| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019402 |
Definition |
Cronobacter phage vB_CsaP_GAP52, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
76631 |
Host Name |
Cronobacter sakazakii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
115 |
%GC |
44.22 |
Number of singletons |
31 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006987690.1 | NC_019402_p43 | hypothetical protein | phrog_26830 | unknown function | unknown function | -1 | 34793 | 34987 |
| YP_006987676.1 | NC_019402_p29 | hypothetical protein | phrog_8821 | Rz-like spanin | lysis | -1 | 28439 | 28882 |
| YP_006987709.1 | NC_019402_p62 | hypothetical protein | phrog_335 | phosphatase | other | -1 | 44037 | 44525 |
| YP_006987739.1 | NC_019402_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 64636 | 65184 |
| YP_006987668.1 | NC_019402_p21 | hypothetical protein | phrog_3287 | virion structural protein | head and packaging | 1 | 18057 | 19796 |
| YP_006987658.1 | NC_019402_p11 | major head protein | phrog_1328 | major head protein | head and packaging | 1 | 9584 | 10684 |
| YP_006987702.1 | NC_019402_p55 | hypothetical protein | phrog_23896 | unknown function | unknown function | -1 | 40683 | 40958 |
| YP_006987732.1 | NC_019402_p85 | hypothetical protein | phrog_7469 | amidoligase enzyme | other | -1 | 59278 | 60819 |
| YP_006987683.1 | NC_019402_p36 | hypothetical protein | phrog_3986 | unknown function | unknown function | -1 | 30939 | 31346 |
| YP_006987654.1 | NC_019402_p7 | portal protein | singleton | unknown function | unknown function | 1 | 6411 | 7151 |
| YP_006987742.1 | NC_019402_p95 | hypothetical protein | phrog_5698 | unknown function | unknown function | -1 | 65891 | 66550 |
| YP_006987655.1 | NC_019402_p8 | hypothetical protein | phrog_23234 | unknown function | unknown function | 1 | 7152 | 7391 |
| YP_006987671.1 | NC_019402_p24 | hypothetical protein | phrog_27929 | unknown function | unknown function | 1 | 21343 | 22185 |
| YP_006987751.1 | NC_019402_p104 | anti-sigma factor Srd | singleton | unknown function | unknown function | -1 | 71647 | 72138 |
| YP_006987724.1 | NC_019402_p77 | hypothetical protein | phrog_8496 | unknown function | unknown function | -1 | 54360 | 54545 |
| YP_006987756.1 | NC_019402_p109 | phage/conjugal plasmid C-4 type zinc finger protein, TraR family | phrog_54 | DksA-like zinc-finger protein | other | -1 | 73658 | 73918 |
| YP_006987721.1 | NC_019402_p74 | hypothetical protein | phrog_23983 | unknown function | unknown function | -1 | 52254 | 52847 |
| YP_006987651.1 | NC_019402_p4 | hypothetical protein | phrog_33425 | unknown function | unknown function | 1 | 3209 | 3376 |
| YP_006987653.1 | NC_019402_p6 | portal protein | singleton | unknown function | unknown function | 1 | 4871 | 6448 |
| YP_006987741.1 | NC_019402_p94 | endolysin | phrog_938 | endolysin | lysis | -1 | 65406 | 65831 |
| YP_006987650.1 | NC_019402_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2553 | 3155 |
| YP_006987755.1 | NC_019402_p108 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73437 | 73652 |
| YP_006987712.1 | NC_019402_p65 | DNA-binding protein | phrog_3636 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 47211 | 47663 |
| YP_006987678.1 | NC_019402_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29363 | 29491 |
| YP_006987753.1 | NC_019402_p106 | hypothetical protein | singleton | unknown function | unknown function | -1 | 72579 | 73013 |
| YP_006987713.1 | NC_019402_p66 | hypothetical protein | phrog_10984 | unknown function | unknown function | -1 | 47660 | 47929 |
| YP_006987674.1 | NC_019402_p27 | hypothetical protein | phrog_32895 | unknown function | unknown function | 1 | 24422 | 28336 |
| YP_006987685.1 | NC_019402_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31880 | 32092 |
| YP_006987707.1 | NC_019402_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42665 | 42907 |
| YP_006987735.1 | NC_019402_p88 | hypothetical protein | phrog_19161 | unknown function | unknown function | -1 | 62176 | 63120 |
| YP_006987661.1 | NC_019402_p14 | hypothetical protein | phrog_402 | unknown function | unknown function | 1 | 11820 | 12002 |
| YP_006987648.1 | NC_019402_p1 | hypothetical protein | phrog_8771 | unknown function | unknown function | 1 | 1712 | 2065 |
| YP_006987758.1 | NC_019402_p111 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74222 | 74371 |
| YP_006987726.1 | NC_019402_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 54777 | 55310 |
| YP_006987680.1 | NC_019402_p33 | endonuclease VII | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 30241 | 30549 |
| YP_006987736.1 | NC_019402_p89 | hypothetical protein | phrog_24882 | unknown function | unknown function | -1 | 63132 | 64004 |
| YP_006987686.1 | NC_019402_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32092 | 32421 |
