Genomic map of Stenotrophomonas phage IME15 (NC_019416)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019416
Definition
Stenotrophomonas phage IME15, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus; Stenotrophomonas virus IME15.
DB of origin
REFSEQ
Length
38513
Host Name
Stenotrophomonas maltophilia
Host domain
Bacteria
Is prophage?
undef
Number of proteins
45
%GC
53.65
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006990235.1 NC_019416_p33 phage tail fiber protein phrog_446 tail protein tail 1 22679 23269
YP_006990212.1 NC_019416_p10 hypothetical protein phrog_2585 nucleotide kinase other 1 8222 8530
YP_006990221.1 NC_019416_p19 hypothetical protein phrog_4023 unknown function unknown function 1 13058 13486
YP_006990215.1 NC_019416_p13 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8998 9690
YP_006990227.1 NC_019416_p25 hypothetical protein phrog_1447 unknown function unknown function 1 17494 17742
YP_006990225.1 NC_019416_p23 hypothetical protein phrog_4790 host RecBCD nuclease inhibitor moron, auxiliary metabolic gene and host takeover 1 16150 16380
YP_006990210.1 NC_019416_p8 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 6730 7752
YP_006990209.1 NC_019416_p7 hypothetical protein phrog_32835 unknown function unknown function 1 6401 6640
YP_006990204.1 NC_019416_p2 hypothetical protein phrog_8393 unknown function unknown function 1 1518 1655
YP_006990244.1 NC_019416_p42 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 35160 35438
YP_006990228.1 NC_019416_p26 hypothetical protein phrog_1391 unknown function unknown function 1 17746 18000
YP_006990246.1 NC_019416_p44 phage DNA maturation protein phrog_38 terminase large subunit head and packaging 1 35979 37739
YP_006990223.1 NC_019416_p21 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 15645 15947
YP_006990238.1 NC_019416_p36 internal virion protein phrog_805 internal virion protein head and packaging 1 26154 26744
YP_006990229.1 NC_019416_p27 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 17997 18407
YP_006990214.1 NC_019416_p12 bacterial RNA polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 8714 8986
YP_006990203.1 NC_019416_p1 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 870 1325
YP_006990208.1 NC_019416_p6 hypothetical protein phrog_2490 unknown function unknown function 1 6268 6390
YP_006990245.1 NC_019416_p43 phage endopeptidase phrog_1327 Rz-like spanin lysis 1 35505 35942
YP_006990233.1 NC_019416_p31 major capsid protein phrog_267 major head protein head and packaging 1 21405 22442
YP_006990226.1 NC_019416_p24 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16380 17294
YP_006990243.1 NC_019416_p41 phage holin class II phrog_920 holin lysis 1 34951 35154
YP_006990224.1 NC_019416_p22 phage HNS binding protein phrog_1334 unknown function unknown function 1 15944 16153
YP_006990247.1 NC_019416_p45 hypothetical protein phrog_2193 unknown function unknown function 1 37999 38151
YP_006990239.1 NC_019416_p37 phage internal (core) protein phrog_1339 internal virion protein head and packaging 1 26741 28996
YP_006990231.1 NC_019416_p29 phage collar protein phrog_449 head-tail adaptor connector 1 18706 20316
YP_006990213.1 NC_019416_p11 hypothetical protein phrog_1312 unknown function unknown function 1 8523 8714
YP_006990242.1 NC_019416_p40 hypothetical protein singleton unknown function unknown function 1 34813 34935
YP_006990236.1 NC_019416_p34 phage tail fiber protein phrog_457 tail protein tail 1 23281 25662
YP_006990218.1 NC_019416_p16 primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 10867 12378
YP_006990234.1 NC_019416_p32 hypothetical protein phrog_12582 head protein head and packaging 1 22442 22606
YP_006990220.1 NC_019416_p18 hypothetical protein phrog_2254 unknown function unknown function 1 12714 12986
YP_006990206.1 NC_019416_p4 protein kinase phrog_2828 serine-threonine kinase other 1 2268 3398
YP_006990219.1 NC_019416_p17 hypothetical protein phrog_1950 unknown function unknown function 1 12452 12670
YP_006990230.1 NC_019416_p28 host rangep rotein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18411 18692
YP_006990216.1 NC_019416_p14 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 9691 10146
YP_006990217.1 NC_019416_p15 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 10146 10601
YP_006990222.1 NC_019416_p20 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13506 15620
YP_006990237.1 NC_019416_p35 internal virion protein phrog_308 internal virion protein head and packaging 1 25742 26149
YP_006990241.1 NC_019416_p39 phage tail fibers phrog_4242 tail fiber protein tail 1 33050 34792
YP_006990207.1 NC_019416_p5 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3471 6122
YP_006990211.1 NC_019416_p9 hypothetical protein phrog_1777 unknown function unknown function 1 7956 8225
YP_006990232.1 NC_019416_p30 phage capsid and scaffold protein phrog_1052 head assembly head and packaging 1 20382 21305
YP_006990240.1 NC_019416_p38 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 29017 32979
YP_006990205.1 NC_019416_p3 hypothetical protein phrog_2568 ocr-like anti-restriction moron, auxiliary metabolic gene and host takeover 1 1673 2194