| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019421 |
Definition |
Clostridium phage phiMMP02, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus. |
DB of origin |
REFSEQ |
Length |
48396 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
76 |
%GC |
29.55 |
Number of singletons |
1 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006990532.1 | NC_019421_p54 | hypothetical protein | phrog_2219 | unknown function | unknown function | 1 | 37530 | 37847 |
| YP_006990488.1 | NC_019421_p10 | tail component | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8221 | 8631 |
| YP_006990520.1 | NC_019421_p42 | lambda repressor-like DNA-binding protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 32927 | 33142 |
| YP_006990549.1 | NC_019421_p71 | ASCH domain protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 45152 | 45382 |
| YP_006990523.1 | NC_019421_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34409 | 34504 |
| YP_006990534.1 | NC_019421_p56 | essential recombination function protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 38449 | 39057 |
| YP_006990498.1 | NC_019421_p20 | XkdQ-related protein | phrog_400 | tail protein | tail | 1 | 18110 | 19072 |
| YP_006990505.1 | NC_019421_p27 | hypothetical protein | phrog_1626 | rhodanese-related sulfurtransferase | other | 1 | 24383 | 24676 |
| YP_006990521.1 | NC_019421_p43 | hypothetical protein | phrog_13216 | unknown function | unknown function | 1 | 33428 | 33559 |
| YP_006990548.1 | NC_019421_p70 | hypothetical protein | phrog_4476 | unknown function | unknown function | 1 | 44857 | 45129 |
| YP_006990487.1 | NC_019421_p9 | hypothetical protein | phrog_2405 | unknown function | unknown function | 1 | 7842 | 8219 |
| YP_006990513.1 | NC_019421_p35 | hypothetical protein | phrog_9125 | unknown function | unknown function | 1 | 28157 | 28648 |
| YP_006990552.1 | NC_019421_p74 | hypothetical protein | phrog_7415 | unknown function | unknown function | 1 | 46324 | 46566 |
| YP_006990507.1 | NC_019421_p29 | hypothetical protein | phrog_4184 | unknown function | unknown function | 1 | 24891 | 25829 |
| YP_006990533.1 | NC_019421_p55 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 37930 | 38439 |
| YP_006990538.1 | NC_019421_p60 | YopX | phrog_98 | unknown function | unknown function | 1 | 40685 | 41098 |
| YP_006990517.1 | NC_019421_p39 | regulatory protein | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 30726 | 31115 |
| YP_006990535.1 | NC_019421_p57 | phage replication protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 39067 | 39948 |
| YP_006990529.1 | NC_019421_p51 | phage regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 36675 | 36872 |
| YP_006990490.1 | NC_019421_p12 | hypothetical protein | phrog_1939 | unknown function | unknown function | 1 | 9466 | 9669 |
| YP_006990482.1 | NC_019421_p4 | head morphogenesis protein | phrog_1657 | head morphogenesis | head and packaging | 1 | 3645 | 4658 |
| YP_006990550.1 | NC_019421_p72 | hypothetical protein | phrog_1672 | unknown function | unknown function | 1 | 45434 | 45934 |
| YP_006990546.1 | NC_019421_p68 | hypothetical protein | phrog_1974 | unknown function | unknown function | 1 | 43592 | 44596 |
| YP_006990479.1 | NC_019421_p1 | terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 62 | 763 |
| YP_006990497.1 | NC_019421_p19 | peptidoglycan-binding LysM protein | phrog_380 | endolysin | lysis | 1 | 17442 | 18113 |
| YP_006990496.1 | NC_019421_p18 | hypothetical protein | phrog_11408 | unknown function | unknown function | 1 | 16630 | 17373 |
| YP_006990480.1 | NC_019421_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 756 | 2165 |
| YP_006990491.1 | NC_019421_p13 | tail sheath | phrog_279 | tail sheath | tail | 1 | 9671 | 11092 |
| YP_006990484.1 | NC_019421_p6 | hypothetical protein | phrog_122 | head decoration | head and packaging | 1 | 6028 | 6411 |
| YP_006990510.1 | NC_019421_p32 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 26589 | 26819 |
| YP_006990492.1 | NC_019421_p14 | XkdM-related protein | phrog_365 | tail protein | tail | 1 | 11108 | 11521 |
| YP_006990525.1 | NC_019421_p47 | phage repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 34980 | 35174 |
| YP_006990501.1 | NC_019421_p23 | baseplate J family protein | phrog_6 | baseplate wedge subunit | tail | 1 | 19872 | 21008 |
| YP_006990506.1 | NC_019421_p28 | hypothetical protein | phrog_1243 | unknown function | unknown function | 1 | 24676 | 24858 |
| YP_006990481.1 | NC_019421_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2156 | 3658 |
| YP_006990518.1 | NC_019421_p40 | regulatory protein | phrog_1077 | transcriptional regulator | transcription regulation | 1 | 31208 | 31489 |
| YP_006990541.1 | NC_019421_p63 | hypothetical protein | phrog_2963 | unknown function | unknown function | 1 | 41676 | 41816 |
