Genomic map of Salmonella virus SPN19 (NC_019417)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019417
Definition
Salmonella phage SPN19, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus.
DB of origin
REFSEQ
Length
59203
Host Name
Salmonella sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
56.52
Number of singletons
0
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006990315.1 NC_019417_p68 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 53405 54742
YP_006990252.1 NC_019417_p5 hypothetical protein phrog_8635 unknown function unknown function -1 2580 2801
YP_006990253.1 NC_019417_p6 hypothetical protein phrog_9514 unknown function unknown function -1 2798 3346
YP_006990299.1 NC_019417_p52 Ig-like domain-containing protein phrog_807 major tail protein with Ig-like domain tail -1 38449 39588
YP_006990287.1 NC_019417_p40 hypothetical protein phrog_2448 unknown function unknown function -1 22715 23734
YP_006990311.1 NC_019417_p64 SNF2 domain-containing protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 48837 50366
YP_006990255.1 NC_019417_p8 hypothetical protein phrog_10310 unknown function unknown function -1 3572 4195
YP_006990305.1 NC_019417_p58 decorator protein D phrog_49 head decoration head and packaging -1 42528 42947
YP_006990291.1 NC_019417_p44 hypothetical protein phrog_6284 tail protein tail -1 26478 30368
YP_006990264.1 NC_019417_p17 hypothetical protein phrog_7200 unknown function unknown function 1 8579 8812
YP_006990296.1 NC_019417_p49 tape measure protein phrog_2335 tail length tape measure protein tail -1 33361 37656
YP_006990272.1 NC_019417_p25 hypothetical protein phrog_8705 unknown function unknown function 1 13556 13795
YP_006990312.1 NC_019417_p65 VRR-NUC domain-containing protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 50359 50646
YP_006990300.1 NC_019417_p53 hypothetical protein phrog_5078 tail terminator connector -1 39602 40105
YP_006990309.1 NC_019417_p62 terminase large subunit phrog_15 terminase large subunit head and packaging -1 46216 48291
YP_006990262.1 NC_019417_p15 hypothetical protein phrog_7965 unknown function unknown function 1 7181 7522
YP_006990259.1 NC_019417_p12 hypothetical protein phrog_6647 unknown function unknown function 1 5989 6360
YP_006990281.1 NC_019417_p34 hypothetical protein phrog_1275 Rz-like spanin lysis -1 17835 18038
YP_006990268.1 NC_019417_p21 hypothetical protein phrog_8386 unknown function unknown function 1 10696 11796
YP_006990269.1 NC_019417_p22 N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 11796 12482
YP_006990270.1 NC_019417_p23 hypothetical protein phrog_8209 unknown function unknown function 1 12560 13378
YP_006990250.1 NC_019417_p3 hypothetical protein phrog_8059 unknown function unknown function -1 1041 1247
YP_006990288.1 NC_019417_p41 hypothetical protein phrog_2448 unknown function unknown function -1 23748 24710
YP_006990313.1 NC_019417_p66 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 50648 52687
YP_006990260.1 NC_019417_p13 hypothetical protein phrog_7942 unknown function unknown function 1 6432 6872
YP_006990301.1 NC_019417_p54 hypothetical protein phrog_27 tail completion or Neck1 protein connector -1 40102 40728
YP_006990273.1 NC_019417_p26 hypothetical protein phrog_6247 DNA topoisomerase DNA, RNA and nucleotide metabolism 1 13921 14679
YP_006990284.1 NC_019417_p37 endolysin 2 phrog_7686 Rz-like spanin lysis -1 18933 19271
YP_006990286.1 NC_019417_p39 hypothetical protein phrog_10924 unknown function unknown function -1 21474 22700
YP_006990290.1 NC_019417_p43 hypothetical protein phrog_7049 tail fiber protein tail -1 25738 26403
YP_006990292.1 NC_019417_p45 hypothetical protein phrog_1196 tail assembly chaperone tail -1 30358 30597
YP_006990263.1 NC_019417_p16 recombination-associated protein RdgC phrog_724 exonuclease recombination-associated DNA, RNA and nucleotide metabolism 1 7503 8576
YP_006990317.1 NC_019417_p70 hypothetical protein phrog_7721 unknown function unknown function -1 55127 55534
YP_006990283.1 NC_019417_p36 endolysin 1 phrog_873 endolysin head and packaging -1 18216 18929
