| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019416 |
Definition |
Stenotrophomonas phage IME15, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Teseptimavirus; Stenotrophomonas virus IME15. |
DB of origin |
REFSEQ |
Length |
38513 |
Host Name |
Stenotrophomonas maltophilia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
53.65 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006990235.1 | NC_019416_p33 | phage tail fiber protein | phrog_446 | tail protein | tail | 1 | 22679 | 23269 |
| YP_006990212.1 | NC_019416_p10 | hypothetical protein | phrog_2585 | nucleotide kinase | other | 1 | 8222 | 8530 |
| YP_006990221.1 | NC_019416_p19 | hypothetical protein | phrog_4023 | unknown function | unknown function | 1 | 13058 | 13486 |
| YP_006990215.1 | NC_019416_p13 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8998 | 9690 |
| YP_006990227.1 | NC_019416_p25 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17494 | 17742 |
| YP_006990225.1 | NC_019416_p23 | hypothetical protein | phrog_4790 | host RecBCD nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 16150 | 16380 |
| YP_006990210.1 | NC_019416_p8 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 6730 | 7752 |
| YP_006990209.1 | NC_019416_p7 | hypothetical protein | phrog_32835 | unknown function | unknown function | 1 | 6401 | 6640 |
| YP_006990204.1 | NC_019416_p2 | hypothetical protein | phrog_8393 | unknown function | unknown function | 1 | 1518 | 1655 |
| YP_006990244.1 | NC_019416_p42 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 35160 | 35438 |
| YP_006990228.1 | NC_019416_p26 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 17746 | 18000 |
| YP_006990246.1 | NC_019416_p44 | phage DNA maturation protein | phrog_38 | terminase large subunit | head and packaging | 1 | 35979 | 37739 |
| YP_006990223.1 | NC_019416_p21 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 15645 | 15947 |
| YP_006990238.1 | NC_019416_p36 | internal virion protein | phrog_805 | internal virion protein | head and packaging | 1 | 26154 | 26744 |
| YP_006990229.1 | NC_019416_p27 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 17997 | 18407 |
| YP_006990214.1 | NC_019416_p12 | bacterial RNA polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 8714 | 8986 |
| YP_006990203.1 | NC_019416_p1 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 870 | 1325 |
| YP_006990208.1 | NC_019416_p6 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6268 | 6390 |
| YP_006990245.1 | NC_019416_p43 | phage endopeptidase | phrog_1327 | Rz-like spanin | lysis | 1 | 35505 | 35942 |
| YP_006990233.1 | NC_019416_p31 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 21405 | 22442 |
| YP_006990226.1 | NC_019416_p24 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16380 | 17294 |
| YP_006990243.1 | NC_019416_p41 | phage holin class II | phrog_920 | holin | lysis | 1 | 34951 | 35154 |
| YP_006990224.1 | NC_019416_p22 | phage HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 15944 | 16153 |
| YP_006990247.1 | NC_019416_p45 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 37999 | 38151 |
| YP_006990239.1 | NC_019416_p37 | phage internal (core) protein | phrog_1339 | internal virion protein | head and packaging | 1 | 26741 | 28996 |
| YP_006990231.1 | NC_019416_p29 | phage collar protein | phrog_449 | head-tail adaptor | connector | 1 | 18706 | 20316 |
| YP_006990213.1 | NC_019416_p11 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 8523 | 8714 |
| YP_006990242.1 | NC_019416_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34813 | 34935 |
| YP_006990236.1 | NC_019416_p34 | phage tail fiber protein | phrog_457 | tail protein | tail | 1 | 23281 | 25662 |
| YP_006990218.1 | NC_019416_p16 | primase/helicase protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 10867 | 12378 |
| YP_006990234.1 | NC_019416_p32 | hypothetical protein | phrog_12582 | head protein | head and packaging | 1 | 22442 | 22606 |
| YP_006990220.1 | NC_019416_p18 | hypothetical protein | phrog_2254 | unknown function | unknown function | 1 | 12714 | 12986 |
| YP_006990206.1 | NC_019416_p4 | protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2268 | 3398 |
| YP_006990219.1 | NC_019416_p17 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 12452 | 12670 |
| YP_006990230.1 | NC_019416_p28 | host rangep rotein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18411 | 18692 |
| YP_006990216.1 | NC_019416_p14 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9691 | 10146 |
| YP_006990217.1 | NC_019416_p15 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 10146 | 10601 |
| YP_006990222.1 | NC_019416_p20 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13506 | 15620 |
| YP_006990237.1 | NC_019416_p35 | internal virion protein | phrog_308 | internal virion protein | head and packaging | 1 | 25742 | 26149 |
| YP_006990241.1 | NC_019416_p39 | phage tail fibers | phrog_4242 | tail fiber protein | tail | 1 | 33050 | 34792 |
| YP_006990207.1 | NC_019416_p5 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3471 | 6122 |
| YP_006990211.1 | NC_019416_p9 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 7956 | 8225 |
| YP_006990232.1 | NC_019416_p30 | phage capsid and scaffold protein | phrog_1052 | head assembly | head and packaging | 1 | 20382 | 21305 |
| YP_006990240.1 | NC_019416_p38 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29017 | 32979 |
| YP_006990205.1 | NC_019416_p3 | hypothetical protein | phrog_2568 | ocr-like anti-restriction | moron, auxiliary metabolic gene and host takeover | 1 | 1673 | 2194 |