| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019418 |
Definition |
Streptococcus phage phiNJ2, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
37282 |
Host Name |
Streptococcus suis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
39.41 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006990324.1 | NC_019418_p5 | integral membrane protein DUF106 | phrog_4257 | unknown function | unknown function | -1 | 1611 | 2066 |
| YP_006990361.1 | NC_019418_p42 | hypothetical protein | phrog_8736 | unknown function | unknown function | -1 | 28914 | 29192 |
| YP_006990374.1 | NC_019418_p55 | protease | phrog_9505 | unknown function | unknown function | 1 | 35297 | 35905 |
| YP_006990343.1 | NC_019418_p24 | phage portal protein | phrog_533 | portal protein | head and packaging | -1 | 19199 | 20782 |
| YP_006990363.1 | NC_019418_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29710 | 29931 |
| YP_006990329.1 | NC_019418_p10 | envelope protein | phrog_1204 | tail protein | tail | -1 | 9789 | 12965 |
| YP_006990337.1 | NC_019418_p18 | phosphate-selective porin O and P | phrog_541 | head-tail adaptor | connector | -1 | 15611 | 16006 |
| YP_006990366.1 | NC_019418_p47 | hypothetical protein | phrog_10455 | unknown function | unknown function | -1 | 31504 | 31830 |
| YP_006990342.1 | NC_019418_p23 | phage minor capsid protein 2 | phrog_581 | minor head protein | head and packaging | -1 | 18045 | 19196 |
| YP_006990370.1 | NC_019418_p51 | hypothetical protein | phrog_3624 | unknown function | unknown function | -1 | 33734 | 33847 |
| YP_006990367.1 | NC_019418_p48 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31845 | 32543 |
| YP_006990354.1 | NC_019418_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25774 | 25896 |
| YP_006990359.1 | NC_019418_p40 | DNA binding protein | phrog_3947 | unknown function | unknown function | -1 | 27920 | 28123 |
| YP_006990328.1 | NC_019418_p9 | phage tail protein | phrog_202 | distal tail protein Dit | tail | -1 | 8290 | 9792 |
| YP_006990348.1 | NC_019418_p29 | hypothetical protein | phrog_3511 | unknown function | unknown function | -1 | 23885 | 24265 |
| YP_006990320.1 | NC_019418_p1 | recombinase | phrog_95 | integrase | integration and excision | 1 | 1 | 196 |
| YP_006990320.1 | NC_019418_p1 | recombinase | phrog_95 | integrase | integration and excision | 1 | 36039 | 37282 |
| YP_006990344.1 | NC_019418_p25 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 20795 | 22108 |
| YP_006990347.1 | NC_019418_p28 | hypothetical protein | phrog_8680 | unknown function | unknown function | -1 | 23146 | 23817 |
| YP_006990326.1 | NC_019418_p7 | hypothetical protein | phrog_372 | tail protein | tail | -1 | 2404 | 4467 |
| YP_006990321.1 | NC_019418_p2 | hypothetical protein | phrog_2133 | unknown function | unknown function | -1 | 260 | 445 |
| YP_006990362.1 | NC_019418_p43 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 29208 | 29720 |
| YP_006990358.1 | NC_019418_p39 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 27489 | 27923 |
| YP_006990323.1 | NC_019418_p4 | holin protein | phrog_881 | holin | lysis | -1 | 1433 | 1636 |
| YP_006990345.1 | NC_019418_p26 | phage terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 22095 | 22574 |
| YP_006990341.1 | NC_019418_p22 | hypothetical protein | phrog_194 | head scaffolding protein | head and packaging | -1 | 17281 | 17898 |
| YP_006990369.1 | NC_019418_p50 | hypothetical protein | phrog_1456 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 33374 | 33691 |
| YP_006990325.1 | NC_019418_p6 | hypothetical protein | phrog_2566 | unknown function | unknown function | -1 | 2079 | 2360 |
