_006906311.1 NC_018837_p59 hypothetical protein phrog_7572 unknown function unknown function -1 30971 31330
YP_006906265.1 NC_018837_p13 hypothetical protein singleton unknown function unknown function -1 6543 6683
YP_006906399.1 NC_018837_p147 hypothetical protein phrog_2008 unknown function unknown function 1 108020 108268
YP_006906362.1 NC_018837_p110 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism 1 64045 64557
YP_006906394.1 NC_018837_p142 prohead protease phrog_80 head maturation protease head and packaging -1 103224 103835
YP_006906322.1 NC_018837_p70 hypothetical protein phrog_944 membrane protein moron, auxiliary metabolic gene and host takeover -1 36496 36969
YP_006906365.1 NC_018837_p113 D5 protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 66455 67213
YP_006906334.1 NC_018837_p82 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 43817 44497
YP_006906353.1 NC_018837_p101 hypothetical protein singleton unknown function unknown function 1 57529 57801
YP_006906368.1 NC_018837_p116 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 69702 72257
YP_006906296.1 NC_018837_p44 hypothetical protein phrog_4243 unknown function unknown function -1 24383 25060
YP_006906261.1 NC_018837_p9 hypothetical protein singleton unknown function unknown function -1 5145 5411
YP_006906300.1 NC_018837_p48 hypothetical protein phrog_4760 unknown function unknown function -1 26067 26294
YP_006906383.1 NC_018837_p131 tail protein pb3 phrog_31 central tail fiber J tail -1 89799 92567
YP_006906356.1 NC_018837_p104 hypothetical protein phrog_5291 unknown function unknown function 1 61565 61804
YP_006906357.1 NC_018837_p105 D2 protein phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 61842 62531
YP_006906295.1 NC_018837_p43 hypothetical protein phrog_739 Rz-like spanin lysis -1 24015 24386
YP_006906277.1 NC_018837_p25 hypothetical protein singleton unknown function unknown function -1 15266 15688
YP_006906336.1 NC_018837_p84 hypothetical protein phrog_4516 unknown function unknown function -1 44760 45251
YP_006906389.1 NC_018837_p137 major tail protein phrog_3575 major tail protein tail -1 98835 99965
YP_006906302.1 NC_018837_p50 hypothetical protein phrog_7065 unknown function unknown function -1 26677 26919
YP_006906312.1 NC_018837_p60 hypothetical protein singleton unknown function unknown function -1 31330 31524
YP_006906284.1 NC_018837_p32 serine/threonine protein phosphatase 1 phrog_547 phosphoesterase other -1 18437 19051
YP_006906363.1 NC_018837_p111 NAD-dependent DNA ligase subunit A phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 64541 65521
YP_006906303.1 NC_018837_p51 hypothetical protein singleton unknown function unknown function -1 27413 27619
YP_006906281.1 NC_018837_p29 hypothetical protein phrog_4804 unknown function unknown function -1 17023 17259
YP_006906387.1 NC_018837_p135 hypothetical protein phrog_313 Tail assembly chaperone tail -1 97557 97952
YP_006906263.1 NC_018837_p11 hypothetical protein phrog_3747 unknown function unknown function -1 5805 6077
YP_006906269.1 NC_018837_p17 hypothetical protein phrog_4379 unknown function unknown function -1 8556 8915
YP_006906317.1 NC_018837_p65 hypothetical protein phrog_6955 unknown function unknown function -1 33795 34235
YP_006906275.1 NC_018837_p23 hypothetical protein phrog_30674 unknown function unknown function -1 13663 14970
YP_006906276.1 NC_018837_p24 hypothetical protein singleton unknown function unknown function -1 14970 15266
YP_006906262.1 NC_018837_p10 hypothetical protein singleton unknown function unknown function -1 5404 5709
YP_006906392.1 NC_018837_p140 hypothetical protein phrog_442 head-tail adaptor connector -1 101248 101760
YP_006906393.1 NC_018837_p141 major head protein precursor phrog_10 major head protein head and packaging -1 101818 103224
YP_006906391.1 NC_018837_p139 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 100484 101248
YP_006906330.1 NC_018837_p78 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 41615 42064
YP_006906361.1 NC_018837_p109 hypothetical protein phrog_2831 unknown function unknown function 1 63696 64016
YP_006906325.1 NC_018837_p73 hypothetical protein phrog_26404 unknown function unknown function -1 38641 38802
YP_006906371.1 NC_018837_p119 hypothetical protein phrog_4258 unknown function unknown function 1 74145 74507
YP_006906332.1 NC_018837_p80 hypothetical protein phrog_1491 tail fiber protein tail -1 42922 43560
YP_006906380.1 NC_018837_p128 phage tail protein 2 phrog_34807 collar tail protein for L-shaped tail fibre attachment tail -1 84355 84540
YP_006906384.1 NC_018837_p132 hypothetical protein phrog_1302 distal tail protein tail -1 92624 93244
YP_006906273.1 NC_018837_p21 hypothetical protein singleton unknown function unknown function 1 10968 11192
YP_006906305.1 NC_018837_p53 hypothetical protein phrog_17087 unknown function unknown function -1 28209 28529
