| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019419 |
Definition |
Enterobacteria phage JL1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus. |
DB of origin |
REFSEQ |
Length |
43457 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
54.77 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006990382.1 | NC_019419_p55 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 39039 | 39740 |
| YP_006990397.1 | NC_019419_p10 | hypothetical protein | phrog_27442 | unknown function | unknown function | -1 | 5210 | 5479 |
| YP_006990381.1 | NC_019419_p54 | phage structural protein | phrog_247 | major head protein | head and packaging | -1 | 37841 | 38941 |
| YP_006990412.1 | NC_019419_p26 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15914 | 16195 |
| YP_006990401.1 | NC_019419_p15 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6460 | 6804 |
| YP_006990418.1 | NC_019419_p33 | DNA methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 19516 | 20001 |
| YP_006990430.1 | NC_019419_p46 | phage tail length tape-measure protein 1 | phrog_24 | tail length tape measure protein | tail | -1 | 31246 | 33888 |
| YP_006990425.1 | NC_019419_p41 | phage tail fiber tip protein | phrog_31 | central tail fiber J | tail | -1 | 25031 | 28477 |
| YP_006990376.1 | NC_019419_p49 | phage major tail protein | phrog_584 | major tail protein | tail | -1 | 35020 | 35745 |
| YP_006990395.1 | NC_019419_p8 | holin-like class II protein | phrog_2359 | holin | lysis | -1 | 4359 | 4649 |
| YP_006990398.1 | NC_019419_p11 | hypothetical protein | phrog_15977 | unknown function | unknown function | -1 | 5476 | 5604 |
| YP_006990399.1 | NC_019419_p13 | hypothetical protein | phrog_9839 | unknown function | unknown function | -1 | 5895 | 6221 |
| YP_006990384.1 | NC_019419_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40235 | 40459 |
| YP_006990393.1 | NC_019419_p6 | lysozyme | phrog_7 | endolysin | lysis | -1 | 3639 | 4130 |
| YP_006990411.1 | NC_019419_p25 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13626 | 15917 |
| YP_006990387.1 | NC_019419_p60 | phage structural protein | phrog_145 | portal protein | head and packaging | -1 | 41933 | 43453 |
| YP_006990427.1 | NC_019419_p43 | phage minor tail protein | phrog_30 | minor tail protein | tail | -1 | 29082 | 29822 |
| YP_006990402.1 | NC_019419_p16 | helicase-primase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | -1 | 6877 | 9141 |
| YP_006990396.1 | NC_019419_p9 | hypothetical protein | phrog_2531 | unknown function | unknown function | -1 | 4703 | 5002 |
| YP_006990405.1 | NC_019419_p19 | hypothetical protein | phrog_4965 | unknown function | unknown function | 1 | 10476 | 10727 |
| YP_007697671.1 | NC_019419_p27 | hypothetical protein | phrog_5558 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | 1 | 16236 | 16409 |
| YP_006990422.1 | NC_019419_p38 | tail tip protein | phrog_1980 | tail fiber protein | tail | -1 | 21938 | 23734 |
| YP_006990414.1 | NC_019419_p29 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 16676 | 18100 |
| YP_006990377.1 | NC_019419_p50 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 35807 | 36229 |
| YP_006990426.1 | NC_019419_p42 | phage tail assembly protein I | phrog_32 | tail assembly protein | tail | -1 | 28474 | 29091 |
| YP_006990410.1 | NC_019419_p24 | hypothetical protein | phrog_10102 | unknown function | unknown function | 1 | 13459 | 13629 |
| YP_006990416.1 | NC_019419_p31 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 18789 | 19112 |
| YP_006990378.1 | NC_019419_p51 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 36229 | 36822 |
| YP_006990429.1 | NC_019419_p45 | minor tail protein | phrog_9922 | minor tail protein | tail | -1 | 30610 | 31209 |
