Genomic map of Salmonella phage SSU5 (NC_018843)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018843
Definition
Salmonella phage SSU5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nickievirus; unclassified Nickievirus.
DB of origin
REFSEQ
Length
103299
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
130
%GC
51.1
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006906756.1 NC_018843_p124 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 98193 99752
YP_006906743.1 NC_018843_p111 hypothetical protein phrog_15489 unknown function unknown function 1 92199 92414
YP_006906652.1 NC_018843_p20 phage tail protein phrog_31 central tail fiber J tail 1 17749 21906
YP_006906758.1 NC_018843_p126 ParB-like nuclease domain-containing protein phrog_930 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 100515 101183
YP_006906638.1 NC_018843_p6 Ig-like domain-containing protein phrog_215 structural protein with Ig domain head and packaging 1 5537 6460
YP_006906700.1 NC_018843_p68 Cre-associated protein phrog_804 unknown function unknown function 1 58606 58818
YP_006906687.1 NC_018843_p55 hypothetical protein phrog_5923 unknown function unknown function -1 51238 51474
YP_006906718.1 NC_018843_p86 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 75676 76233
YP_006906645.1 NC_018843_p13 hypothetical protein phrog_893 unknown function unknown function 1 9943 10260
YP_006906654.1 NC_018843_p22 receptor-recognising phage tail fiber adhesin phrog_1121 tail fiber adhesin tail 1 25776 26312
YP_006906729.1 NC_018843_p97 Eaa protein phrog_10451 unknown function unknown function 1 84923 85204
YP_006906690.1 NC_018843_p58 DNA polymerase I phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 53367 54311
YP_006906707.1 NC_018843_p75 exonuclease subunit 2 phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 64530 66446
YP_006906730.1 NC_018843_p98 hypothetical protein phrog_16975 unknown function unknown function 1 85207 85578
YP_006906735.1 NC_018843_p103 hypothetical protein phrog_2100 unknown function unknown function 1 88043 88309
YP_006906721.1 NC_018843_p89 hypothetical protein phrog_5343 unknown function unknown function 1 78479 78709
YP_006906673.1 NC_018843_p41 hypothetical protein phrog_22938 unknown function unknown function -1 37022 37987
YP_006906641.1 NC_018843_p9 hypothetical protein phrog_911 unknown function unknown function 1 7869 8213
YP_006906643.1 NC_018843_p11 hypothetical protein phrog_921 unknown function unknown function 1 8679 9062
YP_006906712.1 NC_018843_p80 phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein phrog_671 nucleotide pyrophosphohydrolase other 1 71489 72358
YP_006906694.1 NC_018843_p62 SPFH domain / band 7 protein phrog_200 lipoprotein other 1 55951 56781
YP_006906667.1 NC_018843_p35 hypothetical protein singleton unknown function unknown function 1 31523 32167
YP_006906678.1 NC_018843_p46 hypothetical protein phrog_4054 unknown function unknown function 1 41110 41322
YP_006906708.1 NC_018843_p76 hypothetical protein phrog_2117 unknown function unknown function 1 66436 67182
YP_006906727.1 NC_018843_p95 DNA modification methylase phrog_6263 DNA methyltransferase other 1 82493 84178
YP_006906664.1 NC_018843_p32 hypothetical protein phrog_3307 unknown function unknown function 1 29641 30342
YP_006906646.1 NC_018843_p14 hypothetical protein phrog_1131 unknown function unknown function 1 10377 10610
YP_006906716.1 NC_018843_p84 hypothetical protein phrog_168 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 74539 75183
YP_006906647.1 NC_018843_p15 tail tape measure protein phrog_1292 tail length tape measure protein tail 1 10618 15198
YP_006906717.1 NC_018843_p85 hypothetical protein phrog_5373 unknown function unknown function 1 75247 75666
