| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019417 |
Definition |
Salmonella phage SPN19, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus. |
DB of origin |
REFSEQ |
Length |
59203 |
Host Name |
Salmonella sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
72 |
%GC |
56.52 |
Number of singletons |
0 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006990315.1 | NC_019417_p68 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 53405 | 54742 |
| YP_006990252.1 | NC_019417_p5 | hypothetical protein | phrog_8635 | unknown function | unknown function | -1 | 2580 | 2801 |
| YP_006990253.1 | NC_019417_p6 | hypothetical protein | phrog_9514 | unknown function | unknown function | -1 | 2798 | 3346 |
| YP_006990299.1 | NC_019417_p52 | Ig-like domain-containing protein | phrog_807 | major tail protein with Ig-like domain | tail | -1 | 38449 | 39588 |
| YP_006990287.1 | NC_019417_p40 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 22715 | 23734 |
| YP_006990311.1 | NC_019417_p64 | SNF2 domain-containing protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 48837 | 50366 |
| YP_006990255.1 | NC_019417_p8 | hypothetical protein | phrog_10310 | unknown function | unknown function | -1 | 3572 | 4195 |
| YP_006990305.1 | NC_019417_p58 | decorator protein D | phrog_49 | head decoration | head and packaging | -1 | 42528 | 42947 |
| YP_006990291.1 | NC_019417_p44 | hypothetical protein | phrog_6284 | tail protein | tail | -1 | 26478 | 30368 |
| YP_006990264.1 | NC_019417_p17 | hypothetical protein | phrog_7200 | unknown function | unknown function | 1 | 8579 | 8812 |
| YP_006990296.1 | NC_019417_p49 | tape measure protein | phrog_2335 | tail length tape measure protein | tail | -1 | 33361 | 37656 |
| YP_006990272.1 | NC_019417_p25 | hypothetical protein | phrog_8705 | unknown function | unknown function | 1 | 13556 | 13795 |
| YP_006990312.1 | NC_019417_p65 | VRR-NUC domain-containing protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 50359 | 50646 |
| YP_006990300.1 | NC_019417_p53 | hypothetical protein | phrog_5078 | tail terminator | connector | -1 | 39602 | 40105 |
| YP_006990309.1 | NC_019417_p62 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | -1 | 46216 | 48291 |
| YP_006990262.1 | NC_019417_p15 | hypothetical protein | phrog_7965 | unknown function | unknown function | 1 | 7181 | 7522 |
| YP_006990259.1 | NC_019417_p12 | hypothetical protein | phrog_6647 | unknown function | unknown function | 1 | 5989 | 6360 |
| YP_006990281.1 | NC_019417_p34 | hypothetical protein | phrog_1275 | Rz-like spanin | lysis | -1 | 17835 | 18038 |
| YP_006990268.1 | NC_019417_p21 | hypothetical protein | phrog_8386 | unknown function | unknown function | 1 | 10696 | 11796 |
| YP_006990269.1 | NC_019417_p22 | N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 11796 | 12482 |
| YP_006990270.1 | NC_019417_p23 | hypothetical protein | phrog_8209 | unknown function | unknown function | 1 | 12560 | 13378 |
| YP_006990250.1 | NC_019417_p3 | hypothetical protein | phrog_8059 | unknown function | unknown function | -1 | 1041 | 1247 |
| YP_006990288.1 | NC_019417_p41 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 23748 | 24710 |
| YP_006990313.1 | NC_019417_p66 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 50648 | 52687 |
| YP_006990260.1 | NC_019417_p13 | hypothetical protein | phrog_7942 | unknown function | unknown function | 1 | 6432 | 6872 |
| YP_006990301.1 | NC_019417_p54 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | -1 | 40102 | 40728 |
| YP_006990273.1 | NC_019417_p26 | hypothetical protein | phrog_6247 | DNA topoisomerase | DNA, RNA and nucleotide metabolism | 1 | 13921 | 14679 |
| YP_006990284.1 | NC_019417_p37 | endolysin 2 | phrog_7686 | Rz-like spanin | lysis | -1 | 18933 | 19271 |
| YP_006990286.1 | NC_019417_p39 | hypothetical protein | phrog_10924 | unknown function | unknown function | -1 | 21474 | 22700 |
| YP_006990290.1 | NC_019417_p43 | hypothetical protein | phrog_7049 | tail fiber protein | tail | -1 | 25738 | 26403 |
| YP_006990292.1 | NC_019417_p45 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | -1 | 30358 | 30597 |
| YP_006990263.1 | NC_019417_p16 | recombination-associated protein RdgC | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 7503 | 8576 |
| YP_006990317.1 | NC_019417_p70 | hypothetical protein | phrog_7721 | unknown function | unknown function | -1 | 55127 | 55534 |
| YP_006990283.1 | NC_019417_p36 | endolysin 1 | phrog_873 | endolysin | head and packaging | -1 | 18216 | 18929 |
| YP_006990285.1 | NC_019417_p38 | hypothetical protein | phrog_7226 | unknown function | unknown function | -1 | 19335 | 21464 |