| YP_007697673.1 | NC_019419_p47 | hypothetical protein | phrog_14875 | unknown function | unknown function | -1 | 34274 | 34369 |
| YP_006990417.1 | NC_019419_p32 | hypothetical protein | phrog_10530 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 19194 | 19529 |
| YP_006990394.1 | NC_019419_p7 | holin-like class I protein | phrog_2508 | holin | lysis | -1 | 4117 | 4362 |
| YP_006990391.1 | NC_019419_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3268 | 3450 |
| YP_006990379.1 | NC_019419_p52 | phage structural protein | phrog_161 | head closure Hc1 | connector | -1 | 36824 | 37183 |
| YP_006990408.1 | NC_019419_p22 | hypothetical protein | phrog_11211 | unknown function | unknown function | 1 | 12339 | 12581 |
| YP_006990400.1 | NC_019419_p14 | hypothetical protein | phrog_3623 | unknown function | unknown function | -1 | 6218 | 6397 |
| YP_006990420.1 | NC_019419_p36 | hypothetical protein | phrog_9871 | unknown function | unknown function | 1 | 20775 | 21290 |
| YP_006990421.1 | NC_019419_p37 | hypothetical protein | phrog_10558 | unknown function | unknown function | 1 | 21332 | 21907 |
| YP_006990413.1 | NC_019419_p28 | hypothetical protein | phrog_9291 | unknown function | unknown function | 1 | 16447 | 16671 |
| YP_006990383.1 | NC_019419_p56 | hypothetical protein | phrog_24635 | unknown function | unknown function | 1 | 39866 | 40195 |
| YP_006990403.1 | NC_019419_p17 | hypothetical protein | phrog_9366 | transposase | integration and excision | -1 | 9152 | 9481 |
| YP_006990407.1 | NC_019419_p21 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 10916 | 12346 |
| YP_006990415.1 | NC_019419_p30 | hypothetical protein | phrog_757 | DNA methyltransferase | other | 1 | 18097 | 18792 |
| YP_006990419.1 | NC_019419_p35 | hypothetical protein | phrog_415 | polynucleotide kinase | other | 1 | 20203 | 20673 |
| YP_006990390.1 | NC_019419_p3 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 2075 | 3217 |
| YP_006990385.1 | NC_019419_p58 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | -1 | 40524 | 40853 |
| YP_006990392.1 | NC_019419_p5 | hypothetical protein | phrog_11068 | unknown function | unknown function | -1 | 3455 | 3622 |
| YP_006990424.1 | NC_019419_p40 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 24039 | 25004 |
| YP_006990423.1 | NC_019419_p39 | phage lipoprotein | phrog_4281 | unknown function | unknown function | 1 | 23815 | 24036 |
| YP_006990389.1 | NC_019419_p2 | hypothetical protein | phrog_3064 | terminase | head and packaging | -1 | 1393 | 1965 |
| YP_006990409.1 | NC_019419_p23 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 12657 | 13400 |
| YP_006990375.1 | NC_019419_p48 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | -1 | 34588 | 34950 |
| YP_006990428.1 | NC_019419_p44 | phage minor tail protein L | phrog_18 | minor tail protein | tail | -1 | 29825 | 30613 |
| YP_006990404.1 | NC_019419_p18 | hypothetical protein | phrog_3127 | unknown function | unknown function | 1 | 9705 | 10427 |
| YP_006990380.1 | NC_019419_p53 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 37282 | 37812 |
| YP_007697670.1 | NC_019419_p12 | hypothetical protein | phrog_12533 | unknown function | unknown function | -1 | 5616 | 5885 |
| YP_007697672.1 | NC_019419_p34 | hypothetical protein | phrog_10685 | unknown function | unknown function | 1 | 19982 | 20206 |
| YP_006990406.1 | NC_019419_p20 | hypothetical protein | phrog_9934 | unknown function | unknown function | 1 | 10728 | 10916 |
| YP_006990388.1 | NC_019419_p1 | terminase | phrog_2 | terminase large subunit | head and packaging | -1 | 8 | 1393 |
| YP_006990386.1 | NC_019419_p59 | phage head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | -1 | 40846 | 41949 |