| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019442 |
Definition |
Escherichia phage TL-2011c, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Sepvirinae; Oslovirus. |
DB of origin |
REFSEQ |
Length |
60523 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
72 |
%GC |
50.29 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007001490.1 | NC_019442_p70 | hypothetical protein | phrog_20690 | unknown function | unknown function | 1 | 51518 | 53263 |
| YP_007001431.1 | NC_019442_p11 | hypothetical protein | phrog_631 | unknown function | unknown function | -1 | 6065 | 6580 |
| YP_007001421.1 | NC_019442_p1 | excisionase | phrog_539 | excisionase | integration and excision | -1 | 1360 | 1644 |
| YP_007001455.1 | NC_019442_p35 | late gene regulator Q | phrog_79 | anti-termination protein Q-like | transcription regulation | 1 | 23219 | 23653 |
| YP_007001480.1 | NC_019442_p60 | hypothetical protein | phrog_511 | internal virion protein | head and packaging | 1 | 43249 | 44874 |
| YP_007001486.1 | NC_019442_p66 | hypothetical protein | phrog_611 | unknown function | unknown function | 1 | 48805 | 49461 |
| YP_007001461.1 | NC_019442_p41 | hypothetical protein | phrog_311 | unknown function | unknown function | 1 | 28455 | 28727 |
| YP_007001428.1 | NC_019442_p8 | antirepressor | phrog_377 | anti-repressor Ant | transcription regulation | -1 | 3977 | 4606 |
| YP_007001434.1 | NC_019442_p14 | hypothetical protein | phrog_1363 | unknown function | unknown function | -1 | 7875 | 8270 |
| YP_007001422.1 | NC_019442_p2 | bacteriophage protein | phrog_285 | unknown function | unknown function | -1 | 1690 | 1941 |
| YP_007001462.1 | NC_019442_p42 | lysis protein S | phrog_20 | holin | lysis | 1 | 28804 | 29019 |
| YP_007001438.1 | NC_019442_p18 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 10241 | 10930 |
| YP_007001426.1 | NC_019442_p6 | adenine methylase | phrog_359 | DNA methyltransferase | other | -1 | 2867 | 3493 |
| YP_007001470.1 | NC_019442_p50 | hypothetical protein | phrog_23049 | unknown function | unknown function | 1 | 36675 | 36857 |
| YP_007001492.1 | NC_019442_p72 | hypothetical protein | phrog_17575 | unknown function | unknown function | -1 | 60083 | 60199 |
| YP_007001442.1 | NC_019442_p22 | hypothetical protein | phrog_294 | Kil protein for bacterial septation inhibition | other | -1 | 12489 | 12701 |
| YP_007001460.1 | NC_019442_p40 | hypothetical protein | phrog_494 | unknown function | unknown function | 1 | 28235 | 28414 |
| YP_007001441.1 | NC_019442_p21 | hypothetical protein | phrog_1635 | unknown function | unknown function | -1 | 12196 | 12417 |
| YP_007001487.1 | NC_019442_p67 | hypothetical protein | phrog_596 | unknown function | unknown function | 1 | 49464 | 49910 |
| YP_007001443.1 | NC_019442_p23 | hypothetical protein | phrog_1760 | anti-repressor | transcription regulation | -1 | 12772 | 13446 |
| YP_007001479.1 | NC_019442_p59 | hypothetical protein | phrog_2014 | unknown function | unknown function | 1 | 42767 | 42955 |
| YP_007001446.1 | NC_019442_p26 | modification methylase BsuBI | phrog_1600 | DNA methyltransferase | other | -1 | 16054 | 17433 |
| YP_007001439.1 | NC_019442_p19 | RecT | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 10927 | 11946 |
| YP_007001452.1 | NC_019442_p32 | hypothetical protein | phrog_319 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 22015 | 22464 |
| YP_007001435.1 | NC_019442_p15 | hypothetical protein | phrog_210 | unknown function | unknown function | -1 | 8347 | 9168 |
| YP_007001448.1 | NC_019442_p28 | hypothetical protein | phrog_35 | transcriptional repressor | transcription regulation | 1 | 18428 | 18631 |
| YP_007001450.1 | NC_019442_p30 | helicase domain protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 19534 | 21054 |
| YP_007001463.1 | NC_019442_p43 | lysozyme | phrog_7 | endolysin | lysis | 1 | 29024 | 29557 |
| YP_007001491.1 | NC_019442_p71 | hypothetical protein | phrog_616 | unknown function | unknown function | 1 | 53226 | 60017 |
| YP_007001424.1 | NC_019442_p4 | hypothetical protein | phrog_1888 | unknown function | unknown function | -1 | 2306 | 2659 |
| YP_007001466.1 | NC_019442_p46 | terminase small subunit | phrog_370 | terminase small subunit | head and packaging | 1 | 31054 | 31860 |
| YP_007001425.1 | NC_019442_p5 | hypothetical protein | phrog_292 | unknown function | unknown function | -1 | 2695 | 2907 |
| YP_007001478.1 | NC_019442_p58 | hypothetical protein | phrog_576 | tail fiber protein | tail | 1 | 42357 | 42626 |
| YP_007001482.1 | NC_019442_p62 | hypothetical protein | phrog_425 | membrane associated protein | moron, auxiliary metabolic gene and host takeover | 1 | 46438 | 47055 |
| YP_007001465.1 | NC_019442_p45 | Bor protein precursor | phrog_260 | Bor-like outer membrane protein | other | -1 | 30352 | 30645 |