YP_006906271.1 NC_018837_p19 hypothetical protein phrog_4263 unknown function unknown function -1 9525 10487
YP_006906323.1 NC_018837_p71 hypothetical protein phrog_27815 unknown function unknown function -1 37433 37750
YP_006906313.1 NC_018837_p61 hypothetical protein phrog_30595 unknown function unknown function -1 31796 31954
YP_006906335.1 NC_018837_p83 hypothetical protein phrog_4586 unknown function unknown function -1 44520 44720
YP_006906370.1 NC_018837_p118 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 72751 74106
YP_006906286.1 NC_018837_p34 serine/threonine protein phosphatase 2 phrog_246 NinI-like serine-threonine phosphatase other -1 19278 20120
YP_006906259.1 NC_018837_p7 hypothetical protein singleton unknown function unknown function -1 3810 4052
YP_006906304.1 NC_018837_p52 hypothetical protein singleton unknown function unknown function -1 27871 28209
YP_006906298.1 NC_018837_p46 hypothetical protein phrog_4821 unknown function unknown function -1 25433 25777
YP_006906291.1 NC_018837_p39 holin phrog_860 holin lysis -1 21601 22227
YP_006906388.1 NC_018837_p136 minor tail protein phrog_3889 base plate tail tube protein tail -1 97945 98832
YP_006906354.1 NC_018837_p102 hypothetical protein phrog_2502 unknown function unknown function 1 57785 58195
YP_006906401.1 NC_018837_p149 hypothetical protein singleton unknown function unknown function 1 108700 109011
YP_006906360.1 NC_018837_p108 ssDNA-binding transcriptional regulator phrog_4053 transcriptional regulator transcription regulation 1 63343 63642
YP_006906319.1 NC_018837_p67 hypothetical protein phrog_19286 unknown function unknown function -1 35239 35391
YP_006906283.1 NC_018837_p31 protein 2C phrog_3880 unknown function unknown function -1 17905 18162
YP_006906278.1 NC_018837_p26 hypothetical protein phrog_4605 unknown function unknown function -1 15685 16104
YP_006906279.1 NC_018837_p27 hypothetical protein phrog_4905 unknown function unknown function -1 16145 16522
YP_006906343.1 NC_018837_p91 ribonucleotide reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 48471 49610
YP_006906254.1 NC_018837_p2 hypothetical protein singleton unknown function unknown function -1 807 1085
YP_006906306.1 NC_018837_p54 hypothetical protein phrog_5032 unknown function unknown function -1 28723 29262
YP_006906364.1 NC_018837_p112 NAD-dependent DNA ligase subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 65692 66462
YP_006906282.1 NC_018837_p30 hypothetical protein singleton unknown function unknown function -1 17267 17557
YP_006906255.1 NC_018837_p3 hypothetical protein phrog_29591 unknown function unknown function -1 1148 1540
YP_006906339.1 NC_018837_p87 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 46312 46788
YP_006906366.1 NC_018837_p114 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 67307 68764
YP_006906396.1 NC_018837_p144 portal protein phrog_12 portal protein head and packaging -1 104605 105822
YP_006906376.1 NC_018837_p124 flap endonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 78629 79495
YP_006906375.1 NC_018837_p123 D14 protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 78123 78608
YP_006906309.1 NC_018837_p57 hypothetical protein phrog_9814 unknown function unknown function -1 30499 30690
YP_006906285.1 NC_018837_p33 hypothetical protein phrog_6073 Rz-like spanin lysis -1 19054 19275
YP_006906385.1 NC_018837_p133 pore-forming tail tip protein phrog_3779 tail length tape measure protein tail -1 93352 97029
YP_006906400.1 NC_018837_p148 hypothetical protein singleton unknown function unknown function 1 108279 108707
YP_006906266.1 NC_018837_p14 hypothetical protein phrog_7884 unknown function unknown function -1 6793 6990
YP_006906358.1 NC_018837_p106 D3 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 62613 63017
YP_006906280.1 NC_018837_p28 hypothetical protein phrog_4215 unknown function unknown function -1 16473 16904
YP_006906274.1 NC_018837_p22 hypothetical protein singleton unknown function unknown function 1 11342 11545
YP_006906342.1 NC_018837_p90 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 47833 48474
YP_006906344.1 NC_018837_p92 ribonucleoside-diphosphate reductase alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 49697 51976
YP_006906349.1 NC_018837_p97 hypothetical protein singleton unknown function unknown function 1 55903 56121
YP_006906398.1 NC_018837_p146 hypothetical protein phrog_3802 terminase small subunit head and packaging -1 107423 107902
YP_006906307.1 NC_018837_p55 hypothetical protein singleton unknown function unknown function -1 29630 29917
YP_006906301.1 NC_018837_p49 hypothetical protein singleton unknown function unknown function -1 26385 26684
YP_006906381.1 NC_018837_p129 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover -1 84551 85495
YP_006906297.1 NC_018837_p45 hypothetical protein phrog_5486 unknown function unknown function -1 25117 25446
YP_006906290.1 NC_018837_p38 endolysin phrog_465 endolysin lysis -1 21191 21604
