functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_018853 |
Definition |
Streptomyce phage TG1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Tigunavirus. |
DB of origin |
REFSEQ |
Length |
40474 |
Host Name |
Streptomyces cattleya |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
54 |
%GC |
64.64 |
Number of singletons |
7 |
Number of paralogs |
0 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_006907211.1 | NC_018853_p35 | hypothetical protein | phrog_22972 | unknown function | unknown function | 1 | 30127 | 30423 |
YP_006907226.1 | NC_018853_p50 | hypothetical protein | phrog_28723 | unknown function | unknown function | 1 | 36465 | 36695 |
YP_006907187.1 | NC_018853_p11 | tail chaperone | singleton | unknown function | unknown function | 1 | 8027 | 8179 |
YP_006907182.1 | NC_018853_p6 | hypothetical protein | phrog_22424 | unknown function | unknown function | 1 | 5464 | 5832 |
YP_006907212.1 | NC_018853_p36 | terminator overlapping CIR | singleton | unknown function | unknown function | 1 | 30416 | 30613 |
YP_006907178.1 | NC_018853_p2 | large terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2161 |
YP_006907190.1 | NC_018853_p14 | phage promoter | phrog_13571 | virion structural protein | head and packaging | 1 | 11319 | 12302 |
YP_006907214.1 | NC_018853_p38 | hypothetical protein | phrog_3641 | unknown function | unknown function | 1 | 31372 | 31563 |
YP_006907207.1 | NC_018853_p31 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 25848 | 27695 |
YP_006907217.1 | NC_018853_p41 | hypothetical protein | phrog_34435 | unknown function | unknown function | 1 | 32417 | 32617 |
YP_006907199.1 | NC_018853_p23 | hypothetical protein | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 20234 | 21076 |
YP_006907188.1 | NC_018853_p12 | tail tape measure protein | phrog_28 | tail length tape measure protein | tail | 1 | 8190 | 10379 |
YP_006907177.1 | NC_018853_p1 | small subunit terminase | phrog_83 | terminase small subunit | head and packaging | 1 | 134 | 577 |
YP_006907181.1 | NC_018853_p5 | major capsid | phrog_10 | major head protein | head and packaging | 1 | 4218 | 5384 |
YP_006907213.1 | NC_018853_p37 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 30675 | 31379 |
YP_006907179.1 | NC_018853_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2208 | 3587 |
YP_006907203.1 | NC_018853_p27 | hypothetical protein | phrog_13282 | unknown function | unknown function | 1 | 22410 | 22685 |
YP_006907193.1 | NC_018853_p17 | hypothetical protein | phrog_3671 | unknown function | unknown function | 1 | 14008 | 14298 |
YP_006907185.1 | NC_018853_p9 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7279 | 7710 |
YP_006907221.1 | NC_018853_p45 | spdB2-like protein | phrog_25954 | unknown function | unknown function | 1 | 35002 | 35694 |
YP_006907198.1 | NC_018853_p22 | Phage repressor | phrog_19947 | unknown function | unknown function | 1 | 17609 | 19930 |
YP_006907180.1 | NC_018853_p4 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 3571 | 4209 |
YP_006907194.1 | NC_018853_p18 | tail fiber protein | phrog_14726 | tail fiber protein | tail | 1 | 14295 | 15701 |
YP_006907189.1 | NC_018853_p13 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 10453 | 11319 |
YP_006907200.1 | NC_018853_p24 | hypothetical protein | phrog_37877 | unknown function | unknown function | 1 | 21126 | 21341 |
YP_006907184.1 | NC_018853_p8 | major tail protein | phrog_290 | minor tail protein | tail | 1 | 6289 | 7275 |
YP_006907202.1 | NC_018853_p26 | hypothetical protein | phrog_14927 | unknown function | unknown function | 1 | 22234 | 22410 |
YP_006907220.1 | NC_018853_p44 | hypothetical protein | phrog_25369 | unknown function | unknown function | 1 | 34263 | 34940 |
YP_006907223.1 | NC_018853_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35750 | 35992 |
YP_006907197.1 | NC_018853_p21 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 16847 | 17425 |
YP_006907183.1 | NC_018853_p7 | hypothetical protein | phrog_22587 | unknown function | unknown function | 1 | 5841 | 6278 |
YP_006907191.1 | NC_018853_p15 | hypothetical protein | phrog_1885 | minor tail protein | tail | 1 | 12342 | 13400 |
YP_006907227.1 | NC_018853_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36817 | 37047 |
YP_006907218.1 | NC_018853_p42 | hypothetical protein | phrog_5855 | unknown function | unknown function | 1 | 32746 | 33669 |
YP_006907204.1 | NC_018853_p28 | hypothetical protein | phrog_15072 | unknown function | unknown function | 1 | 22747 | 22926 |
YP_006907186.1 | NC_018853_p10 | tail chaperone | phrog_17335 | tail protein | tail | 1 | 7713 | 7976 |
YP_006907210.1 | NC_018853_p34 | hypothetical protein | phrog_1106 | unknown function | unknown function | 1 | 29721 | 30113 |
YP_006907230.1 | NC_018853_p54 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40073 | 40420 |
YP_006907206.1 | NC_018853_p30 | P4 family phage/plasmid primase | phrog_6088 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 23323 | 25728 |
YP_006907201.1 | NC_018853_p25 | recombination directionality factor | phrog_9220 | unknown function | unknown function | 1 | 21515 | 22234 |
YP_006907205.1 | NC_018853_p29 | HNH endonuclease | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 22916 | 23344 |
YP_006907196.1 | NC_018853_p20 | hypothetical protein | phrog_18607 | unknown function | unknown function | 1 | 16611 | 16790 |
YP_006907216.1 | NC_018853_p40 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 31978 | 32517 |
YP_006907209.1 | NC_018853_p33 | hypothetical protein | phrog_27777 | unknown function | unknown function | 1 | 29448 | 29615 |
YP_006907224.1 | NC_018853_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36039 | 36284 |
YP_006907219.1 | NC_018853_p43 | hypothetical protein | phrog_24218 | unknown function | unknown function | 1 | 33832 | 34179 |
YP_006907195.1 | NC_018853_p19 | endolysin | phrog_9589 | endolysin | lysis | 1 | 15771 | 16601 |
YP_006907225.1 | NC_018853_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36281 | 36472 |
YP_006907228.1 | NC_018853_p52 | recombinase, serine integrase family | phrog_95 | integrase | integration and excision | 1 | 37133 | 39013 |
YP_006907222.1 | NC_018853_p46 | regulator, GntR family | phrog_9285 | unknown function | unknown function | -1 | 35717 | 35977 |
YP_006907215.1 | NC_018853_p39 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 31560 | 31835 |
YP_006907208.1 | NC_018853_p32 | hypothetical protein | phrog_15865 | RNA polymerase sigma factor | transcription regulation | 1 | 28180 | 29352 |
YP_006907229.1 | NC_018853_p53 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 39763 | 39999 |
YP_006907192.1 | NC_018853_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13384 | 14004 |