| YP_006990294.1 | NC_019417_p47 | tail assembly protein 2 | phrog_778 | tail assembly protein | tail | -1 | 30839 | 31657 |
| YP_006990282.1 | NC_019417_p35 | hypothetical protein | phrog_15395 | tail protein | tail | 1 | 18040 | 18210 |
| YP_006990254.1 | NC_019417_p7 | hypothetical protein | phrog_7744 | unknown function | unknown function | -1 | 3357 | 3560 |
| YP_006990316.1 | NC_019417_p69 | hypothetical protein | phrog_8318 | unknown function | unknown function | -1 | 54735 | 55064 |
| YP_006990276.1 | NC_019417_p29 | hypothetical protein | phrog_9301 | unknown function | unknown function | 1 | 15541 | 15852 |
| YP_006990306.1 | NC_019417_p59 | prohead protease ClpP | phrog_53 | head maturation protease | head and packaging | -1 | 42962 | 44122 |
| YP_006990314.1 | NC_019417_p67 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 52754 | 53350 |
| YP_006990278.1 | NC_019417_p31 | hypothetical protein | phrog_8098 | unknown function | unknown function | 1 | 16303 | 17016 |
| YP_006990261.1 | NC_019417_p14 | hypothetical protein | phrog_7734 | unknown function | unknown function | 1 | 6859 | 7194 |
| YP_006990256.1 | NC_019417_p9 | hypothetical protein | phrog_2385 | unknown function | unknown function | -1 | 4198 | 4398 |
| YP_006990295.1 | NC_019417_p48 | hypothetical protein | phrog_1082 | tail assembly protein | tail | -1 | 31667 | 33355 |
| YP_006990271.1 | NC_019417_p24 | hypothetical protein | phrog_9067 | unknown function | unknown function | 1 | 13389 | 13583 |
| YP_006990308.1 | NC_019417_p61 | head-to-tail joining protein W | phrog_75 | head-tail adaptor Ad1 | connector | -1 | 45951 | 46205 |
| YP_006990265.1 | NC_019417_p18 | hypothetical protein | phrog_7587 | unknown function | unknown function | 1 | 8817 | 9092 |
| YP_006990277.1 | NC_019417_p30 | hypothetical protein | phrog_8264 | unknown function | unknown function | 1 | 15849 | 16301 |
| YP_006990303.1 | NC_019417_p56 | hypothetical protein | phrog_7559 | unknown function | unknown function | -1 | 41096 | 41389 |
| YP_006990302.1 | NC_019417_p55 | hypothetical protein | phrog_4858 | unknown function | unknown function | -1 | 40728 | 41093 |
| YP_006990267.1 | NC_019417_p20 | hypothetical protein | phrog_8641 | unknown function | unknown function | 1 | 10025 | 10699 |
| YP_006990248.1 | NC_019417_p1 | hypothetical protein | phrog_8116 | unknown function | unknown function | -1 | 553 | 804 |
| YP_006990304.1 | NC_019417_p57 | major capsid protein E | phrog_29 | major head protein | head and packaging | -1 | 41451 | 42515 |
| YP_006990307.1 | NC_019417_p60 | lambda family portal protein B | phrog_21 | portal protein | head and packaging | -1 | 44275 | 45813 |
| YP_006990298.1 | NC_019417_p51 | hypothetical protein | phrog_5260 | tail protein | tail | -1 | 37891 | 38352 |
| YP_006990251.1 | NC_019417_p4 | hypothetical protein | phrog_10087 | unknown function | unknown function | -1 | 1300 | 2454 |
| YP_006990257.1 | NC_019417_p10 | hypothetical protein | phrog_3199 | unknown function | unknown function | -1 | 4413 | 4952 |
| YP_006990258.1 | NC_019417_p11 | hypothetical protein | phrog_4445 | unknown function | unknown function | -1 | 4971 | 5228 |
| YP_006990249.1 | NC_019417_p2 | hypothetical protein | phrog_7646 | unknown function | unknown function | -1 | 797 | 1048 |
| YP_006990274.1 | NC_019417_p27 | hypothetical protein | phrog_9072 | thymidylate synthase complementing protein | DNA, RNA and nucleotide metabolism | 1 | 14673 | 15182 |
| YP_006990275.1 | NC_019417_p28 | hypothetical protein | phrog_3012 | unknown function | unknown function | 1 | 15263 | 15544 |
| YP_006990279.1 | NC_019417_p32 | hypothetical protein | phrog_18367 | unknown function | unknown function | 1 | 17092 | 17376 |
| YP_006990280.1 | NC_019417_p33 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 17373 | 17834 |
| YP_006990297.1 | NC_019417_p50 | hypothetical protein | phrog_9221 | tail length tape measure protein | tail | -1 | 37649 | 37846 |
| YP_006990319.1 | NC_019417_p72 | primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 56052 | 58634 |
| YP_006990266.1 | NC_019417_p19 | hypothetical protein | phrog_6886 | unknown function | unknown function | 1 | 9288 | 10028 |
| YP_006990318.1 | NC_019417_p71 | hypothetical protein | phrog_7401 | unknown function | unknown function | 1 | 55774 | 56055 |
| YP_006990293.1 | NC_019417_p46 | tail assembly protein 1 | phrog_1180 | tail assembly chaperone | tail | -1 | 30597 | 30827 |
| YP_006990310.1 | NC_019417_p63 | terminase small subunit | phrog_141 | terminase small subunit | head and packaging | -1 | 48281 | 48850 |
| YP_006990289.1 | NC_019417_p42 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 24721 | 25728 |