Genomic map of Lactobacillus virus c5 (NC_019449)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019449
Definition
Lactobacillus phage c5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cequinquevirus.
DB of origin
REFSEQ
Length
31841
Host Name
Lactobacillus delbrueckii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
42.01
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007002347.1 NC_019449_p10 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 7072 7368
YP_007002371.1 NC_019449_p32 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 22603 23094
YP_007002341.1 NC_019449_p4 hypothetical protein phrog_13845 unknown function unknown function 1 1844 2209
YP_007002349.1 NC_019449_p12 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7732 8163
YP_007002388.1 NC_019449_p49 endolysin phrog_291 endolysin lysis 1 30465 31370
YP_007002352.1 NC_019449_p15 hypothetical protein phrog_2115 tail protein tail 1 9101 9454
YP_007002346.1 NC_019449_p9 hypothetical protein phrog_6865 unknown function unknown function 1 6912 7079
YP_007002370.1 NC_019449_p31 hypothetical protein phrog_7566 unknown function unknown function 1 22323 22610
YP_007002377.1 NC_019449_p38 DNA replication protein phrog_678 replication initiation O-like DNA, RNA and nucleotide metabolism 1 25078 25854
YP_007002384.1 NC_019449_p45 hypothetical protein phrog_15092 unknown function unknown function 1 28917 29426
YP_007002348.1 NC_019449_p11 head-tail adaptor phrog_25 head closure Hc1 connector 1 7379 7732
YP_007002351.1 NC_019449_p14 major tail protein phrog_88 major tail protein tail 1 8512 9084
YP_007002339.1 NC_019449_p2 hypothetical protein phrog_842 beta-glucosyl-HMC-alpha-glucosyltransferase other 1 835 1713
YP_007002364.1 NC_019449_p25 hypothetical protein phrog_11717 unknown function unknown function 1 19524 20150
YP_007002342.1 NC_019449_p5 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2199 3878
YP_007002353.1 NC_019449_p16 tape measure protein phrog_58 tail length tape measure protein tail 1 9699 12605
YP_007002360.1 NC_019449_p21 hypothetical protein phrog_13632 unknown function unknown function 1 18399 18758
YP_007002389.1 NC_019449_p50 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 31367 31747
YP_007002368.1 NC_019449_p29 single-stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 21332 21793
YP_007002350.1 NC_019449_p13 hypothetical protein phrog_78 tail terminator connector 1 8156 8497
YP_007002378.1 NC_019449_p39 DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 25820 26638
YP_007002354.1 NC_019449_p17 tail component phrog_33 distal tail protein Dit tail 1 12617 13321
YP_007002345.1 NC_019449_p8 major head protein phrog_10 major head protein head and packaging 1 5707 6894
YP_007002385.1 NC_019449_p46 hypothetical protein phrog_14005 unknown function unknown function 1 29432 29605
YP_007002340.1 NC_019449_p3 hypothetical protein singleton unknown function unknown function 1 1710 1808
YP_007002363.1 NC_019449_p24 hypothetical protein phrog_15036 unknown function unknown function 1 19361 19531
YP_007002379.1 NC_019449_p40 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 26800 27609
YP_007002355.1 NC_019449_p18 hypothetical protein phrog_1084 unknown function unknown function 1 13318 13656
YP_007002372.1 NC_019449_p33 Holliday junction resolvase phrog_1682 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 23091 23456
YP_007002356.1 NC_019449_p19 glycerophosphoryl diester phosphodiesterase phrog_13515 phosphodiesterase other 1 13670 16303
YP_007002383.1 NC_019449_p44 hypothetical protein singleton unknown function unknown function 1 28465 28932
YP_007002369.1 NC_019449_p30 hypothetical protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 21803 22342
YP_007002382.1 NC_019449_p43 hypothetical protein phrog_13668 unknown function unknown function 1 28202 28468
YP_007002362.1 NC_019449_p23 Cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 19155 19358
YP_007002381.1 NC_019449_p42 hypothetical protein phrog_16790 unknown function unknown function 1 27985 28140
YP_007002386.1 NC_019449_p47 hypothetical protein phrog_23598 unknown function unknown function 1 29831 30061
YP_007002387.1 NC_019449_p48 holin phrog_1299 holin lysis 1 30179 30472
YP_007002380.1 NC_019449_p41 hypothetical protein phrog_15640 unknown function unknown function 1 27566 27985
YP_007002359.1 NC_019449_p20 antireceptor phrog_1067 minor head protein head and packaging 1 16323 18386
YP_007002361.1 NC_019449_p22 hypothetical protein phrog_31868 unknown function unknown function 1 18670 18897
YP_007002343.1 NC_019449_p6 portal protein phrog_12 portal protein head and packaging 1 3895 5109
YP_007002376.1 NC_019449_p37 hypothetical protein singleton unknown function unknown function 1 24727 25056
YP_007002375.1 NC_019449_p36 hypothetical protein phrog_13519 unknown function unknown function 1 24508 24660
YP_007002366.1 NC_019449_p27 hypothetical protein phrog_6244 unknown function unknown function 1 20415 20732
YP_007002373.1 NC_019449_p34 hypothetical protein singleton unknown function unknown function 1 23640 23915
YP_007002367.1 NC_019449_p28 hypothetical protein phrog_298 exonuclease DNA, RNA and nucleotide metabolism 1 20737 21342
YP_007002374.1 NC_019449_p35 hypothetical protein singleton unknown function unknown function 1 24197 24427
YP_007002365.1 NC_019449_p26 hypothetical protein phrog_14315 unknown function unknown function 1 20153 20422
YP_007002344.1 NC_019449_p7 ClpP protease phrog_80 head maturation protease head and packaging 1 5099 5704
YP_007002338.1 NC_019449_p1 ParB nuclease phrog_620 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 90 863