Genomic map of Streptomyces phage R4 (NC_019414)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019414
Definition
Streptomyces phage R4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Arequatrovirus.
DB of origin
REFSEQ
Length
51071
Host Name
Streptomyces coelicolor
Host domain
Bacteria
Is prophage?
undef
Number of proteins
86
%GC
66.96
Number of singletons
7
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006990174.1 NC_019414_p59 hypothetical protein phrog_1997 unknown function unknown function -1 41571 41765
YP_006990154.1 NC_019414_p39 primase (toprim) phrog_849 DNA primase DNA, RNA and nucleotide metabolism 1 29375 30037
YP_006990144.1 NC_019414_p29 hypothetical protein phrog_20055 unknown function unknown function 1 24358 24879
YP_006990119.1 NC_019414_p4 hypothetical protein phrog_226 minor tail protein tail 1 1751 2191
YP_006990182.1 NC_019414_p67 hypothetical protein phrog_13837 unknown function unknown function -1 43796 44128
YP_006990201.1 NC_019414_p86 hypothetical protein singleton unknown function unknown function -1 50148 50429
YP_006990151.1 NC_019414_p36 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28418 28795
YP_006990118.1 NC_019414_p3 hypothetical protein phrog_3555 unknown function unknown function 1 1411 1641
YP_006990130.1 NC_019414_p15 tail chaperone phrog_330 tail assembly chaperone tail 1 10901 11242
YP_006990183.1 NC_019414_p68 hypothetical protein singleton unknown function unknown function -1 44125 44217
YP_006990178.1 NC_019414_p63 dNMP kinase phrog_139 deoxynucleoside monophosphate kinase other -1 42460 43047
YP_006990147.1 NC_019414_p32 hypothetical protein phrog_3912 unknown function unknown function 1 25978 26460
YP_006990124.1 NC_019414_p9 major capsid phrog_283 major head protein head and packaging 1 7079 8146
YP_006990161.1 NC_019414_p46 hypothetical protein phrog_3512 sigma factor transcription regulation 1 32558 32944
YP_006990123.1 NC_019414_p8 scaffold protein phrog_233 head scaffolding protein head and packaging 1 6477 7001
YP_006990158.1 NC_019414_p43 hypothetical protein phrog_3979 unknown function unknown function 1 30804 31034
YP_006990173.1 NC_019414_p58 hypothetical protein phrog_3965 unknown function unknown function -1 41077 41574
YP_006990177.1 NC_019414_p62 hypothetical protein phrog_4024 unknown function unknown function -1 42258 42458
YP_006990180.1 NC_019414_p65 hypothetical protein phrog_5209 unknown function unknown function -1 43240 43554
YP_006990171.1 NC_019414_p56 hypothetical protein phrog_11485 unknown function unknown function -1 40377 40856
YP_006990127.1 NC_019414_p12 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 9060 9527
YP_006990162.1 NC_019414_p47 hypothetical protein phrog_4123 unknown function unknown function 1 32941 33318
YP_006990199.1 NC_019414_p84 hypothetical protein phrog_11579 unknown function unknown function -1 49490 49882
YP_006990159.1 NC_019414_p44 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 31018 32223
YP_006990191.1 NC_019414_p76 hypothetical protein phrog_16954 unknown function unknown function -1 46519 47076
YP_006990200.1 NC_019414_p85 hypothetical protein phrog_23917 unknown function unknown function -1 49879 50097
YP_006990185.1 NC_019414_p70 hypothetical protein phrog_3994 unknown function unknown function -1 44394 44813
YP_006990135.1 NC_019414_p20 hypothetical protein phrog_1276 unknown function unknown function 1 17120 17422
YP_006990169.1 NC_019414_p54 ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 39259 39966
YP_006990165.1 NC_019414_p50 hypothetical protein phrog_15135 unknown function unknown function -1 35956 36204
YP_006990197.1 NC_019414_p82 hypothetical protein phrog_31224 unknown function unknown function -1 48970 49206
YP_006990136.1 NC_019414_p21 hypothetical protein phrog_4013 unknown function unknown function 1 17423 19612
YP_006990175.1 NC_019414_p60 hypothetical protein singleton unknown function unknown function -1 41762 41845
YP_006990138.1 NC_019414_p23 hypothetical protein phrog_988 tail protein tail 1 20150 21427
YP_006990196.1 NC_019414_p81 hypothetical protein phrog_2563 unknown function unknown function -1 48479 48913
YP_006990198.1 NC_019414_p83 hypothetical protein phrog_4485 unknown function unknown function -1 49203 49493
YP_006990137.1 NC_019414_p22 hypothetical protein phrog_4817 unknown function unknown function 1 19624 20118
YP_006990184.1 NC_019414_p69 hypothetical protein phrog_9778 unknown function unknown function -1 44221 44394
YP_006990143.1 NC_019414_p28 repressor phrog_3929 transcriptional repressor transcription regulation 1 23644 24102
YP_006990131.1 NC_019414_p16 tail chaperone phrog_5813 tail assembly chaperone tail 1 11302 11634
YP_006990192.1 NC_019414_p77 hypothetical protein singleton unknown function unknown function -1 47073 47174