YP_006906682.1 NC_018843_p50 porphyrin biosynthetic protein phrog_249 porphyrin biosynthesis moron, auxiliary metabolic gene and host takeover 1 45204 46439
YP_006906675.1 NC_018843_p43 hypothetical protein phrog_5055 unknown function unknown function 1 39117 39593
YP_006906658.1 NC_018843_p26 holin phrog_5093 unknown function unknown function 1 27556 27879
YP_006906637.1 NC_018843_p5 major capsid protein phrog_212 major head protein head and packaging 1 4587 5462
YP_006906681.1 NC_018843_p49 porphyrin biosynthetic protein phrog_1576 unknown function unknown function 1 42761 45106
YP_006906737.1 NC_018843_p105 hypothetical protein phrog_5003 unknown function unknown function 1 88628 88948
YP_006906738.1 NC_018843_p106 hypothetical protein singleton unknown function unknown function 1 88958 89149
YP_006906755.1 NC_018843_p123 hypothetical protein phrog_1466 unknown function unknown function -1 97912 98190
YP_006906680.1 NC_018843_p48 hypothetical protein phrog_4507 unknown function unknown function 1 41471 41776
YP_006906731.1 NC_018843_p99 guanosine polyphosphate pyrophospho hydrolase/synthetase phrog_990 metal-dependent phosphohydrolase other 1 85670 86311
YP_006906695.1 NC_018843_p63 NinX-like protein phrog_444 unknown function unknown function 1 56945 57316
YP_006906644.1 NC_018843_p12 Ig-like domain-containing protein phrog_1280 Ig domain containing protein other 1 9137 9883
YP_006906714.1 NC_018843_p82 hypothetical protein phrog_5387 unknown function unknown function 1 73653 74066
YP_006906711.1 NC_018843_p79 ribonucleotide-diphosphate reductase, beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 70264 71406
YP_006906709.1 NC_018843_p77 ribonuclease H-like domain-containing protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 67194 67763
YP_006906722.1 NC_018843_p90 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism 1 79147 79911
YP_006906705.1 NC_018843_p73 exonuclease subunit 1 phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 63215 64300
YP_006906659.1 NC_018843_p27 endolysin phrog_873 endolysin head and packaging 1 27892 28584
YP_006906697.1 NC_018843_p65 hypothetical protein phrog_2209 unknown function unknown function 1 57779 58054
YP_006906725.1 NC_018843_p93 phage antirepressor family protein phrog_63 anti-repressor Ant transcription regulation 1 80936 81670
YP_006906656.1 NC_018843_p24 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 26652 27218
YP_006906661.1 NC_018843_p29 Rz1 protein phrog_1275 Rz-like spanin lysis 1 28770 29000
YP_006906662.1 NC_018843_p30 Rz1 protein phrog_1275 Rz-like spanin lysis 1 28854 29000
YP_006906692.1 NC_018843_p60 RecA-like recombinase phrog_97 UvsX-like recombinase other 1 54580 55656
YP_006906653.1 NC_018843_p21 phage tail fiber protein phrog_22609 tail fiber protein tail 1 21994 25776
YP_006906650.1 NC_018843_p18 phage tail protein phrog_30 minor tail protein tail 1 16356 17153
YP_006906688.1 NC_018843_p56 hypothetical protein phrog_2058 unknown function unknown function 1 51730 52161
YP_006906636.1 NC_018843_p4 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 3664 4560
YP_006906719.1 NC_018843_p87 hypothetical protein phrog_5235 unknown function unknown function 1 76655 77497
YP_006906677.1 NC_018843_p45 hypothetical protein phrog_4381 unknown function unknown function 1 40950 41126
YP_006906672.1 NC_018843_p40 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 35905 37020
YP_006906689.1 NC_018843_p57 hypothetical protein phrog_1192 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 52281 53306
YP_006906635.1 NC_018843_p3 hypothetical protein phrog_145 portal protein head and packaging 1 2067 3641
YP_006906698.1 NC_018843_p66 hypothetical protein phrog_2535 unknown function unknown function 1 58095 58274
