Genomic map of Escherichia virus JL1 (NC_019419)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019419
Definition
Enterobacteria phage JL1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus.
DB of origin
REFSEQ
Length
43457
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
54.77
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006990382.1 NC_019419_p55 hypothetical protein phrog_206 head scaffolding protein head and packaging -1 39039 39740
YP_006990397.1 NC_019419_p10 hypothetical protein phrog_27442 unknown function unknown function -1 5210 5479
YP_006990381.1 NC_019419_p54 phage structural protein phrog_247 major head protein head and packaging -1 37841 38941
YP_006990412.1 NC_019419_p26 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 15914 16195
YP_006990401.1 NC_019419_p15 hypothetical protein singleton unknown function unknown function -1 6460 6804
YP_006990418.1 NC_019419_p33 DNA methyltransferase phrog_111 DNA methyltransferase other 1 19516 20001
YP_006990430.1 NC_019419_p46 phage tail length tape-measure protein 1 phrog_24 tail length tape measure protein tail -1 31246 33888
YP_006990425.1 NC_019419_p41 phage tail fiber tip protein phrog_31 central tail fiber J tail -1 25031 28477
YP_006990376.1 NC_019419_p49 phage major tail protein phrog_584 major tail protein tail -1 35020 35745
YP_006990395.1 NC_019419_p8 holin-like class II protein phrog_2359 holin lysis -1 4359 4649
YP_006990398.1 NC_019419_p11 hypothetical protein phrog_15977 unknown function unknown function -1 5476 5604
YP_006990399.1 NC_019419_p13 hypothetical protein phrog_9839 unknown function unknown function -1 5895 6221
YP_006990384.1 NC_019419_p57 hypothetical protein singleton unknown function unknown function 1 40235 40459
YP_006990393.1 NC_019419_p6 lysozyme phrog_7 endolysin lysis -1 3639 4130
YP_006990411.1 NC_019419_p25 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 13626 15917
YP_006990387.1 NC_019419_p60 phage structural protein phrog_145 portal protein head and packaging -1 41933 43453
YP_006990427.1 NC_019419_p43 phage minor tail protein phrog_30 minor tail protein tail -1 29082 29822
YP_006990402.1 NC_019419_p16 helicase-primase phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism -1 6877 9141
YP_006990396.1 NC_019419_p9 hypothetical protein phrog_2531 unknown function unknown function -1 4703 5002
YP_006990405.1 NC_019419_p19 hypothetical protein phrog_4965 unknown function unknown function 1 10476 10727
YP_007697671.1 NC_019419_p27 hypothetical protein phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover 1 16236 16409
YP_006990422.1 NC_019419_p38 tail tip protein phrog_1980 tail fiber protein tail -1 21938 23734
YP_006990414.1 NC_019419_p29 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 16676 18100
YP_006990377.1 NC_019419_p50 hypothetical protein phrog_179 tail terminator connector -1 35807 36229
YP_006990426.1 NC_019419_p42 phage tail assembly protein I phrog_32 tail assembly protein tail -1 28474 29091
YP_006990410.1 NC_019419_p24 hypothetical protein phrog_10102 unknown function unknown function 1 13459 13629
YP_006990416.1 NC_019419_p31 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 18789 19112
YP_006990378.1 NC_019419_p51 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 36229 36822
YP_006990429.1 NC_019419_p45 minor tail protein phrog_9922 minor tail protein tail -1 30610 31209
YP_007697673.1 NC_019419_p47 hypothetical protein phrog_14875 unknown function unknown function -1 34274 34369
YP_006990417.1 NC_019419_p32 hypothetical protein phrog_10530 DNA ligase DNA, RNA and nucleotide metabolism 1 19194 19529
YP_006990394.1 NC_019419_p7 holin-like class I protein phrog_2508 holin lysis -1 4117 4362
YP_006990391.1 NC_019419_p4 hypothetical protein singleton unknown function unknown function 1 3268 3450
YP_006990379.1 NC_019419_p52 phage structural protein phrog_161 head closure Hc1 connector -1 36824 37183
YP_006990408.1 NC_019419_p22 hypothetical protein phrog_11211 unknown function unknown function 1 12339 12581
YP_006990400.1 NC_019419_p14 hypothetical protein phrog_3623 unknown function unknown function -1 6218 6397
YP_006990420.1 NC_019419_p36 hypothetical protein phrog_9871 unknown function unknown function 1 20775 21290
YP_006990421.1 NC_019419_p37 hypothetical protein phrog_10558 unknown function unknown function 1 21332 21907
YP_006990413.1 NC_019419_p28 hypothetical protein phrog_9291 unknown function unknown function 1 16447 16671
YP_006990383.1 NC_019419_p56 hypothetical protein phrog_24635 unknown function unknown function 1 39866 40195
YP_006990403.1 NC_019419_p17 hypothetical protein phrog_9366 transposase integration and excision -1 9152 9481
YP_006990407.1 NC_019419_p21 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 10916 12346
YP_006990415.1 NC_019419_p30 hypothetical protein phrog_757 DNA methyltransferase other 1 18097 18792
YP_006990419.1 NC_019419_p35 hypothetical protein phrog_415 polynucleotide kinase other 1 20203 20673
YP_006990390.1 NC_019419_p3 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 2075 3217
YP_006990385.1 NC_019419_p58 hypothetical protein phrog_2536 Rz-like spanin lysis -1 40524 40853
YP_006990392.1 NC_019419_p5 hypothetical protein phrog_11068 unknown function unknown function -1 3455 3622
YP_006990424.1 NC_019419_p40 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover 1 24039 25004
YP_006990423.1 NC_019419_p39 phage lipoprotein phrog_4281 unknown function unknown function 1 23815 24036
YP_006990389.1 NC_019419_p2 hypothetical protein phrog_3064 terminase head and packaging -1 1393 1965
YP_006990409.1 NC_019419_p23 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 12657 13400
YP_006990375.1 NC_019419_p48 hypothetical protein phrog_569 tail length tape measure protein tail -1 34588 34950
YP_006990428.1 NC_019419_p44 phage minor tail protein L phrog_18 minor tail protein tail -1 29825 30613
YP_006990404.1 NC_019419_p18 hypothetical protein phrog_3127 unknown function unknown function 1 9705 10427
YP_006990380.1 NC_019419_p53 hypothetical protein phrog_477 head-tail adaptor Ad1 connector -1 37282 37812
YP_007697670.1 NC_019419_p12 hypothetical protein phrog_12533 unknown function unknown function -1 5616 5885
YP_007697672.1 NC_019419_p34 hypothetical protein phrog_10685 unknown function unknown function 1 19982 20206
YP_006990406.1 NC_019419_p20 hypothetical protein phrog_9934 unknown function unknown function 1 10728 10916
YP_006990388.1 NC_019419_p1 terminase phrog_2 terminase large subunit head and packaging -1 8 1393
YP_006990386.1 NC_019419_p59 phage head morphogenesis protein phrog_241 head morphogenesis head and packaging -1 40846 41949