| YP_007001445.1 | NC_019442_p25 | type II restriction enzyme BsuBI | phrog_1639 | restriction endonuclease | DNA, RNA and nucleotide metabolism | -1 | 15104 | 16057 |
| YP_007001427.1 | NC_019442_p7 | hypothetical protein | phrog_1680 | unknown function | unknown function | -1 | 3490 | 3921 |
| YP_007001458.1 | NC_019442_p38 | hypothetical protein | phrog_143 | unknown function | unknown function | 1 | 26163 | 28100 |
| YP_007001485.1 | NC_019442_p65 | hypothetical protein | phrog_610 | unknown function | unknown function | 1 | 48310 | 48711 |
| YP_007001468.1 | NC_019442_p48 | portal protein | phrog_156 | portal protein | head and packaging | 1 | 33547 | 35691 |
| YP_007001475.1 | NC_019442_p55 | hypothetical protein | phrog_399 | structural protein | head and packaging | 1 | 39598 | 40248 |
| YP_007001457.1 | NC_019442_p37 | Shiga toxin 2 subunit B | phrog_851 | Shiga toxin subunit B | moron, auxiliary metabolic gene and host takeover | 1 | 25408 | 25677 |
| YP_007001483.1 | NC_019442_p63 | outer membrane protein Lom precursor | phrog_108 | Lom outer membrane protein | other | 1 | 47146 | 47880 |
| YP_007001471.1 | NC_019442_p51 | hypothetical protein | phrog_334 | major head protein | head and packaging | 1 | 36881 | 38095 |
| YP_007001454.1 | NC_019442_p34 | phage NinH family protein | phrog_268 | unknown function | unknown function | 1 | 23032 | 23226 |
| YP_007001436.1 | NC_019442_p16 | hypothetical protein | phrog_204 | unknown function | unknown function | -1 | 9232 | 9579 |
| YP_007001473.1 | NC_019442_p53 | hypothetical protein | phrog_482 | unknown function | unknown function | 1 | 38590 | 39051 |
| YP_007001477.1 | NC_019442_p57 | tail fiber protein | phrog_366 | tail fiber protein | tail | 1 | 40607 | 42355 |
| YP_007001467.1 | NC_019442_p47 | large subunit terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 31841 | 33547 |
| YP_007001481.1 | NC_019442_p61 | hypothetical protein | phrog_496 | tail fiber protein | tail | 1 | 44871 | 46139 |
| YP_007001474.1 | NC_019442_p54 | hypothetical protein | phrog_437 | virion structural protein | head and packaging | 1 | 39035 | 39598 |
| YP_007001437.1 | NC_019442_p17 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 9654 | 10241 |
| YP_007001451.1 | NC_019442_p31 | phage DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 21044 | 22015 |
| YP_007001484.1 | NC_019442_p64 | hypothetical protein | phrog_251 | MokW-like host killing | moron, auxiliary metabolic gene and host takeover | 1 | 48113 | 48253 |
| YP_007001453.1 | NC_019442_p33 | hypothetical protein | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22472 | 23035 |
| YP_007001449.1 | NC_019442_p29 | hypothetical protein | phrog_1347 | unknown function | unknown function | 1 | 19163 | 19540 |
| YP_007001456.1 | NC_019442_p36 | Shiga toxin 2 subunit A | phrog_866 | Shiga toxin subunit A | moron, auxiliary metabolic gene and host takeover | 1 | 24437 | 25396 |
| YP_007001432.1 | NC_019442_p12 | hypothetical protein | phrog_1380 | unknown function | unknown function | -1 | 6770 | 6946 |
| YP_007001440.1 | NC_019442_p20 | hypothetical protein | phrog_1050 | gam-like host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | -1 | 11894 | 12175 |
| YP_007001472.1 | NC_019442_p52 | hypothetical protein | phrog_486 | virion structural protein | head and packaging | 1 | 38151 | 38540 |
| YP_007001429.1 | NC_019442_p9 | hypothetical protein | phrog_6904 | unknown function | unknown function | -1 | 4856 | 5140 |
| YP_007001447.1 | NC_019442_p27 | repressor protein CI | phrog_4 | transcriptional repressor | transcription regulation | -1 | 17619 | 18332 |
| YP_007001489.1 | NC_019442_p69 | hypothetical protein | phrog_601 | unknown function | unknown function | 1 | 50183 | 51448 |
| YP_007001433.1 | NC_019442_p13 | hypothetical protein | phrog_492 | unknown function | unknown function | -1 | 7119 | 7724 |
| YP_007001444.1 | NC_019442_p24 | phage regulatory protein, Rha family | phrog_995 | transcriptional regulator | transcription regulation | -1 | 13702 | 14349 |
| YP_007001430.1 | NC_019442_p10 | hypothetical protein | phrog_60 | unknown function | unknown function | -1 | 5496 | 6068 |
| YP_007001423.1 | NC_019442_p3 | hypothetical protein | phrog_1001 | unknown function | unknown function | -1 | 1929 | 2162 |
| YP_007001469.1 | NC_019442_p49 | hypothetical protein | phrog_479 | unknown function | unknown function | 1 | 35849 | 36688 |
| YP_007001464.1 | NC_019442_p44 | hypothetical protein | phrog_13 | Rz-like spanin | lysis | 1 | 29856 | 30320 |
| YP_007001476.1 | NC_019442_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40245 | 40610 |
| YP_007001459.1 | NC_019442_p39 | hypothetical protein | phrog_9558 | unknown function | unknown function | 1 | 28097 | 28222 |
| YP_007001488.1 | NC_019442_p68 | hypothetical protein | phrog_594 | unknown function | unknown function | 1 | 49921 | 50172 |