YP_006906633.1 NC_018843_p1 DNA-binding protein phrog_867 DNA binding domain DNA, RNA and nucleotide metabolism 1 134 775
YP_006906760.1 NC_018843_p128 hypothetical protein phrog_796 unknown function unknown function 1 101811 102065
YP_006906723.1 NC_018843_p91 hypothetical protein phrog_10411 unknown function unknown function 1 80054 80548
YP_006906679.1 NC_018843_p47 hypothetical protein phrog_6302 unknown function unknown function 1 41322 41474
YP_006906660.1 NC_018843_p28 hypothetical protein phrog_1026 Rz-like spanin lysis 1 28586 28837
YP_006906703.1 NC_018843_p71 GNAT family acetyltransferase phrog_15387 acetyltransferase other 1 61957 62451
YP_006906753.1 NC_018843_p121 repressor of phase 1 flagellin phrog_1444 transcriptional repressor transcription regulation -1 96897 97343
YP_006906676.1 NC_018843_p44 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 39628 40950
YP_006906710.1 NC_018843_p78 ribonucleotide-diphosphate reductase, alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 67841 70156
YP_006906757.1 NC_018843_p125 ParB-like nuclease domain-containing protein phrog_723 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 99817 100515
YP_006906666.1 NC_018843_p34 hypothetical protein phrog_5111 unknown function unknown function 1 31231 31521
YP_006906674.1 NC_018843_p42 hypothetical protein phrog_4248 unknown function unknown function 1 38241 39035
YP_006906751.1 NC_018843_p119 MIT family metal ion transporter CorA phrog_6145 MIT family metal ion transporter moron, auxiliary metabolic gene and host takeover -1 95670 95873
YP_006906748.1 NC_018843_p116 repressor-like protein singleton cro-like repressor transcription regulation -1 94056 94328
YP_006906702.1 NC_018843_p70 hypothetical protein phrog_2105 unknown function unknown function 1 61237 61881
YP_006906759.1 NC_018843_p127 ABC transporter ATP-binding protein phrog_293 ABC transporter moron, auxiliary metabolic gene and host takeover 1 101180 101818
YP_006906733.1 NC_018843_p101 hypothetical protein phrog_4675 unknown function unknown function 1 86898 87596
YP_006906747.1 NC_018843_p115 hypothetical protein phrog_1845 unknown function unknown function 1 93745 94026
YP_006906732.1 NC_018843_p100 hypothetical protein phrog_3451 unknown function unknown function 1 86308 86859
YP_006906724.1 NC_018843_p92 hypothetical protein phrog_6006 unknown function unknown function 1 80558 80746
YP_006906741.1 NC_018843_p109 hypothetical protein singleton unknown function unknown function 1 91506 91703
YP_006906726.1 NC_018843_p94 hypothetical protein phrog_5508 unknown function unknown function 1 81779 82351
YP_006906669.1 NC_018843_p37 hypothetical protein phrog_1762 unknown function unknown function 1 32677 33435
YP_006906640.1 NC_018843_p8 hypothetical protein phrog_912 unknown function unknown function 1 6938 7771
YP_006906754.1 NC_018843_p122 lipoprotein phrog_890 lipoprotein other -1 97429 97851
YP_006906704.1 NC_018843_p72 hypothetical protein phrog_18989 unknown function unknown function -1 62483 62986
YP_006906655.1 NC_018843_p23 hypothetical protein phrog_557 outer membrane protein other 1 26356 26610
YP_006906752.1 NC_018843_p120 hypothetical protein phrog_1513 unknown function unknown function -1 95924 96574
YP_006906657.1 NC_018843_p25 phage superinfection exclusion protein Cor-like protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover 1 27230 27463
YP_006906696.1 NC_018843_p64 hypothetical protein phrog_1451 unknown function unknown function 1 57300 57710
YP_006906734.1 NC_018843_p102 selenium-binding protein YdfZ phrog_16303 unknown function unknown function -1 87652 87855
YP_006906663.1 NC_018843_p31 hypothetical protein phrog_2594 unknown function unknown function 1 29186 29608
YP_006906750.1 NC_018843_p118 hypothetical protein singleton unknown function unknown function 1 95551 95673