| YP_006990371.1 | NC_019418_p52 | hypothetical protein | phrog_8322 | unknown function | unknown function | -1 | 33856 | 34029 |
| YP_006990339.1 | NC_019418_p20 | hypothetical protein | phrog_2250 | unknown function | unknown function | -1 | 16253 | 16438 |
| YP_006990340.1 | NC_019418_p21 | hypothetical protein | phrog_544 | major head protein | head and packaging | -1 | 16438 | 17277 |
| YP_006990336.1 | NC_019418_p17 | minor capsid protein | phrog_793 | head-tail adaptor | connector | -1 | 15295 | 15621 |
| YP_006990327.1 | NC_019418_p8 | antireceptor protein | phrog_588 | tail fiber protein and host specificity | tail | -1 | 4481 | 8290 |
| YP_006990355.1 | NC_019418_p36 | hypothetical protein | phrog_17605 | unknown function | unknown function | -1 | 25896 | 26282 |
| YP_006990338.1 | NC_019418_p19 | spermine/spermidine synthase | phrog_2910 | unknown function | unknown function | -1 | 16048 | 16275 |
| YP_006990353.1 | NC_019418_p34 | hypothetical protein | phrog_884 | unknown function | unknown function | -1 | 25468 | 25770 |
| YP_006990334.1 | NC_019418_p15 | minor capsid protein | phrog_913 | minor head protein | head and packaging | -1 | 14536 | 14943 |
| YP_006990364.1 | NC_019418_p45 | mazG nucleotide pyrophosphohydrolase | phrog_1992 | MazG-like pyrophosphatase | other | -1 | 29921 | 30442 |
| YP_006990373.1 | NC_019418_p54 | peptidase S24-like protein | phrog_4 | transcriptional repressor | transcription regulation | 1 | 34567 | 35322 |
| YP_006990356.1 | NC_019418_p37 | hypothetical protein | phrog_1029 | unknown function | unknown function | -1 | 26302 | 27039 |
| YP_006990372.1 | NC_019418_p53 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 34134 | 34400 |
| YP_006990335.1 | NC_019418_p16 | minor capsid protein | phrog_556 | minor head protein | head and packaging | -1 | 14945 | 15295 |
| YP_006990352.1 | NC_019418_p33 | hypothetical protein | phrog_4960 | unknown function | unknown function | -1 | 25291 | 25467 |
| YP_006990365.1 | NC_019418_p46 | hypothetical protein | phrog_674 | unknown function | unknown function | -1 | 30432 | 31493 |
| YP_006990357.1 | NC_019418_p38 | hypothetical protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | -1 | 27041 | 27478 |
| YP_006990360.1 | NC_019418_p41 | C-5 cytosine-specific DNA methylase | phrog_2882 | DNA methyltransferase | other | -1 | 28120 | 28869 |
| YP_006990322.1 | NC_019418_p3 | phage amidase protein | phrog_1309 | endolysin | lysis | -1 | 593 | 1303 |
| YP_006990346.1 | NC_019418_p27 | hypothetical protein | phrog_9479 | unknown function | unknown function | -1 | 22766 | 23149 |
| YP_006990350.1 | NC_019418_p31 | endodeoxyribonuclease RusA | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 24638 | 25057 |
| YP_006990368.1 | NC_019418_p49 | hypothetical protein | phrog_7964 | unknown function | unknown function | -1 | 32547 | 33122 |
| YP_006990349.1 | NC_019418_p30 | yopX protein | phrog_98 | unknown function | unknown function | -1 | 24262 | 24654 |
| YP_006990331.1 | NC_019418_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13274 | 13684 |
| YP_006990332.1 | NC_019418_p13 | hypothetical protein | phrog_1061 | unknown function | unknown function | -1 | 13684 | 14052 |
| YP_006990333.1 | NC_019418_p14 | hypothetical protein | phrog_820 | major tail protein | tail | -1 | 14074 | 14532 |
| YP_006990351.1 | NC_019418_p32 | hypothetical protein | phrog_18515 | unknown function | unknown function | -1 | 25054 | 25284 |
| YP_006990330.1 | NC_019418_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13095 | 13217 |