functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
NC_019454 |
Definition |
Pantoea phage LIMElight, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Limelightvirus. |
DB of origin |
REFSEQ |
Length |
44546 |
Host Name |
Pantoea agglomerans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
53.99 |
Number of singletons |
18 |
Number of paralogs |
0 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
YP_007002881.1 | NC_019454_p28 | hypothetical protein | phrog_1374 | unknown function | unknown function | 1 | 15313 | 15501 |
YP_007002894.1 | NC_019454_p41 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 25243 | 26241 |
YP_007002896.1 | NC_019454_p43 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 26528 | 27082 |
YP_007002897.1 | NC_019454_p44 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 27092 | 29416 |
YP_007002906.1 | NC_019454_p53 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | 1 | 42867 | 43277 |
YP_007002862.1 | NC_019454_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4089 | 4487 |
YP_007002867.1 | NC_019454_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5658 | 5912 |
YP_007002890.1 | NC_019454_p37 | hypothetical protein | phrog_5167 | unknown function | unknown function | 1 | 22054 | 22458 |
YP_007002904.1 | NC_019454_p51 | hypothetical protein | phrog_14870 | unknown function | unknown function | 1 | 41762 | 42667 |
YP_007002857.1 | NC_019454_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2575 | 2751 |
YP_007002876.1 | NC_019454_p23 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 9339 | 10127 |
YP_007002855.1 | NC_019454_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1610 | 1804 |
YP_007002858.1 | NC_019454_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2748 | 2894 |
YP_007002901.1 | NC_019454_p48 | tail fiber protein/putative EPSdepolymerase | phrog_4250 | EPS depolymerase | tail | 1 | 37042 | 39606 |
YP_007002905.1 | NC_019454_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42679 | 42864 |
YP_007002885.1 | NC_019454_p32 | hypothetical protein | phrog_6923 | unknown function | unknown function | 1 | 17848 | 18039 |
YP_007002859.1 | NC_019454_p6 | hypothetical protein | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 2966 | 3361 |
YP_007002856.1 | NC_019454_p3 | hypothetical protein | phrog_5277 | unknown function | unknown function | 1 | 1947 | 2498 |
YP_007002883.1 | NC_019454_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16543 | 16917 |
YP_007002864.1 | NC_019454_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4798 | 4944 |
YP_007002875.1 | NC_019454_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9091 | 9342 |
YP_007002907.1 | NC_019454_p54 | holin | phrog_20 | holin | lysis | 1 | 43274 | 43513 |
YP_007002866.1 | NC_019454_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5337 | 5603 |
YP_007002900.1 | NC_019454_p47 | internal virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 32910 | 37016 |
YP_007002902.1 | NC_019454_p49 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 39616 | 39918 |
YP_007002888.1 | NC_019454_p35 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 18952 | 19368 |
YP_007002899.1 | NC_019454_p46 | internal virion protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 30117 | 32861 |
YP_007002886.1 | NC_019454_p33 | DNA endonuclease | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 18036 | 18467 |
YP_007002903.1 | NC_019454_p50 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 39918 | 41762 |
YP_007002860.1 | NC_019454_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3426 | 3740 |
YP_007002877.1 | NC_019454_p24 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 10115 | 11377 |
YP_007002861.1 | NC_019454_p8 | hypothetical protein | phrog_32287 | unknown function | unknown function | 1 | 3811 | 4089 |
YP_007002882.1 | NC_019454_p29 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 15622 | 16479 |
YP_007002871.1 | NC_019454_p18 | hypothetical protein | phrog_6167 | unknown function | unknown function | 1 | 7090 | 7458 |
YP_007002865.1 | NC_019454_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5032 | 5337 |
YP_007002884.1 | NC_019454_p31 | DNA exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 16917 | 17861 |
YP_007002868.1 | NC_019454_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5912 | 6259 |
YP_007002880.1 | NC_019454_p27 | DNA polymerase II small subunit | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14107 | 15303 |
YP_007002873.1 | NC_019454_p20 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7686 | 8639 |
YP_007002887.1 | NC_019454_p34 | polynucleotide 5' kinase/3' phosphatase | phrog_415 | polynucleotide kinase | other | 1 | 18464 | 18955 |
YP_007002870.1 | NC_019454_p17 | hypothetical protein | phrog_5136 | unknown function | unknown function | 1 | 6915 | 7088 |
YP_007002854.1 | NC_019454_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1404 | 1613 |
YP_007002863.1 | NC_019454_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4557 | 4712 |
YP_007002892.1 | NC_019454_p39 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 22787 | 24376 |
YP_007002898.1 | NC_019454_p45 | internal virion protein | phrog_4295 | internal virion protein | head and packaging | 1 | 29418 | 30104 |
YP_007002874.1 | NC_019454_p21 | hypothetical protein | phrog_36788 | unknown function | unknown function | 1 | 8648 | 9094 |
YP_007002908.1 | NC_019454_p55 | endolysin | phrog_7 | endolysin | lysis | 1 | 43491 | 44138 |
YP_007002893.1 | NC_019454_p40 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 24386 | 25219 |
YP_007002872.1 | NC_019454_p19 | hypothetical protein | phrog_12821 | unknown function | unknown function | 1 | 7462 | 7686 |
YP_007002895.1 | NC_019454_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26291 | 26470 |
YP_007002869.1 | NC_019454_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6323 | 6802 |
YP_007002879.1 | NC_019454_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13738 | 14019 |
YP_007002878.1 | NC_019454_p25 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11399 | 13735 |
YP_007002891.1 | NC_019454_p38 | structural protein | phrog_3112 | virion structural protein | head and packaging | 1 | 22455 | 22778 |
YP_007002889.1 | NC_019454_p36 | DNA-dependent RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 19480 | 21936 |