| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_018848 |
Definition |
Streptomyces phage SV1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Picardvirus; unclassified Picardvirus. |
DB of origin |
REFSEQ |
Length |
37612 |
Host Name |
Streptomyces venezuelae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
72.69 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006906994.1 | NC_018848_p52 | hypothetical protein | phrog_14382 | unknown function | unknown function | 1 | 34007 | 35269 |
| YP_006906946.1 | NC_018848_p4 | head assembly protein | phrog_12049 | head morphogenesis | head and packaging | 1 | 2988 | 4985 |
| YP_006906967.1 | NC_018848_p25 | regulatory protein, ATPase | phrog_12354 | transcriptional regulator | transcription regulation | 1 | 19341 | 19814 |
| YP_006906966.1 | NC_018848_p24 | transcriptional regulator | phrog_10886 | transcriptional regulator | transcription regulation | -1 | 17910 | 19259 |
| YP_006906978.1 | NC_018848_p36 | hypothetical protein | phrog_26351 | unknown function | unknown function | 1 | 26573 | 26809 |
| YP_006906954.1 | NC_018848_p12 | hypothetical protein | phrog_2595 | head-tail connector protein | connector | 1 | 8384 | 8800 |
| YP_006906977.1 | NC_018848_p35 | hypothetical protein | phrog_11955 | unknown function | unknown function | 1 | 25947 | 26576 |
| YP_006906974.1 | NC_018848_p32 | hypothetical protein | phrog_11833 | unknown function | unknown function | 1 | 23901 | 24287 |
| YP_006906957.1 | NC_018848_p15 | tail chaperone protein | singleton | unknown function | unknown function | 1 | 9899 | 10015 |
| YP_006906943.1 | NC_018848_p1 | large terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1 | 1263 |
| YP_006906971.1 | NC_018848_p29 | hypothetical protein | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 22711 | 23178 |
| YP_006906976.1 | NC_018848_p34 | DNA repair protein, Rad52/Rad22 superfamily | phrog_26464 | DNA repair protein | DNA, RNA and nucleotide metabolism | 1 | 24814 | 25950 |
| YP_006906993.1 | NC_018848_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33863 | 33994 |
| YP_006906972.1 | NC_018848_p30 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 23439 | 23657 |
| YP_006906944.1 | NC_018848_p2 | hypothetical protein | phrog_27842 | unknown function | unknown function | 1 | 1272 | 1496 |
| YP_006906970.1 | NC_018848_p28 | hypothetical protein | phrog_12722 | unknown function | unknown function | -1 | 22291 | 22683 |
| YP_006906969.1 | NC_018848_p27 | recombinase, serine integrase family | phrog_95 | integrase | integration and excision | -1 | 20651 | 22294 |
| YP_006906982.1 | NC_018848_p40 | hypothetical protein | phrog_17447 | unknown function | unknown function | 1 | 28800 | 29363 |
| YP_006906955.1 | NC_018848_p13 | hypothetical protein | phrog_3884 | major tail protein | tail | 1 | 8813 | 9283 |
| YP_006906965.1 | NC_018848_p23 | hypothetical protein | phrog_5225 | unknown function | unknown function | 1 | 17585 | 17851 |
| YP_006906958.1 | NC_018848_p16 | tail tape measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 10022 | 12439 |
| YP_006906988.1 | NC_018848_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31525 | 31791 |
| YP_006906975.1 | NC_018848_p33 | hypothetical protein | phrog_11881 | unknown function | unknown function | 1 | 24284 | 24817 |
| YP_006906968.1 | NC_018848_p26 | hypothetical protein | phrog_12213 | unknown function | unknown function | 1 | 19811 | 20308 |
| YP_006906996.1 | NC_018848_p54 | hypothetical protein | phrog_16946 | unknown function | unknown function | 1 | 36332 | 36841 |