| YP_006990528.1 | NC_019421_p50 | hypothetical protein | phrog_5079 | unknown function | unknown function | -1 | 36464 | 36613 |
| YP_006990539.1 | NC_019421_p61 | hypothetical protein | phrog_4601 | unknown function | unknown function | 1 | 41085 | 41336 |
| YP_006990547.1 | NC_019421_p69 | hypothetical protein | phrog_2994 | unknown function | unknown function | 1 | 44605 | 44772 |
| YP_006990489.1 | NC_019421_p11 | hypothetical protein | phrog_2146 | unknown function | unknown function | 1 | 8632 | 9453 |
| YP_006990531.1 | NC_019421_p53 | hypothetical protein | phrog_11749 | unknown function | unknown function | 1 | 37188 | 37292 |
| YP_006990527.1 | NC_019421_p49 | hypothetical protein | phrog_9735 | unknown function | unknown function | 1 | 36094 | 36474 |
| YP_006990511.1 | NC_019421_p33 | holin | phrog_1129 | holin | lysis | 1 | 26838 | 27095 |
| YP_006990485.1 | NC_019421_p7 | hypothetical protein | phrog_3116 | unknown function | unknown function | 1 | 6430 | 7467 |
| YP_006990544.1 | NC_019421_p66 | DNA-cytosine methyltransferase | phrog_116 | DNA methyltransferase | other | 1 | 42218 | 43291 |
| YP_006990499.1 | NC_019421_p21 | hypothetical protein | phrog_2403 | unknown function | unknown function | 1 | 19065 | 19430 |
| YP_006990508.1 | NC_019421_p30 | hypothetical protein | phrog_3834 | unknown function | unknown function | 1 | 26119 | 26418 |
| YP_006990512.1 | NC_019421_p34 | endolysin | phrog_435 | endolysin | lysis | 1 | 27095 | 27907 |
| YP_006990551.1 | NC_019421_p73 | RusA endonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45924 | 46367 |
| YP_006990495.1 | NC_019421_p17 | tail tape measure | phrog_1272 | tail length tape measure protein | tail | 1 | 12273 | 16547 |
| YP_006990504.1 | NC_019421_p26 | hypothetical protein | phrog_1589 | unknown function | unknown function | 1 | 22684 | 24366 |
| YP_006990493.1 | NC_019421_p15 | XkdN-related protein | phrog_389 | tail protein XkdN-like | tail | 1 | 11605 | 12096 |
| YP_006990516.1 | NC_019421_p38 | hypothetical protein | phrog_738 | unknown function | unknown function | 1 | 30075 | 30218 |
| YP_006990483.1 | NC_019421_p5 | hypothetical protein | phrog_3219 | unknown function | unknown function | 1 | 4678 | 6012 |
| YP_006990530.1 | NC_019421_p52 | hypothetical protein | phrog_989 | unknown function | unknown function | 1 | 36911 | 37117 |
| YP_006990543.1 | NC_019421_p65 | hypothetical protein | phrog_3565 | unknown function | unknown function | 1 | 41932 | 42108 |
| YP_006990540.1 | NC_019421_p62 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 41354 | 41707 |
| YP_006990536.1 | NC_019421_p58 | hypothetical protein | phrog_3253 | unknown function | unknown function | 1 | 40009 | 40182 |
| YP_006990502.1 | NC_019421_p24 | XkdT-related protein | phrog_521 | tail protein | tail | 1 | 21005 | 21634 |
| YP_006990509.1 | NC_019421_p31 | XkdX-related protein | phrog_134 | unknown function | unknown function | 1 | 26420 | 26557 |
| YP_006990526.1 | NC_019421_p48 | phage antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 35216 | 36010 |
| YP_006990554.1 | NC_019421_p76 | phage repressor | phrog_463 | anti-repressor | transcription regulation | 1 | 47718 | 48395 |
| YP_006990514.1 | NC_019421_p36 | hypothetical protein | phrog_9105 | unknown function | unknown function | 1 | 28650 | 29216 |
| YP_006990519.1 | NC_019421_p41 | integrase | phrog_1 | integrase | integration and excision | -1 | 31804 | 32850 |
| YP_006990537.1 | NC_019421_p59 | single-strand DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40198 | 40614 |
| YP_006990515.1 | NC_019421_p37 | hypothetical protein | phrog_2569 | unknown function | unknown function | -1 | 29627 | 29815 |
| YP_006990553.1 | NC_019421_p75 | sigma factor | phrog_36 | transcriptional regulator | transcription regulation | 1 | 46671 | 47177 |
| YP_006990522.1 | NC_019421_p44 | lambda repressor-like DNA-binding protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 33576 | 33977 |
| YP_006990503.1 | NC_019421_p25 | tail fiber | phrog_1162 | tail fiber protein | tail | 1 | 21647 | 22669 |
| YP_006990545.1 | NC_019421_p67 | hypothetical protein | phrog_2462 | unknown function | unknown function | 1 | 43371 | 43580 |
| YP_006990542.1 | NC_019421_p64 | hypothetical protein | phrog_6827 | unknown function | unknown function | 1 | 41813 | 41929 |
| YP_006990524.1 | NC_019421_p46 | phage repressor, XRE family | phrog_3 | transcriptional repressor | transcription regulation | -1 | 34649 | 34867 |
| YP_006990486.1 | NC_019421_p8 | hypothetical protein | phrog_3029 | unknown function | unknown function | 1 | 7507 | 7845 |
| YP_006990500.1 | NC_019421_p22 | XkdS-related protein | phrog_120 | baseplate wedge subunit | tail | 1 | 19405 | 19863 |
| YP_006990494.1 | NC_019421_p16 | hypothetical protein | phrog_4503 | unknown function | unknown function | 1 | 12102 | 12254 |