Genomic map of Cronobacter phage vB_CsaP_GAP52 (NC_019402)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019402
Definition
Cronobacter phage vB_CsaP_GAP52, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
76631
Host Name
Cronobacter sakazakii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
115
%GC
44.22
Number of singletons
31
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006987690.1 NC_019402_p43 hypothetical protein phrog_26830 unknown function unknown function -1 34793 34987
YP_006987676.1 NC_019402_p29 hypothetical protein phrog_8821 Rz-like spanin lysis -1 28439 28882
YP_006987709.1 NC_019402_p62 hypothetical protein phrog_335 phosphatase other -1 44037 44525
YP_006987739.1 NC_019402_p92 hypothetical protein singleton unknown function unknown function -1 64636 65184
YP_006987668.1 NC_019402_p21 hypothetical protein phrog_3287 virion structural protein head and packaging 1 18057 19796
YP_006987658.1 NC_019402_p11 major head protein phrog_1328 major head protein head and packaging 1 9584 10684
YP_006987702.1 NC_019402_p55 hypothetical protein phrog_23896 unknown function unknown function -1 40683 40958
YP_006987732.1 NC_019402_p85 hypothetical protein phrog_7469 amidoligase enzyme other -1 59278 60819
YP_006987683.1 NC_019402_p36 hypothetical protein phrog_3986 unknown function unknown function -1 30939 31346
YP_006987654.1 NC_019402_p7 portal protein singleton unknown function unknown function 1 6411 7151
YP_006987742.1 NC_019402_p95 hypothetical protein phrog_5698 unknown function unknown function -1 65891 66550
YP_006987655.1 NC_019402_p8 hypothetical protein phrog_23234 unknown function unknown function 1 7152 7391
YP_006987671.1 NC_019402_p24 hypothetical protein phrog_27929 unknown function unknown function 1 21343 22185
YP_006987751.1 NC_019402_p104 anti-sigma factor Srd singleton unknown function unknown function -1 71647 72138
YP_006987724.1 NC_019402_p77 hypothetical protein phrog_8496 unknown function unknown function -1 54360 54545
YP_006987756.1 NC_019402_p109 phage/conjugal plasmid C-4 type zinc finger protein, TraR family phrog_54 DksA-like zinc-finger protein other -1 73658 73918
YP_006987721.1 NC_019402_p74 hypothetical protein phrog_23983 unknown function unknown function -1 52254 52847
YP_006987651.1 NC_019402_p4 hypothetical protein phrog_33425 unknown function unknown function 1 3209 3376
YP_006987653.1 NC_019402_p6 portal protein singleton unknown function unknown function 1 4871 6448
YP_006987741.1 NC_019402_p94 endolysin phrog_938 endolysin lysis -1 65406 65831
YP_006987650.1 NC_019402_p3 hypothetical protein singleton unknown function unknown function 1 2553 3155
YP_006987755.1 NC_019402_p108 hypothetical protein singleton unknown function unknown function -1 73437 73652
YP_006987712.1 NC_019402_p65 DNA-binding protein phrog_3636 DNA binding protein DNA, RNA and nucleotide metabolism -1 47211 47663
YP_006987678.1 NC_019402_p31 hypothetical protein singleton unknown function unknown function -1 29363 29491
YP_006987753.1 NC_019402_p106 hypothetical protein singleton unknown function unknown function -1 72579 73013
YP_006987713.1 NC_019402_p66 hypothetical protein phrog_10984 unknown function unknown function -1 47660 47929
YP_006987674.1 NC_019402_p27 hypothetical protein phrog_32895 unknown function unknown function 1 24422 28336
YP_006987685.1 NC_019402_p38 hypothetical protein singleton unknown function unknown function -1 31880 32092
YP_006987707.1 NC_019402_p60 hypothetical protein singleton unknown function unknown function -1 42665 42907
YP_006987735.1 NC_019402_p88 hypothetical protein phrog_19161 unknown function unknown function -1 62176 63120
YP_006987661.1 NC_019402_p14 hypothetical protein phrog_402 unknown function unknown function 1 11820 12002
YP_006987648.1 NC_019402_p1 hypothetical protein phrog_8771 unknown function unknown function 1 1712 2065
YP_006987758.1 NC_019402_p111 hypothetical protein singleton unknown function unknown function -1 74222 74371
YP_006987726.1 NC_019402_p79 hypothetical protein singleton unknown function unknown function -1 54777 55310
YP_006987680.1 NC_019402_p33 endonuclease VII phrog_2914 endonuclease VII DNA, RNA and nucleotide metabolism -1 30241 30549
YP_006987736.1 NC_019402_p89 hypothetical protein phrog_24882 unknown function unknown function -1 63132 64004
YP_006987686.1 NC_019402_p39 hypothetical protein singleton unknown function unknown function -1 32092 32421