YP_006906706.1 NC_018843_p74 hypothetical protein phrog_37951 unknown function unknown function 1 64342 64533
YP_006906651.1 NC_018843_p19 phage tail protein phrog_32 tail assembly protein tail 1 17141 17731
YP_006906744.1 NC_018843_p112 hypothetical protein phrog_6757 unknown function unknown function 1 92425 92643
YP_006906693.1 NC_018843_p61 hypothetical protein phrog_1130 membrane protein moron, auxiliary metabolic gene and host takeover 1 55747 55947
YP_006906740.1 NC_018843_p108 hypothetical protein singleton unknown function unknown function -1 90891 91130
YP_006906746.1 NC_018843_p114 hypothetical protein phrog_2473 unknown function unknown function 1 93223 93618
YP_006906728.1 NC_018843_p96 hypothetical protein phrog_8364 unknown function unknown function 1 84237 84926
YP_006906745.1 NC_018843_p113 hypothetical protein phrog_5125 unknown function unknown function 1 92784 93095
YP_006906665.1 NC_018843_p33 ParA family protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 30497 31162
YP_006906670.1 NC_018843_p38 hypothetical protein phrog_2500 unknown function unknown function 1 33631 34356
YP_006906649.1 NC_018843_p17 minor tail protein L phrog_18 minor tail protein tail 1 15665 16363
YP_006906671.1 NC_018843_p39 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 34417 35757
YP_006906701.1 NC_018843_p69 replication protein RepA phrog_775 replication helicase DNA, RNA and nucleotide metabolism -1 59428 60492
YP_006906736.1 NC_018843_p104 hypothetical protein phrog_10258 unknown function unknown function 1 88395 88631
YP_006906683.1 NC_018843_p51 hypothetical protein phrog_6337 unknown function unknown function 1 46442 46645
YP_006906691.1 NC_018843_p59 hypothetical protein phrog_2207 unknown function unknown function 1 54311 54577
YP_006906742.1 NC_018843_p110 hypothetical protein phrog_23830 unknown function unknown function -1 91811 92053
YP_006906713.1 NC_018843_p81 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 72548 73651
YP_006906739.1 NC_018843_p107 hypothetical protein phrog_12525 unknown function unknown function 1 89182 90381
YP_006906648.1 NC_018843_p16 minor tail protein M phrog_14 minor tail protein tail 1 15240 15575
YP_006906720.1 NC_018843_p88 N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 77659 78276
YP_006906684.1 NC_018843_p52 DNA polymerase III alpha subunit phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism 1 46620 50138
YP_006906634.1 NC_018843_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 778 2034
YP_006906699.1 NC_018843_p67 hypothetical protein phrog_2077 unknown function unknown function 1 58271 58606
YP_006906685.1 NC_018843_p53 hypothetical protein phrog_3258 unknown function unknown function 1 50153 50578
YP_006906668.1 NC_018843_p36 hypothetical protein phrog_17322 unknown function unknown function 1 32157 32567
YP_006906686.1 NC_018843_p54 phage transcriptional regulator AlpA-like protein phrog_2620 excisionase and transcriptional regulator integration and excision -1 50607 51185
YP_006906715.1 NC_018843_p83 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism 1 74063 74539
YP_006906639.1 NC_018843_p7 hypothetical protein phrog_916 unknown function unknown function 1 6504 6938
YP_006906749.1 NC_018843_p117 hypothetical protein phrog_1641 unknown function unknown function 1 94552 95034
YP_006906642.1 NC_018843_p10 hypothetical protein phrog_927 tail completion or Neck1 protein connector 1 8204 8677
YP_006906762.1 NC_018843_p130 hypothetical protein phrog_900 unknown function unknown function 1 102971 103237
YP_006906761.1 NC_018843_p129 ABC transporter ATP-binding protein phrog_886 ABC transporter ATP-binding subunit moron, auxiliary metabolic gene and host takeover 1 102071 102961