YP_006906327.1 NC_018837_p75 hypothetical protein phrog_18988 unknown function unknown function -1 39409 39756
YP_006906382.1 NC_018837_p130 tail protein pb4 phrog_38396 tail protein tail -1 85495 89802
YP_006906395.1 NC_018837_p143 tail protein phrog_34952 tail protein tail -1 103859 104608
YP_006906264.1 NC_018837_p12 hypothetical protein singleton unknown function unknown function -1 6385 6528
YP_006906350.1 NC_018837_p98 Sir2-like protein phrog_2162 Sir2 (NAD-dependent deacetylase) DNA, RNA and nucleotide metabolism 1 56114 56869
YP_006906272.1 NC_018837_p20 hypothetical protein singleton unknown function unknown function 1 10609 10971
YP_006906355.1 NC_018837_p103 replication origin binding protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 58786 61596
YP_006906289.1 NC_018837_p37 hypothetical protein phrog_4328 unknown function unknown function -1 20758 21120
YP_006906367.1 NC_018837_p115 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 68761 69636
YP_006906314.1 NC_018837_p62 hypothetical protein phrog_9447 unknown function unknown function -1 31954 32289
YP_006906369.1 NC_018837_p117 hypothetical protein phrog_4386 unknown function unknown function 1 72254 72754
YP_006906315.1 NC_018837_p63 hypothetical protein phrog_6060 anti-termination protein Q-like transcription regulation -1 32291 32476
YP_006906267.1 NC_018837_p15 hypothetical protein singleton unknown function unknown function -1 8019 8237
YP_006906324.1 NC_018837_p72 hypothetical protein phrog_4551 unknown function unknown function -1 38342 38641
YP_006906341.1 NC_018837_p89 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 47000 47833
YP_006906293.1 NC_018837_p41 deoxynucleoside-5'-monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 22977 23741
YP_006906308.1 NC_018837_p56 hypothetical protein phrog_5018 unknown function unknown function -1 30085 30486
YP_006906260.1 NC_018837_p8 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 4107 4523
YP_006906258.1 NC_018837_p6 hypothetical protein phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 3571 3813
YP_006906351.1 NC_018837_p99 hypothetical protein singleton unknown function unknown function 1 56854 57042
YP_006906346.1 NC_018837_p94 PhoH-like protein phrog_170 PhoH-like phosphate starvation-inducible other -1 52401 53150
YP_006906390.1 NC_018837_p138 hypothetical protein phrog_3907 tail terminator connector -1 99982 100482
YP_006906359.1 NC_018837_p107 hypothetical protein phrog_3696 unknown function unknown function 1 63027 63341
YP_006906318.1 NC_018837_p66 hypothetical protein phrog_3260 unknown function unknown function -1 34245 34448
YP_006906329.1 NC_018837_p77 hypothetical protein phrog_464 unknown function unknown function -1 41346 41618
YP_006906397.1 NC_018837_p145 terminase large subunit phrog_2 terminase large subunit head and packaging -1 106110 107423
YP_006906352.1 NC_018837_p100 hypothetical protein phrog_1818 unknown function unknown function 1 56993 57529
YP_006906288.1 NC_018837_p36 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 20478 20768
YP_006906310.1 NC_018837_p58 hypothetical protein singleton unknown function unknown function -1 30790 30999
YP_006906378.1 NC_018837_p126 YadA domain-containing protein singleton unknown function unknown function -1 79982 83698
YP_006906321.1 NC_018837_p69 hypothetical protein phrog_21567 unknown function unknown function -1 36304 36492
YP_006906337.1 NC_018837_p85 hypothetical protein phrog_1479 unknown function unknown function -1 45327 45644
YP_006906340.1 NC_018837_p88 hypothetical protein singleton unknown function unknown function -1 46788 47000
YP_006906268.1 NC_018837_p16 hypothetical protein phrog_6973 unknown function unknown function -1 8230 8421
YP_006906347.1 NC_018837_p95 anaerobic ribonucleoside triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 53498 55351
YP_006906348.1 NC_018837_p96 hypothetical protein singleton unknown function unknown function 1 55449 55739
YP_006906320.1 NC_018837_p68 hypothetical protein phrog_7042 unknown function unknown function -1 35958 36236
YP_006906299.1 NC_018837_p47 hypothetical protein phrog_2855 unknown function unknown function -1 25774 26070
YP_006906326.1 NC_018837_p74 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 39018 39407
YP_006906333.1 NC_018837_p81 hypothetical protein singleton unknown function unknown function -1 43605 43757
YP_006906386.1 NC_018837_p134 hypothetical protein phrog_3914 tail assembly chaperone tail -1 97121 97462
YP_006906374.1 NC_018837_p122 recombination endonuclease subunit D13 phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 76282 78126
YP_006906377.1 NC_018837_p125 deoxyUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 79485 79928
YP_006906292.1 NC_018837_p40 ATP-dependent Clp protease phrog_1827 ATP-dependent protease other -1 22397 22954
YP_006906379.1 NC_018837_p127 phage tail protein 1 phrog_1084 unknown function unknown function -1 83688 84077