| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019414 |
Definition |
Streptomyces phage R4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Arequatrovirus. |
DB of origin |
REFSEQ |
Length |
51071 |
Host Name |
Streptomyces coelicolor |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
66.96 |
Number of singletons |
7 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006990174.1 | NC_019414_p59 | hypothetical protein | phrog_1997 | unknown function | unknown function | -1 | 41571 | 41765 |
| YP_006990154.1 | NC_019414_p39 | primase (toprim) | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 29375 | 30037 |
| YP_006990144.1 | NC_019414_p29 | hypothetical protein | phrog_20055 | unknown function | unknown function | 1 | 24358 | 24879 |
| YP_006990119.1 | NC_019414_p4 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1751 | 2191 |
| YP_006990182.1 | NC_019414_p67 | hypothetical protein | phrog_13837 | unknown function | unknown function | -1 | 43796 | 44128 |
| YP_006990201.1 | NC_019414_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50148 | 50429 |
| YP_006990151.1 | NC_019414_p36 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28418 | 28795 |
| YP_006990118.1 | NC_019414_p3 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1411 | 1641 |
| YP_006990130.1 | NC_019414_p15 | tail chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 10901 | 11242 |
| YP_006990183.1 | NC_019414_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44125 | 44217 |
| YP_006990178.1 | NC_019414_p63 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 42460 | 43047 |
| YP_006990147.1 | NC_019414_p32 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 25978 | 26460 |
| YP_006990124.1 | NC_019414_p9 | major capsid | phrog_283 | major head protein | head and packaging | 1 | 7079 | 8146 |
| YP_006990161.1 | NC_019414_p46 | hypothetical protein | phrog_3512 | sigma factor | transcription regulation | 1 | 32558 | 32944 |
| YP_006990123.1 | NC_019414_p8 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6477 | 7001 |
| YP_006990158.1 | NC_019414_p43 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 30804 | 31034 |
| YP_006990173.1 | NC_019414_p58 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 41077 | 41574 |
| YP_006990177.1 | NC_019414_p62 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 42258 | 42458 |
| YP_006990180.1 | NC_019414_p65 | hypothetical protein | phrog_5209 | unknown function | unknown function | -1 | 43240 | 43554 |
| YP_006990171.1 | NC_019414_p56 | hypothetical protein | phrog_11485 | unknown function | unknown function | -1 | 40377 | 40856 |
| YP_006990127.1 | NC_019414_p12 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 9060 | 9527 |
| YP_006990162.1 | NC_019414_p47 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 32941 | 33318 |
| YP_006990199.1 | NC_019414_p84 | hypothetical protein | phrog_11579 | unknown function | unknown function | -1 | 49490 | 49882 |
| YP_006990159.1 | NC_019414_p44 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 31018 | 32223 |
| YP_006990191.1 | NC_019414_p76 | hypothetical protein | phrog_16954 | unknown function | unknown function | -1 | 46519 | 47076 |
| YP_006990200.1 | NC_019414_p85 | hypothetical protein | phrog_23917 | unknown function | unknown function | -1 | 49879 | 50097 |
| YP_006990185.1 | NC_019414_p70 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 44394 | 44813 |
| YP_006990135.1 | NC_019414_p20 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 17120 | 17422 |
| YP_006990169.1 | NC_019414_p54 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 39259 | 39966 |
| YP_006990165.1 | NC_019414_p50 | hypothetical protein | phrog_15135 | unknown function | unknown function | -1 | 35956 | 36204 |
| YP_006990197.1 | NC_019414_p82 | hypothetical protein | phrog_31224 | unknown function | unknown function | -1 | 48970 | 49206 |
| YP_006990136.1 | NC_019414_p21 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 17423 | 19612 |
| YP_006990175.1 | NC_019414_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41762 | 41845 |
| YP_006990138.1 | NC_019414_p23 | hypothetical protein | phrog_988 | tail protein | tail | 1 | 20150 | 21427 |
| YP_006990196.1 | NC_019414_p81 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 48479 | 48913 |
| YP_006990198.1 | NC_019414_p83 | hypothetical protein | phrog_4485 | unknown function | unknown function | -1 | 49203 | 49493 |
| YP_006990137.1 | NC_019414_p22 | hypothetical protein | phrog_4817 | unknown function | unknown function | 1 | 19624 | 20118 |
| YP_006990184.1 | NC_019414_p69 | hypothetical protein | phrog_9778 | unknown function | unknown function | -1 | 44221 | 44394 |
| YP_006990143.1 | NC_019414_p28 | repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 23644 | 24102 |
| YP_006990131.1 | NC_019414_p16 | tail chaperone | phrog_5813 | tail assembly chaperone | tail | 1 | 11302 | 11634 |
| YP_006990192.1 | NC_019414_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47073 | 47174 |