YP_006990126.1 NC_019414_p11 hypothetical protein phrog_320 head closure Hc1 connector 1 8719 9060
YP_006990133.1 NC_019414_p18 hypothetical protein phrog_33 distal tail protein Dit tail 1 15046 15903
YP_006990172.1 NC_019414_p57 hypothetical protein phrog_3424 unknown function unknown function -1 40853 41080
YP_006990167.1 NC_019414_p52 recombinase, serine integrase type phrog_95 integrase integration and excision 1 37594 39006
YP_006990156.1 NC_019414_p41 hypothetical protein phrog_10412 unknown function unknown function 1 30401 30613
YP_006990188.1 NC_019414_p73 hypothetical protein phrog_4239 unknown function unknown function -1 45302 45832
YP_006990141.1 NC_019414_p26 hypothetical protein phrog_4092 unknown function unknown function 1 22952 23164
YP_006990193.1 NC_019414_p78 hypothetical protein phrog_4313 unknown function unknown function -1 47177 48073
YP_006990157.1 NC_019414_p42 hypothetical protein phrog_24938 unknown function unknown function 1 30614 30802
YP_006990152.1 NC_019414_p37 hypothetical protein phrog_4673 unknown function unknown function 1 28792 28929
YP_006990139.1 NC_019414_p24 hypothetical protein phrog_3534 unknown function unknown function 1 21424 21807
YP_006990145.1 NC_019414_p30 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 24880 25854
YP_006990125.1 NC_019414_p10 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 8225 8722
YP_006990116.1 NC_019414_p1 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 671 985
YP_006990120.1 NC_019414_p5 terminase phrog_9 terminase large subunit head and packaging 1 2205 3866
YP_006990160.1 NC_019414_p45 hypothetical protein phrog_1340 unknown function unknown function 1 32220 32561
YP_006990121.1 NC_019414_p6 portal phrog_104 portal protein head and packaging 1 3896 5368
YP_006990155.1 NC_019414_p40 hypothetical protein phrog_4022 unknown function unknown function 1 30042 30404
YP_006990142.1 NC_019414_p27 hypothetical protein phrog_4061 unknown function unknown function -1 23221 23529
YP_006990150.1 NC_019414_p35 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 27477 28352
YP_006990195.1 NC_019414_p80 hypothetical protein phrog_12223 unknown function unknown function -1 48279 48416
YP_006990132.1 NC_019414_p17 tail tape measure phrog_305 tail length tape measure protein tail 1 11638 15039
YP_006990163.1 NC_019414_p48 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 33396 35510
YP_006990117.1 NC_019414_p2 hypothetical protein singleton unknown function unknown function 1 1349 1414
YP_006990134.1 NC_019414_p19 hypothetical protein phrog_538 minor tail protein tail 1 15904 17115
YP_006990153.1 NC_019414_p38 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism 1 28926 29360
YP_006990190.1 NC_019414_p75 hypothetical protein phrog_4275 unknown function unknown function -1 46294 46437
YP_006990166.1 NC_019414_p51 DNA binding protein, XRE family phrog_5823 transcriptional regulator transcription regulation -1 36282 37457
YP_006990194.1 NC_019414_p79 hypothetical protein singleton unknown function unknown function -1 48084 48230
YP_006990179.1 NC_019414_p64 hypothetical protein phrog_25829 unknown function unknown function -1 43044 43247
YP_006990168.1 NC_019414_p53 hypothetical protein phrog_9533 unknown function unknown function -1 39062 39262
YP_006990181.1 NC_019414_p66 hypothetical protein phrog_3991 unknown function unknown function -1 43554 43796
YP_006990148.1 NC_019414_p33 hypothetical protein phrog_1288 unknown function unknown function 1 26543 26980
YP_006990186.1 NC_019414_p71 hypothetical protein phrog_14620 unknown function unknown function -1 44656 45075
YP_006990129.1 NC_019414_p14 hypothetical protein phrog_117 major tail protein tail 1 10037 10777
YP_006990189.1 NC_019414_p74 hypothetical protein phrog_2355 unknown function unknown function -1 45852 46265
YP_006990122.1 NC_019414_p7 hypothetical protein phrog_193 head maturation protease head and packaging 1 5365 6474
YP_006990140.1 NC_019414_p25 endolysin phrog_1493 endolysin lysis 1 21877 22947
YP_006990164.1 NC_019414_p49 hypothetical protein phrog_10944 unknown function unknown function -1 35717 35959
YP_006990128.1 NC_019414_p13 hypothetical protein phrog_123 tail terminator connector 1 9527 10024
YP_006990170.1 NC_019414_p55 hypothetical protein phrog_4071 unknown function unknown function -1 40113 40376
YP_006990176.1 NC_019414_p61 hypothetical protein phrog_20471 unknown function unknown function -1 41857 42261
YP_006990149.1 NC_019414_p34 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 27055 27540
YP_006990187.1 NC_019414_p72 hypothetical protein phrog_3908 unknown function unknown function -1 45072 45299
YP_006990146.1 NC_019414_p31 hypothetical protein singleton unknown function unknown function 1 25859 25981