| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_018845 |
Definition |
Propionibacterium phage P104A, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus. |
DB of origin |
REFSEQ |
Length |
29371 |
Host Name |
Propionibacterium acnes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
53.98 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006906782.1 | NC_018845_p10 | hypothetical protein | phrog_1892 | minor tail protein | tail | 1 | 6735 | 7106 |
| YP_006906793.1 | NC_018845_p21 | holin | phrog_443 | holin | lysis | 1 | 16054 | 16452 |
| YP_006906783.1 | NC_018845_p11 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 7149 | 7781 |
| YP_006906786.1 | NC_018845_p14 | tape measure | phrog_58 | tail length tape measure protein | tail | 1 | 8498 | 11263 |
| YP_006906806.1 | NC_018845_p34 | hypothetical protein | phrog_1288 | unknown function | unknown function | -1 | 22610 | 23080 |
| YP_006906815.1 | NC_018845_p43 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26375 | 26683 |
| YP_006906817.1 | NC_018845_p45 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29007 | 29309 |
| YP_006906812.1 | NC_018845_p40 | hypothetical protein | phrog_1884 | unknown function | unknown function | -1 | 25120 | 25347 |
| YP_006906787.1 | NC_018845_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 11279 | 12226 |
| YP_006906781.1 | NC_018845_p9 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 6448 | 6738 |
| YP_006906775.1 | NC_018845_p3 | portal | phrog_104 | portal protein | head and packaging | 1 | 1886 | 3211 |
| YP_006906804.1 | NC_018845_p32 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 21345 | 21701 |
| YP_006906776.1 | NC_018845_p4 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 3215 | 3970 |
| YP_006906794.1 | NC_018845_p22 | hypothetical protein | phrog_2092 | unknown function | unknown function | -1 | 16535 | 17050 |
| YP_006906809.1 | NC_018845_p37 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24461 | 24814 |
| YP_006906797.1 | NC_018845_p25 | hypothetical protein | phrog_1340 | unknown function | unknown function | -1 | 17758 | 18078 |
| YP_006906810.1 | NC_018845_p38 | hypothetical protein | phrog_4216 | unknown function | unknown function | -1 | 24840 | 24923 |
| YP_006906807.1 | NC_018845_p35 | hypothetical protein | phrog_1890 | unknown function | unknown function | -1 | 23119 | 23523 |
| YP_006906811.1 | NC_018845_p39 | hypothetical protein | phrog_1937 | unknown function | unknown function | -1 | 24920 | 25123 |
| YP_006906805.1 | NC_018845_p33 | hypothetical protein | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 21701 | 22564 |
| YP_006906799.1 | NC_018845_p27 | hypothetical protein | phrog_1923 | unknown function | unknown function | -1 | 19125 | 19319 |
| YP_006906801.1 | NC_018845_p29 | hypothetical protein | phrog_1881 | unknown function | unknown function | -1 | 19866 | 20432 |
| YP_006906808.1 | NC_018845_p36 | hypothetical protein | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 23520 | 24461 |
| YP_006906813.1 | NC_018845_p41 | hypothetical protein | phrog_1908 | unknown function | unknown function | -1 | 25370 | 25954 |
| YP_006906778.1 | NC_018845_p6 | capsid | phrog_10 | major head protein | head and packaging | 1 | 4636 | 5583 |
| YP_006906795.1 | NC_018845_p23 | hypothetical protein | phrog_1729 | unknown function | unknown function | -1 | 17055 | 17453 |
| YP_006906790.1 | NC_018845_p18 | minor tail protein | phrog_1958 | minor tail protein | tail | 1 | 14272 | 14535 |
| YP_006906789.1 | NC_018845_p17 | minor tail protein | phrog_1910 | lectin | other | 1 | 13409 | 14227 |
| YP_006906777.1 | NC_018845_p5 | head assembly scaffold | phrog_1879 | head scaffolding protein | head and packaging | 1 | 4081 | 4629 |
| YP_006906798.1 | NC_018845_p26 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18088 | 19128 |
| YP_006906785.1 | NC_018845_p13 | tail assembly chaperone | phrog_1927 | tail assembly chaperone | tail | 1 | 7808 | 8104 |
| YP_006906780.1 | NC_018845_p8 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6094 | 6441 |
| YP_006906779.1 | NC_018845_p7 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 5613 | 6092 |
| YP_006906800.1 | NC_018845_p28 | hypothetical protein | phrog_2548 | unknown function | unknown function | -1 | 19303 | 19869 |
| YP_006906774.1 | NC_018845_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 378 | 1889 |
| YP_006906803.1 | NC_018845_p31 | hypothetical protein | phrog_2304 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20984 | 21385 |
| YP_006906784.1 | NC_018845_p12 | tail assembly chaperone | phrog_4075 | tail assembly chaperone | tail | 1 | 7808 | 8490 |
| YP_006906796.1 | NC_018845_p24 | hypothetical protein | phrog_1947 | unknown function | unknown function | -1 | 17457 | 17741 |
| YP_006906814.1 | NC_018845_p42 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26024 | 26335 |
| YP_006906773.1 | NC_018845_p1 | terminase small subunit | phrog_1897 | terminase small subunit | head and packaging | 1 | 2 | 373 |
| YP_006906791.1 | NC_018845_p19 | minor tail protein | phrog_1806 | collagen like minor tail | tail | 1 | 14538 | 15128 |
| YP_006906802.1 | NC_018845_p30 | hypothetical protein | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20476 | 21147 |
| YP_006906816.1 | NC_018845_p44 | hypothetical protein | phrog_14941 | unknown function | unknown function | -1 | 27361 | 27624 |
| YP_006906788.1 | NC_018845_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 12234 | 13391 |
| YP_006906792.1 | NC_018845_p20 | endolysin | phrog_670 | endolysin | lysis | 1 | 15184 | 16041 |