Genomic map of Clostridium phage phiMMP02 (NC_019421)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019421
Definition
Clostridium phage phiMMP02, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
DB of origin
REFSEQ
Length
48396
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
76
%GC
29.55
Number of singletons
1
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006990532.1 NC_019421_p54 hypothetical protein phrog_2219 unknown function unknown function 1 37530 37847
YP_006990488.1 NC_019421_p10 tail component phrog_5 tail completion or Neck1 protein connector 1 8221 8631
YP_006990520.1 NC_019421_p42 lambda repressor-like DNA-binding protein phrog_3 transcriptional repressor transcription regulation -1 32927 33142
YP_006990549.1 NC_019421_p71 ASCH domain protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 45152 45382
YP_006990523.1 NC_019421_p45 hypothetical protein singleton unknown function unknown function 1 34409 34504
YP_006990534.1 NC_019421_p56 essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 38449 39057
YP_006990498.1 NC_019421_p20 XkdQ-related protein phrog_400 tail protein tail 1 18110 19072
YP_006990505.1 NC_019421_p27 hypothetical protein phrog_1626 rhodanese-related sulfurtransferase other 1 24383 24676
YP_006990521.1 NC_019421_p43 hypothetical protein phrog_13216 unknown function unknown function 1 33428 33559
YP_006990548.1 NC_019421_p70 hypothetical protein phrog_4476 unknown function unknown function 1 44857 45129
YP_006990487.1 NC_019421_p9 hypothetical protein phrog_2405 unknown function unknown function 1 7842 8219
YP_006990513.1 NC_019421_p35 hypothetical protein phrog_9125 unknown function unknown function 1 28157 28648
YP_006990552.1 NC_019421_p74 hypothetical protein phrog_7415 unknown function unknown function 1 46324 46566
YP_006990507.1 NC_019421_p29 hypothetical protein phrog_4184 unknown function unknown function 1 24891 25829
YP_006990533.1 NC_019421_p55 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 37930 38439
YP_006990538.1 NC_019421_p60 YopX phrog_98 unknown function unknown function 1 40685 41098
YP_006990517.1 NC_019421_p39 regulatory protein phrog_1077 transcriptional regulator transcription regulation 1 30726 31115
YP_006990535.1 NC_019421_p57 phage replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 39067 39948
YP_006990529.1 NC_019421_p51 phage regulator phrog_3 transcriptional repressor transcription regulation 1 36675 36872
YP_006990490.1 NC_019421_p12 hypothetical protein phrog_1939 unknown function unknown function 1 9466 9669
YP_006990482.1 NC_019421_p4 head morphogenesis protein phrog_1657 head morphogenesis head and packaging 1 3645 4658
YP_006990550.1 NC_019421_p72 hypothetical protein phrog_1672 unknown function unknown function 1 45434 45934
YP_006990546.1 NC_019421_p68 hypothetical protein phrog_1974 unknown function unknown function 1 43592 44596
YP_006990479.1 NC_019421_p1 terminase small subunit phrog_509 terminase small subunit head and packaging 1 62 763
YP_006990497.1 NC_019421_p19 peptidoglycan-binding LysM protein phrog_380 endolysin lysis 1 17442 18113
YP_006990496.1 NC_019421_p18 hypothetical protein phrog_11408 unknown function unknown function 1 16630 17373
YP_006990480.1 NC_019421_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 756 2165
YP_006990491.1 NC_019421_p13 tail sheath phrog_279 tail sheath tail 1 9671 11092
YP_006990484.1 NC_019421_p6 hypothetical protein phrog_122 head decoration head and packaging 1 6028 6411
YP_006990510.1 NC_019421_p32 hypothetical protein phrog_1193 hemolysin other 1 26589 26819
YP_006990492.1 NC_019421_p14 XkdM-related protein phrog_365 tail protein tail 1 11108 11521
YP_006990525.1 NC_019421_p47 phage repressor phrog_3 transcriptional repressor transcription regulation 1 34980 35174
YP_006990501.1 NC_019421_p23 baseplate J family protein phrog_6 baseplate wedge subunit tail 1 19872 21008
YP_006990506.1 NC_019421_p28 hypothetical protein phrog_1243 unknown function unknown function 1 24676 24858
YP_006990481.1 NC_019421_p3 portal protein phrog_64 portal protein head and packaging 1 2156 3658
YP_006990518.1 NC_019421_p40 regulatory protein phrog_1077 transcriptional regulator transcription regulation 1 31208 31489