| YP_006987665.1 | NC_019402_p18 | hypothetical protein | phrog_27560 | unknown function | unknown function | 1 | 16394 | 16852 |
| YP_006987708.1 | NC_019402_p61 | hypothetical protein | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | -1 | 42910 | 44037 |
| YP_006987666.1 | NC_019402_p19 | hypothetical protein | phrog_13258 | virion structural protein | head and packaging | 1 | 16920 | 17171 |
| YP_006987664.1 | NC_019402_p17 | hypothetical protein | phrog_2871 | tail protein | tail | 1 | 13491 | 16394 |
| YP_006987694.1 | NC_019402_p47 | hypothetical protein | phrog_23123 | unknown function | unknown function | -1 | 36837 | 37292 |
| YP_006987714.1 | NC_019402_p67 | thiol-disulfide isomerase and thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 47929 | 48192 |
| YP_006987761.1 | NC_019402_p114 | hypothetical protein | phrog_1448 | unknown function | unknown function | -1 | 74989 | 75576 |
| YP_006987762.1 | NC_019402_p115 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75608 | 75949 |
| YP_006987682.1 | NC_019402_p35 | hypothetical protein | phrog_236 | nucleotide kinase | other | -1 | 30679 | 30942 |
| YP_006987718.1 | NC_019402_p71 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | -1 | 49374 | 51173 |
| YP_006987673.1 | NC_019402_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22729 | 24375 |
| YP_006987734.1 | NC_019402_p87 | hypothetical protein | phrog_3815 | COOH.NH2 ligase | other | -1 | 61367 | 62164 |
| YP_006987725.1 | NC_019402_p78 | hypothetical protein | phrog_3715 | unknown function | unknown function | -1 | 54550 | 54777 |
| YP_006987692.1 | NC_019402_p45 | hypothetical protein | phrog_6599 | unknown function | unknown function | -1 | 35632 | 36399 |
| YP_006987695.1 | NC_019402_p48 | endolysin | phrog_465 | endolysin | lysis | -1 | 37320 | 37712 |
| YP_006987698.1 | NC_019402_p51 | hypothetical protein | phrog_3955 | unknown function | unknown function | -1 | 38120 | 38269 |
| YP_006987705.1 | NC_019402_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41827 | 41976 |
| YP_006987675.1 | NC_019402_p28 | hypothetical protein | phrog_1267 | Rz-like spanin | lysis | -1 | 28363 | 28632 |
| YP_006987706.1 | NC_019402_p59 | anaerobic nucleotide reductase subunit | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 42155 | 42655 |
| YP_006987697.1 | NC_019402_p50 | hypothetical protein | phrog_11811 | unknown function | unknown function | -1 | 37902 | 38120 |
| YP_006987656.1 | NC_019402_p9 | scaffolding protein | phrog_9013 | head scaffolding protein | head and packaging | 1 | 7391 | 8407 |
| YP_006987684.1 | NC_019402_p37 | hypothetical protein | phrog_1817 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 31336 | 31893 |
| YP_006987672.1 | NC_019402_p25 | hypothetical protein | phrog_25101 | unknown function | unknown function | 1 | 22196 | 22729 |
| YP_006987740.1 | NC_019402_p93 | hypothetical protein | phrog_26686 | unknown function | unknown function | -1 | 65184 | 65396 |
| YP_006987752.1 | NC_019402_p105 | hypothetical protein | phrog_22555 | unknown function | unknown function | -1 | 72125 | 72436 |
| YP_006987652.1 | NC_019402_p5 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 3376 | 4860 |
| YP_006987699.1 | NC_019402_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38271 | 38513 |
| YP_006987715.1 | NC_019402_p68 | dCTP deaminase | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | -1 | 48185 | 48739 |
| YP_006987719.1 | NC_019402_p72 | hypothetical protein | phrog_27921 | unknown function | unknown function | -1 | 51223 | 51732 |
| YP_006987727.1 | NC_019402_p80 | hypothetical protein | phrog_24116 | unknown function | unknown function | -1 | 55319 | 55564 |
| YP_006987696.1 | NC_019402_p49 | hypothetical protein | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 37693 | 37905 |
| YP_006987679.1 | NC_019402_p32 | nicotinamide ribonucleoside or mononucleotide transporter | phrog_1880 | PnuC-like nicotinamide mononucleotide transport | moron, auxiliary metabolic gene and host takeover | -1 | 29540 | 30163 |
| YP_006987700.1 | NC_019402_p53 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 38525 | 40360 |
| YP_006987691.1 | NC_019402_p44 | RNA polymerase ECF sigma factor | phrog_1740 | RNA polymerase sigma factor | transcription regulation | -1 | 35000 | 35557 |
| YP_006987759.1 | NC_019402_p112 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74365 | 74547 |
| YP_006987704.1 | NC_019402_p57 | hypothetical protein | phrog_2255 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 41469 | 41903 |
| YP_006987747.1 | NC_019402_p100 | hypothetical protein | singleton | unknown function | unknown function | -1 | 68682 | 68876 |
| YP_006987688.1 | NC_019402_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33557 | 33925 |
| YP_006987667.1 | NC_019402_p20 | structural protein | phrog_6465 | tail protein | tail | 1 | 17168 | 18046 |