YP_006987665.1 NC_019402_p18 hypothetical protein phrog_27560 unknown function unknown function 1 16394 16852
YP_006987708.1 NC_019402_p61 hypothetical protein phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism -1 42910 44037
YP_006987666.1 NC_019402_p19 hypothetical protein phrog_13258 virion structural protein head and packaging 1 16920 17171
YP_006987664.1 NC_019402_p17 hypothetical protein phrog_2871 tail protein tail 1 13491 16394
YP_006987694.1 NC_019402_p47 hypothetical protein phrog_23123 unknown function unknown function -1 36837 37292
YP_006987714.1 NC_019402_p67 thiol-disulfide isomerase and thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 47929 48192
YP_006987761.1 NC_019402_p114 hypothetical protein phrog_1448 unknown function unknown function -1 74989 75576
YP_006987762.1 NC_019402_p115 hypothetical protein singleton unknown function unknown function -1 75608 75949
YP_006987682.1 NC_019402_p35 hypothetical protein phrog_236 nucleotide kinase other -1 30679 30942
YP_006987718.1 NC_019402_p71 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 49374 51173
YP_006987673.1 NC_019402_p26 hypothetical protein singleton unknown function unknown function 1 22729 24375
YP_006987734.1 NC_019402_p87 hypothetical protein phrog_3815 COOH.NH2 ligase other -1 61367 62164
YP_006987725.1 NC_019402_p78 hypothetical protein phrog_3715 unknown function unknown function -1 54550 54777
YP_006987692.1 NC_019402_p45 hypothetical protein phrog_6599 unknown function unknown function -1 35632 36399
YP_006987695.1 NC_019402_p48 endolysin phrog_465 endolysin lysis -1 37320 37712
YP_006987698.1 NC_019402_p51 hypothetical protein phrog_3955 unknown function unknown function -1 38120 38269
YP_006987705.1 NC_019402_p58 hypothetical protein singleton unknown function unknown function -1 41827 41976
YP_006987675.1 NC_019402_p28 hypothetical protein phrog_1267 Rz-like spanin lysis -1 28363 28632
YP_006987706.1 NC_019402_p59 anaerobic nucleotide reductase subunit phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism -1 42155 42655
YP_006987697.1 NC_019402_p50 hypothetical protein phrog_11811 unknown function unknown function -1 37902 38120
YP_006987656.1 NC_019402_p9 scaffolding protein phrog_9013 head scaffolding protein head and packaging 1 7391 8407
YP_006987684.1 NC_019402_p37 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism -1 31336 31893
YP_006987672.1 NC_019402_p25 hypothetical protein phrog_25101 unknown function unknown function 1 22196 22729
YP_006987740.1 NC_019402_p93 hypothetical protein phrog_26686 unknown function unknown function -1 65184 65396
YP_006987752.1 NC_019402_p105 hypothetical protein phrog_22555 unknown function unknown function -1 72125 72436
YP_006987652.1 NC_019402_p5 terminase large subunit phrog_2 terminase large subunit head and packaging 1 3376 4860
YP_006987699.1 NC_019402_p52 hypothetical protein singleton unknown function unknown function -1 38271 38513
YP_006987715.1 NC_019402_p68 dCTP deaminase phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism -1 48185 48739
YP_006987719.1 NC_019402_p72 hypothetical protein phrog_27921 unknown function unknown function -1 51223 51732
YP_006987727.1 NC_019402_p80 hypothetical protein phrog_24116 unknown function unknown function -1 55319 55564
YP_006987696.1 NC_019402_p49 hypothetical protein phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 37693 37905
YP_006987679.1 NC_019402_p32 nicotinamide ribonucleoside or mononucleotide transporter phrog_1880 PnuC-like nicotinamide mononucleotide transport moron, auxiliary metabolic gene and host takeover -1 29540 30163
YP_006987700.1 NC_019402_p53 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 38525 40360
YP_006987691.1 NC_019402_p44 RNA polymerase ECF sigma factor phrog_1740 RNA polymerase sigma factor transcription regulation -1 35000 35557
YP_006987759.1 NC_019402_p112 hypothetical protein singleton unknown function unknown function -1 74365 74547
YP_006987704.1 NC_019402_p57 hypothetical protein phrog_2255 HNH endonuclease DNA, RNA and nucleotide metabolism -1 41469 41903
YP_006987747.1 NC_019402_p100 hypothetical protein singleton unknown function unknown function -1 68682 68876
YP_006987688.1 NC_019402_p41 hypothetical protein singleton unknown function unknown function -1 33557 33925
YP_006987667.1 NC_019402_p20 structural protein phrog_6465 tail protein tail 1 17168 18046