YP_006990541.1 NC_019421_p63 hypothetical protein phrog_2963 unknown function unknown function 1 41676 41816
YP_006990528.1 NC_019421_p50 hypothetical protein phrog_5079 unknown function unknown function -1 36464 36613
YP_006990539.1 NC_019421_p61 hypothetical protein phrog_4601 unknown function unknown function 1 41085 41336
YP_006990547.1 NC_019421_p69 hypothetical protein phrog_2994 unknown function unknown function 1 44605 44772
YP_006990489.1 NC_019421_p11 hypothetical protein phrog_2146 unknown function unknown function 1 8632 9453
YP_006990531.1 NC_019421_p53 hypothetical protein phrog_11749 unknown function unknown function 1 37188 37292
YP_006990527.1 NC_019421_p49 hypothetical protein phrog_9735 unknown function unknown function 1 36094 36474
YP_006990511.1 NC_019421_p33 holin phrog_1129 holin lysis 1 26838 27095
YP_006990485.1 NC_019421_p7 hypothetical protein phrog_3116 unknown function unknown function 1 6430 7467
YP_006990544.1 NC_019421_p66 DNA-cytosine methyltransferase phrog_116 DNA methyltransferase other 1 42218 43291
YP_006990499.1 NC_019421_p21 hypothetical protein phrog_2403 unknown function unknown function 1 19065 19430
YP_006990508.1 NC_019421_p30 hypothetical protein phrog_3834 unknown function unknown function 1 26119 26418
YP_006990512.1 NC_019421_p34 endolysin phrog_435 endolysin lysis 1 27095 27907
YP_006990551.1 NC_019421_p73 RusA endonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 45924 46367
YP_006990495.1 NC_019421_p17 tail tape measure phrog_1272 tail length tape measure protein tail 1 12273 16547
YP_006990504.1 NC_019421_p26 hypothetical protein phrog_1589 unknown function unknown function 1 22684 24366
YP_006990493.1 NC_019421_p15 XkdN-related protein phrog_389 tail protein XkdN-like tail 1 11605 12096
YP_006990516.1 NC_019421_p38 hypothetical protein phrog_738 unknown function unknown function 1 30075 30218
YP_006990483.1 NC_019421_p5 hypothetical protein phrog_3219 unknown function unknown function 1 4678 6012
YP_006990530.1 NC_019421_p52 hypothetical protein phrog_989 unknown function unknown function 1 36911 37117
YP_006990543.1 NC_019421_p65 hypothetical protein phrog_3565 unknown function unknown function 1 41932 42108
YP_006990540.1 NC_019421_p62 hypothetical protein phrog_1310 unknown function unknown function 1 41354 41707
YP_006990536.1 NC_019421_p58 hypothetical protein phrog_3253 unknown function unknown function 1 40009 40182
YP_006990502.1 NC_019421_p24 XkdT-related protein phrog_521 tail protein tail 1 21005 21634
YP_006990509.1 NC_019421_p31 XkdX-related protein phrog_134 unknown function unknown function 1 26420 26557
YP_006990526.1 NC_019421_p48 phage antirepressor phrog_63 anti-repressor Ant transcription regulation 1 35216 36010
YP_006990554.1 NC_019421_p76 phage repressor phrog_463 anti-repressor transcription regulation 1 47718 48395
YP_006990514.1 NC_019421_p36 hypothetical protein phrog_9105 unknown function unknown function 1 28650 29216
YP_006990519.1 NC_019421_p41 integrase phrog_1 integrase integration and excision -1 31804 32850
YP_006990537.1 NC_019421_p59 single-strand DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 40198 40614
YP_006990515.1 NC_019421_p37 hypothetical protein phrog_2569 unknown function unknown function -1 29627 29815
YP_006990553.1 NC_019421_p75 sigma factor phrog_36 transcriptional regulator transcription regulation 1 46671 47177
YP_006990522.1 NC_019421_p44 lambda repressor-like DNA-binding protein phrog_8 transcriptional regulator transcription regulation -1 33576 33977
YP_006990503.1 NC_019421_p25 tail fiber phrog_1162 tail fiber protein tail 1 21647 22669
YP_006990545.1 NC_019421_p67 hypothetical protein phrog_2462 unknown function unknown function 1 43371 43580
YP_006990542.1 NC_019421_p64 hypothetical protein phrog_6827 unknown function unknown function 1 41813 41929
YP_006990524.1 NC_019421_p46 phage repressor, XRE family phrog_3 transcriptional repressor transcription regulation -1 34649 34867
YP_006990486.1 NC_019421_p8 hypothetical protein phrog_3029 unknown function unknown function 1 7507 7845
YP_006990500.1 NC_019421_p22 XkdS-related protein phrog_120 baseplate wedge subunit tail 1 19405 19863
YP_006990494.1 NC_019421_p16 hypothetical protein phrog_4503 unknown function unknown function 1 12102 12254