| YP_006987660.1 | NC_019402_p13 | hypothetical protein | phrog_20917 | unknown function | unknown function | 1 | 11202 | 11810 |
| YP_006987738.1 | NC_019402_p91 | hypothetical protein | phrog_951 | unknown function | unknown function | -1 | 64252 | 64623 |
| YP_006987716.1 | NC_019402_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48739 | 48852 |
| YP_006987748.1 | NC_019402_p101 | nicotinamide phosphoribosyl transferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | -1 | 68876 | 70540 |
| YP_006987720.1 | NC_019402_p73 | hypothetical protein | phrog_2520 | gamma-glutamyl cyclotransferase | moron, auxiliary metabolic gene and host takeover | -1 | 51754 | 52188 |
| YP_006987744.1 | NC_019402_p97 | hypothetical protein | phrog_5698 | unknown function | unknown function | -1 | 66926 | 67501 |
| YP_006987754.1 | NC_019402_p107 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73033 | 73440 |
| YP_006987760.1 | NC_019402_p113 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74544 | 74921 |
| YP_006987689.1 | NC_019402_p42 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 33897 | 34793 |
| YP_006987659.1 | NC_019402_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10687 | 11127 |
| YP_006987728.1 | NC_019402_p81 | ATP-grasp enzyme | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | -1 | 55549 | 56733 |
| YP_006987722.1 | NC_019402_p75 | RNA ligase 2 | phrog_548 | RNA ligase | DNA, RNA and nucleotide metabolism | -1 | 52877 | 53842 |
| YP_006987730.1 | NC_019402_p83 | hypothetical protein | phrog_9477 | unknown function | unknown function | -1 | 57012 | 57245 |
| YP_006987693.1 | NC_019402_p46 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 36396 | 36761 |
| YP_006987687.1 | NC_019402_p40 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 32414 | 33502 |
| YP_006987711.1 | NC_019402_p64 | anaerobic ribonucleotide reductase subunit or ribonucleoside triphosphate reductase | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | -1 | 45027 | 47159 |
| YP_006987746.1 | NC_019402_p99 | hypothetical protein | phrog_7180 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 67761 | 68681 |
| YP_006987749.1 | NC_019402_p102 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | -1 | 70537 | 71394 |
| YP_006987681.1 | NC_019402_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30585 | 30716 |
| YP_006987733.1 | NC_019402_p86 | hypothetical protein | phrog_4877 | unknown function | unknown function | -1 | 60789 | 61367 |
| YP_006987737.1 | NC_019402_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 64017 | 64205 |
| YP_006987750.1 | NC_019402_p103 | hypothetical protein | singleton | unknown function | unknown function | -1 | 71399 | 71653 |
| YP_006987649.1 | NC_019402_p2 | hypothetical protein | phrog_2423 | unknown function | unknown function | 1 | 2360 | 2524 |
| YP_006987703.1 | NC_019402_p56 | hypothetical protein | phrog_4590 | unknown function | unknown function | -1 | 41129 | 41467 |
| YP_006987717.1 | NC_019402_p70 | DNA polymerase | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | -1 | 48883 | 49377 |
| YP_006987757.1 | NC_019402_p110 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74100 | 74222 |
| YP_006987731.1 | NC_019402_p84 | glutamine transaminase | phrog_4736 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | -1 | 57250 | 59223 |
| YP_006987663.1 | NC_019402_p16 | hypothetical protein | phrog_24774 | unknown function | unknown function | 1 | 12719 | 13498 |
| YP_006987729.1 | NC_019402_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56801 | 57019 |
| YP_006987710.1 | NC_019402_p63 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 44564 | 45052 |
| YP_006987657.1 | NC_019402_p10 | major head protein | phrog_1328 | major head protein | head and packaging | 1 | 8547 | 9503 |
| YP_006987701.1 | NC_019402_p54 | hypothetical protein | phrog_1247 | MazG-like pyrophosphatase | other | -1 | 40375 | 40683 |
| YP_006987670.1 | NC_019402_p23 | DNA injection protein | phrog_4287 | DNA ejection protein | DNA, RNA and nucleotide metabolism | 1 | 20077 | 21309 |
| YP_006987669.1 | NC_019402_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19796 | 20065 |
| YP_006987743.1 | NC_019402_p96 | hypothetical protein | phrog_22099 | unknown function | unknown function | -1 | 66660 | 66896 |
| YP_006987662.1 | NC_019402_p15 | hypothetical protein | phrog_2941 | virion structural protein | head and packaging | 1 | 12015 | 12704 |
| YP_006987677.1 | NC_019402_p30 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28879 | 29316 |
| YP_006987723.1 | NC_019402_p76 | hypothetical protein | phrog_24263 | unknown function | unknown function | -1 | 53848 | 54360 |
| YP_006987745.1 | NC_019402_p98 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67501 | 67707 |