| YP_006906953.1 | NC_018848_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8041 | 8391 |
| YP_006906964.1 | NC_018848_p22 | hypothetical protein | phrog_4316 | unknown function | unknown function | 1 | 17352 | 17588 |
| YP_006906945.1 | NC_018848_p3 | portal protein | phrog_533 | portal protein | head and packaging | 1 | 1493 | 2971 |
| YP_006906980.1 | NC_018848_p38 | DNA binding protein | phrog_6643 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 27169 | 28065 |
| YP_006906981.1 | NC_018848_p39 | hypothetical protein | phrog_8924 | unknown function | unknown function | 1 | 28072 | 28803 |
| YP_006906947.1 | NC_018848_p5 | hypothetical protein | phrog_13106 | unknown function | unknown function | 1 | 4991 | 5155 |
| YP_006906989.1 | NC_018848_p47 | hypothetical protein | phrog_13085 | unknown function | unknown function | 1 | 31788 | 32567 |
| YP_006906986.1 | NC_018848_p44 | hypothetical protein | phrog_18645 | unknown function | unknown function | 1 | 30720 | 31391 |
| YP_006906959.1 | NC_018848_p17 | hypothetical protein | phrog_5577 | minor tail protein | tail | 1 | 12442 | 13338 |
| YP_006906987.1 | NC_018848_p45 | hypothetical protein | phrog_25170 | unknown function | unknown function | 1 | 31388 | 31528 |
| YP_006906997.1 | NC_018848_p55 | hypothetical protein | phrog_5536 | unknown function | unknown function | 1 | 37076 | 37609 |
| YP_006906948.1 | NC_018848_p6 | hypothetical protein | phrog_8952 | unknown function | unknown function | 1 | 5267 | 6019 |
| YP_006906995.1 | NC_018848_p53 | hypothetical protein | phrog_21202 | unknown function | unknown function | 1 | 35334 | 36248 |
| YP_006906990.1 | NC_018848_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32564 | 32737 |
| YP_006906984.1 | NC_018848_p42 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29657 | 30169 |
| YP_006906979.1 | NC_018848_p37 | hypothetical protein | phrog_25823 | unknown function | unknown function | 1 | 26876 | 27172 |
| YP_006906960.1 | NC_018848_p18 | hypothetical protein | phrog_3398 | virion structural protein | head and packaging | 1 | 13354 | 14436 |
| YP_006906950.1 | NC_018848_p8 | hypothetical protein | phrog_15682 | unknown function | unknown function | 1 | 7066 | 7308 |
| YP_006906962.1 | NC_018848_p20 | hypothetical protein | phrog_9849 | unknown function | unknown function | 1 | 15575 | 16297 |
| YP_006906963.1 | NC_018848_p21 | endolysin | phrog_880 | endolysin | lysis | 1 | 16368 | 17315 |
| YP_006906952.1 | NC_018848_p10 | hypothetical protein | phrog_3881 | head-tail connector protein | connector | 1 | 7724 | 8044 |
| YP_006906973.1 | NC_018848_p31 | hypothetical protein | phrog_13097 | unknown function | unknown function | 1 | 23654 | 23839 |
| YP_006906992.1 | NC_018848_p50 | hypothetical protein | phrog_7575 | unknown function | unknown function | 1 | 32958 | 33791 |
| YP_006906956.1 | NC_018848_p14 | tail chaperone protein | phrog_6959 | tail assembly chaperone | tail | 1 | 9280 | 9765 |
| YP_006906985.1 | NC_018848_p43 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30169 | 30636 |
| YP_006906949.1 | NC_018848_p7 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 6041 | 7045 |
| YP_006906991.1 | NC_018848_p49 | hypothetical protein | phrog_25474 | unknown function | unknown function | 1 | 32734 | 32961 |
| YP_006906951.1 | NC_018848_p9 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 7311 | 7727 |
| YP_006906961.1 | NC_018848_p19 | major tail protein | phrog_1885 | minor tail protein | tail | 1 | 14433 | 15563 |
| YP_006906983.1 | NC_018848_p41 | hypothetical protein | phrog_12895 | unknown function | unknown function | 1 | 29360 | 29527 |