YP_006990285.1 NC_019417_p38 hypothetical protein phrog_7226 unknown function unknown function -1 19335 21464
YP_006990294.1 NC_019417_p47 tail assembly protein 2 phrog_778 tail assembly protein tail -1 30839 31657
YP_006990282.1 NC_019417_p35 hypothetical protein phrog_15395 tail protein tail 1 18040 18210
YP_006990254.1 NC_019417_p7 hypothetical protein phrog_7744 unknown function unknown function -1 3357 3560
YP_006990316.1 NC_019417_p69 hypothetical protein phrog_8318 unknown function unknown function -1 54735 55064
YP_006990276.1 NC_019417_p29 hypothetical protein phrog_9301 unknown function unknown function 1 15541 15852
YP_006990306.1 NC_019417_p59 prohead protease ClpP phrog_53 head maturation protease head and packaging -1 42962 44122
YP_006990314.1 NC_019417_p67 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 52754 53350
YP_006990278.1 NC_019417_p31 hypothetical protein phrog_8098 unknown function unknown function 1 16303 17016
YP_006990261.1 NC_019417_p14 hypothetical protein phrog_7734 unknown function unknown function 1 6859 7194
YP_006990256.1 NC_019417_p9 hypothetical protein phrog_2385 unknown function unknown function -1 4198 4398
YP_006990295.1 NC_019417_p48 hypothetical protein phrog_1082 tail assembly protein tail -1 31667 33355
YP_006990271.1 NC_019417_p24 hypothetical protein phrog_9067 unknown function unknown function 1 13389 13583
YP_006990308.1 NC_019417_p61 head-to-tail joining protein W phrog_75 head-tail adaptor Ad1 connector -1 45951 46205
YP_006990265.1 NC_019417_p18 hypothetical protein phrog_7587 unknown function unknown function 1 8817 9092
YP_006990277.1 NC_019417_p30 hypothetical protein phrog_8264 unknown function unknown function 1 15849 16301
YP_006990303.1 NC_019417_p56 hypothetical protein phrog_7559 unknown function unknown function -1 41096 41389
YP_006990302.1 NC_019417_p55 hypothetical protein phrog_4858 unknown function unknown function -1 40728 41093
YP_006990267.1 NC_019417_p20 hypothetical protein phrog_8641 unknown function unknown function 1 10025 10699
YP_006990248.1 NC_019417_p1 hypothetical protein phrog_8116 unknown function unknown function -1 553 804
YP_006990304.1 NC_019417_p57 major capsid protein E phrog_29 major head protein head and packaging -1 41451 42515
YP_006990307.1 NC_019417_p60 lambda family portal protein B phrog_21 portal protein head and packaging -1 44275 45813
YP_006990298.1 NC_019417_p51 hypothetical protein phrog_5260 tail protein tail -1 37891 38352
YP_006990251.1 NC_019417_p4 hypothetical protein phrog_10087 unknown function unknown function -1 1300 2454
YP_006990257.1 NC_019417_p10 hypothetical protein phrog_3199 unknown function unknown function -1 4413 4952
YP_006990258.1 NC_019417_p11 hypothetical protein phrog_4445 unknown function unknown function -1 4971 5228
YP_006990249.1 NC_019417_p2 hypothetical protein phrog_7646 unknown function unknown function -1 797 1048
YP_006990274.1 NC_019417_p27 hypothetical protein phrog_9072 thymidylate synthase complementing protein DNA, RNA and nucleotide metabolism 1 14673 15182
YP_006990275.1 NC_019417_p28 hypothetical protein phrog_3012 unknown function unknown function 1 15263 15544
YP_006990279.1 NC_019417_p32 hypothetical protein phrog_18367 unknown function unknown function 1 17092 17376
YP_006990280.1 NC_019417_p33 hypothetical protein phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 17373 17834
YP_006990297.1 NC_019417_p50 hypothetical protein phrog_9221 tail length tape measure protein tail -1 37649 37846
YP_006990319.1 NC_019417_p72 primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 56052 58634
YP_006990266.1 NC_019417_p19 hypothetical protein phrog_6886 unknown function unknown function 1 9288 10028
YP_006990318.1 NC_019417_p71 hypothetical protein phrog_7401 unknown function unknown function 1 55774 56055
YP_006990293.1 NC_019417_p46 tail assembly protein 1 phrog_1180 tail assembly chaperone tail -1 30597 30827
YP_006990310.1 NC_019417_p63 terminase small subunit phrog_141 terminase small subunit head and packaging -1 48281 48850
YP_006990289.1 NC_019417_p42 hypothetical protein phrog_2448 unknown function unknown function -1 24721 25728