| YP_006990126.1 | NC_019414_p11 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 8719 | 9060 |
| YP_006990133.1 | NC_019414_p18 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 15046 | 15903 |
| YP_006990172.1 | NC_019414_p57 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 40853 | 41080 |
| YP_006990167.1 | NC_019414_p52 | recombinase, serine integrase type | phrog_95 | integrase | integration and excision | 1 | 37594 | 39006 |
| YP_006990156.1 | NC_019414_p41 | hypothetical protein | phrog_10412 | unknown function | unknown function | 1 | 30401 | 30613 |
| YP_006990188.1 | NC_019414_p73 | hypothetical protein | phrog_4239 | unknown function | unknown function | -1 | 45302 | 45832 |
| YP_006990141.1 | NC_019414_p26 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 22952 | 23164 |
| YP_006990193.1 | NC_019414_p78 | hypothetical protein | phrog_4313 | unknown function | unknown function | -1 | 47177 | 48073 |
| YP_006990157.1 | NC_019414_p42 | hypothetical protein | phrog_24938 | unknown function | unknown function | 1 | 30614 | 30802 |
| YP_006990152.1 | NC_019414_p37 | hypothetical protein | phrog_4673 | unknown function | unknown function | 1 | 28792 | 28929 |
| YP_006990139.1 | NC_019414_p24 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 21424 | 21807 |
| YP_006990145.1 | NC_019414_p30 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24880 | 25854 |
| YP_006990125.1 | NC_019414_p10 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8225 | 8722 |
| YP_006990116.1 | NC_019414_p1 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 671 | 985 |
| YP_006990120.1 | NC_019414_p5 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 2205 | 3866 |
| YP_006990160.1 | NC_019414_p45 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 32220 | 32561 |
| YP_006990121.1 | NC_019414_p6 | portal | phrog_104 | portal protein | head and packaging | 1 | 3896 | 5368 |
| YP_006990155.1 | NC_019414_p40 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 30042 | 30404 |
| YP_006990142.1 | NC_019414_p27 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 23221 | 23529 |
| YP_006990150.1 | NC_019414_p35 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 27477 | 28352 |
| YP_006990195.1 | NC_019414_p80 | hypothetical protein | phrog_12223 | unknown function | unknown function | -1 | 48279 | 48416 |
| YP_006990132.1 | NC_019414_p17 | tail tape measure | phrog_305 | tail length tape measure protein | tail | 1 | 11638 | 15039 |
| YP_006990163.1 | NC_019414_p48 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 33396 | 35510 |
| YP_006990117.1 | NC_019414_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1349 | 1414 |
| YP_006990134.1 | NC_019414_p19 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 15904 | 17115 |
| YP_006990153.1 | NC_019414_p38 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28926 | 29360 |
| YP_006990190.1 | NC_019414_p75 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 46294 | 46437 |
| YP_006990166.1 | NC_019414_p51 | DNA binding protein, XRE family | phrog_5823 | transcriptional regulator | transcription regulation | -1 | 36282 | 37457 |
| YP_006990194.1 | NC_019414_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48084 | 48230 |
| YP_006990179.1 | NC_019414_p64 | hypothetical protein | phrog_25829 | unknown function | unknown function | -1 | 43044 | 43247 |
| YP_006990168.1 | NC_019414_p53 | hypothetical protein | phrog_9533 | unknown function | unknown function | -1 | 39062 | 39262 |
| YP_006990181.1 | NC_019414_p66 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 43554 | 43796 |
| YP_006990148.1 | NC_019414_p33 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 26543 | 26980 |
| YP_006990186.1 | NC_019414_p71 | hypothetical protein | phrog_14620 | unknown function | unknown function | -1 | 44656 | 45075 |
| YP_006990129.1 | NC_019414_p14 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 10037 | 10777 |
| YP_006990189.1 | NC_019414_p74 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 45852 | 46265 |
| YP_006990122.1 | NC_019414_p7 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5365 | 6474 |
| YP_006990140.1 | NC_019414_p25 | endolysin | phrog_1493 | endolysin | lysis | 1 | 21877 | 22947 |
| YP_006990164.1 | NC_019414_p49 | hypothetical protein | phrog_10944 | unknown function | unknown function | -1 | 35717 | 35959 |
| YP_006990128.1 | NC_019414_p13 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9527 | 10024 |
| YP_006990170.1 | NC_019414_p55 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 40113 | 40376 |
| YP_006990176.1 | NC_019414_p61 | hypothetical protein | phrog_20471 | unknown function | unknown function | -1 | 41857 | 42261 |
| YP_006990149.1 | NC_019414_p34 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 27055 | 27540 |
| YP_006990187.1 | NC_019414_p72 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 45072 | 45299 |
| YP_006990146.1 | NC_019414_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25859 | 25981 |