Genomic map of Pantoea phage LIMElight (NC_019454)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019454
Definition
Pantoea phage LIMElight, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Limelightvirus.
DB of origin
REFSEQ
Length
44546
Host Name
Pantoea agglomerans
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
53.99
Number of singletons
18
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007002881.1 NC_019454_p28 hypothetical protein phrog_1374 unknown function unknown function 1 15313 15501
YP_007002894.1 NC_019454_p41 major capsid protein phrog_267 major head protein head and packaging 1 25243 26241
YP_007002896.1 NC_019454_p43 tail tubular protein A phrog_446 tail protein tail 1 26528 27082
YP_007002897.1 NC_019454_p44 tail tubular protein B phrog_457 tail protein tail 1 27092 29416
YP_007002906.1 NC_019454_p53 hypothetical protein phrog_1804 Rz-like spanin lysis 1 42867 43277
YP_007002862.1 NC_019454_p9 hypothetical protein singleton unknown function unknown function 1 4089 4487
YP_007002867.1 NC_019454_p14 hypothetical protein singleton unknown function unknown function 1 5658 5912
YP_007002890.1 NC_019454_p37 hypothetical protein phrog_5167 unknown function unknown function 1 22054 22458
YP_007002904.1 NC_019454_p51 hypothetical protein phrog_14870 unknown function unknown function 1 41762 42667
YP_007002857.1 NC_019454_p4 hypothetical protein singleton unknown function unknown function 1 2575 2751
YP_007002876.1 NC_019454_p23 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 9339 10127
YP_007002855.1 NC_019454_p2 hypothetical protein singleton unknown function unknown function 1 1610 1804
YP_007002858.1 NC_019454_p5 hypothetical protein singleton unknown function unknown function 1 2748 2894
YP_007002901.1 NC_019454_p48 tail fiber protein/putative EPSdepolymerase phrog_4250 EPS depolymerase tail 1 37042 39606
YP_007002905.1 NC_019454_p52 hypothetical protein singleton unknown function unknown function 1 42679 42864
YP_007002885.1 NC_019454_p32 hypothetical protein phrog_6923 unknown function unknown function 1 17848 18039
YP_007002859.1 NC_019454_p6 hypothetical protein phrog_2226 SAM-dependent methyltransferase other 1 2966 3361
YP_007002856.1 NC_019454_p3 hypothetical protein phrog_5277 unknown function unknown function 1 1947 2498
YP_007002883.1 NC_019454_p30 hypothetical protein singleton unknown function unknown function 1 16543 16917
YP_007002864.1 NC_019454_p11 hypothetical protein singleton unknown function unknown function 1 4798 4944
YP_007002875.1 NC_019454_p22 hypothetical protein singleton unknown function unknown function 1 9091 9342
YP_007002907.1 NC_019454_p54 holin phrog_20 holin lysis 1 43274 43513
YP_007002866.1 NC_019454_p13 hypothetical protein singleton unknown function unknown function 1 5337 5603
YP_007002900.1 NC_019454_p47 internal virion protein phrog_342 internal virion protein with endolysin domain head and packaging 1 32910 37016
YP_007002902.1 NC_019454_p49 DNA maturase A phrog_891 terminase small subunit head and packaging 1 39616 39918
YP_007002888.1 NC_019454_p35 hypothetical protein phrog_801 dATP / dGTP pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 18952 19368
YP_007002899.1 NC_019454_p46 internal virion protein phrog_2083 internal virion lysozyme motif head and packaging 1 30117 32861
YP_007002886.1 NC_019454_p33 DNA endonuclease phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 18036 18467
YP_007002903.1 NC_019454_p50 DNA maturase B phrog_38 terminase large subunit head and packaging 1 39918 41762
YP_007002860.1 NC_019454_p7 hypothetical protein singleton unknown function unknown function 1 3426 3740
YP_007002877.1 NC_019454_p24 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 10115 11377
YP_007002861.1 NC_019454_p8 hypothetical protein phrog_32287 unknown function unknown function 1 3811 4089
YP_007002882.1 NC_019454_p29 hypothetical protein phrog_862 unknown function unknown function 1 15622 16479
YP_007002871.1 NC_019454_p18 hypothetical protein phrog_6167 unknown function unknown function 1 7090 7458
YP_007002865.1 NC_019454_p12 hypothetical protein singleton unknown function unknown function 1 5032 5337
YP_007002884.1 NC_019454_p31 DNA exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 16917 17861
YP_007002868.1 NC_019454_p15 hypothetical protein singleton unknown function unknown function 1 5912 6259
YP_007002880.1 NC_019454_p27 DNA polymerase II small subunit phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 14107 15303
YP_007002873.1 NC_019454_p20 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7686 8639
YP_007002887.1 NC_019454_p34 polynucleotide 5' kinase/3' phosphatase phrog_415 polynucleotide kinase other 1 18464 18955
YP_007002870.1 NC_019454_p17 hypothetical protein phrog_5136 unknown function unknown function 1 6915 7088
YP_007002854.1 NC_019454_p1 hypothetical protein singleton unknown function unknown function 1 1404 1613
YP_007002863.1 NC_019454_p10 hypothetical protein singleton unknown function unknown function 1 4557 4712
YP_007002892.1 NC_019454_p39 head-tail connector protein phrog_449 head-tail adaptor connector 1 22787 24376
YP_007002898.1 NC_019454_p45 internal virion protein phrog_4295 internal virion protein head and packaging 1 29418 30104
YP_007002874.1 NC_019454_p21 hypothetical protein phrog_36788 unknown function unknown function 1 8648 9094
YP_007002908.1 NC_019454_p55 endolysin phrog_7 endolysin lysis 1 43491 44138
YP_007002893.1 NC_019454_p40 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 24386 25219
YP_007002872.1 NC_019454_p19 hypothetical protein phrog_12821 unknown function unknown function 1 7462 7686
YP_007002895.1 NC_019454_p42 hypothetical protein singleton unknown function unknown function 1 26291 26470
YP_007002869.1 NC_019454_p16 hypothetical protein singleton unknown function unknown function 1 6323 6802
YP_007002879.1 NC_019454_p26 hypothetical protein singleton unknown function unknown function 1 13738 14019
YP_007002878.1 NC_019454_p25 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11399 13735
YP_007002891.1 NC_019454_p38 structural protein phrog_3112 virion structural protein head and packaging 1 22455 22778
YP_007002889.1 NC_019454_p36 DNA-dependent RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 19480 21936