YP_006987660.1 NC_019402_p13 hypothetical protein phrog_20917 unknown function unknown function 1 11202 11810
YP_006987738.1 NC_019402_p91 hypothetical protein phrog_951 unknown function unknown function -1 64252 64623
YP_006987716.1 NC_019402_p69 hypothetical protein singleton unknown function unknown function -1 48739 48852
YP_006987748.1 NC_019402_p101 nicotinamide phosphoribosyl transferase phrog_448 nicotinamide phosphoribosyl transferase other -1 68876 70540
YP_006987720.1 NC_019402_p73 hypothetical protein phrog_2520 gamma-glutamyl cyclotransferase moron, auxiliary metabolic gene and host takeover -1 51754 52188
YP_006987744.1 NC_019402_p97 hypothetical protein phrog_5698 unknown function unknown function -1 66926 67501
YP_006987754.1 NC_019402_p107 hypothetical protein singleton unknown function unknown function -1 73033 73440
YP_006987760.1 NC_019402_p113 hypothetical protein singleton unknown function unknown function -1 74544 74921
YP_006987689.1 NC_019402_p42 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 33897 34793
YP_006987659.1 NC_019402_p12 hypothetical protein singleton unknown function unknown function 1 10687 11127
YP_006987728.1 NC_019402_p81 ATP-grasp enzyme phrog_2599 ribosomal protein S6 glutaminyl transferase moron, auxiliary metabolic gene and host takeover -1 55549 56733
YP_006987722.1 NC_019402_p75 RNA ligase 2 phrog_548 RNA ligase DNA, RNA and nucleotide metabolism -1 52877 53842
YP_006987730.1 NC_019402_p83 hypothetical protein phrog_9477 unknown function unknown function -1 57012 57245
YP_006987693.1 NC_019402_p46 HNH endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism -1 36396 36761
YP_006987687.1 NC_019402_p40 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 32414 33502
YP_006987711.1 NC_019402_p64 anaerobic ribonucleotide reductase subunit or ribonucleoside triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 45027 47159
YP_006987746.1 NC_019402_p99 hypothetical protein phrog_7180 membrane protein moron, auxiliary metabolic gene and host takeover -1 67761 68681
YP_006987749.1 NC_019402_p102 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other -1 70537 71394
YP_006987681.1 NC_019402_p34 hypothetical protein singleton unknown function unknown function -1 30585 30716
YP_006987733.1 NC_019402_p86 hypothetical protein phrog_4877 unknown function unknown function -1 60789 61367
YP_006987737.1 NC_019402_p90 hypothetical protein singleton unknown function unknown function -1 64017 64205
YP_006987750.1 NC_019402_p103 hypothetical protein singleton unknown function unknown function -1 71399 71653
YP_006987649.1 NC_019402_p2 hypothetical protein phrog_2423 unknown function unknown function 1 2360 2524
YP_006987703.1 NC_019402_p56 hypothetical protein phrog_4590 unknown function unknown function -1 41129 41467
YP_006987717.1 NC_019402_p70 DNA polymerase phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 48883 49377
YP_006987757.1 NC_019402_p110 hypothetical protein singleton unknown function unknown function -1 74100 74222
YP_006987731.1 NC_019402_p84 glutamine transaminase phrog_4736 L-glutamine-D-fructose-6-phosphate aminotransferase other -1 57250 59223
YP_006987663.1 NC_019402_p16 hypothetical protein phrog_24774 unknown function unknown function 1 12719 13498
YP_006987729.1 NC_019402_p82 hypothetical protein singleton unknown function unknown function -1 56801 57019
YP_006987710.1 NC_019402_p63 homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 44564 45052
YP_006987657.1 NC_019402_p10 major head protein phrog_1328 major head protein head and packaging 1 8547 9503
YP_006987701.1 NC_019402_p54 hypothetical protein phrog_1247 MazG-like pyrophosphatase other -1 40375 40683
YP_006987670.1 NC_019402_p23 DNA injection protein phrog_4287 DNA ejection protein DNA, RNA and nucleotide metabolism 1 20077 21309
YP_006987669.1 NC_019402_p22 hypothetical protein singleton unknown function unknown function 1 19796 20065
YP_006987743.1 NC_019402_p96 hypothetical protein phrog_22099 unknown function unknown function -1 66660 66896
YP_006987662.1 NC_019402_p15 hypothetical protein phrog_2941 virion structural protein head and packaging 1 12015 12704
YP_006987677.1 NC_019402_p30 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism -1 28879 29316
YP_006987723.1 NC_019402_p76 hypothetical protein phrog_24263 unknown function unknown function -1 53848 54360
YP_006987745.1 NC_019402_p98 hypothetical protein singleton unknown function unknown function -1 67501 67707