| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019456 |
Definition |
Lactobacillus phage JCL1032, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
49433 |
Host Name |
Lactobacillus delbrueckii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
44.24 |
Number of singletons |
36 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007003026.1 | NC_019456_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43232 | 43447 |
| YP_007003019.1 | NC_019456_p56 | hypothetical protein | phrog_16790 | unknown function | unknown function | 1 | 41153 | 41296 |
| YP_007003015.1 | NC_019456_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39657 | 39830 |
| YP_007003022.1 | NC_019456_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41908 | 42087 |
| YP_007002993.1 | NC_019456_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27283 | 27633 |
| YP_007003034.1 | NC_019456_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46367 | 46546 |
| YP_007003018.1 | NC_019456_p55 | endodeoxyribonuclease RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 40830 | 41162 |
| YP_007003033.1 | NC_019456_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46164 | 46370 |
| YP_007003005.1 | NC_019456_p42 | hypothetical protein | phrog_7634 | unknown function | unknown function | 1 | 33212 | 33466 |
| YP_007003002.1 | NC_019456_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32646 | 32816 |
| YP_007002970.1 | NC_019456_p7 | ClpP protease | phrog_94 | head maturation protease | head and packaging | 1 | 5325 | 6056 |
| YP_007003030.1 | NC_019456_p67 | hypothetical protein | phrog_2277 | unknown function | unknown function | 1 | 44799 | 44975 |
| YP_007003023.1 | NC_019456_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42205 | 42432 |
| YP_007002998.1 | NC_019456_p35 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 30776 | 31171 |
| YP_007003028.1 | NC_019456_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44150 | 44323 |
| YP_007003001.1 | NC_019456_p38 | antirepresssor I | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 31970 | 32659 |
| YP_007002972.1 | NC_019456_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7248 | 7418 |
| YP_007002966.1 | NC_019456_p3 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1124 | 1621 |
| YP_007003016.1 | NC_019456_p53 | antirepressor II | phrog_373 | anti-repressor | transcription regulation | 1 | 39827 | 40570 |
| YP_007002988.1 | NC_019456_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24827 | 25024 |
| YP_007002978.1 | NC_019456_p15 | hypothetical protein | phrog_26915 | unknown function | unknown function | 1 | 9895 | 10359 |
| YP_007003012.1 | NC_019456_p49 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 38922 | 39260 |
| YP_007003036.1 | NC_019456_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46958 | 47173 |
| YP_007002968.1 | NC_019456_p5 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2018 | 4052 |
| YP_007003035.1 | NC_019456_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46748 | 46879 |
| YP_007002976.1 | NC_019456_p13 | hypothetical protein | phrog_1217 | tail protein | tail | 1 | 8751 | 9140 |
| YP_007002983.1 | NC_019456_p20 | adsorption protein | singleton | unknown function | unknown function | 1 | 21165 | 22589 |
| YP_007002999.1 | NC_019456_p36 | CI-like repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 31164 | 31526 |
| YP_007002967.1 | NC_019456_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1608 | 2006 |
| YP_007003038.1 | NC_019456_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48255 | 48536 |
| YP_007003006.1 | NC_019456_p43 | NTP-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33466 | 34182 |
| YP_007003011.1 | NC_019456_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38628 | 38918 |
| YP_007003014.1 | NC_019456_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39392 | 39691 |
| YP_007002985.1 | NC_019456_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22901 | 23044 |
| YP_007003031.1 | NC_019456_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45039 | 45542 |
| YP_007003013.1 | NC_019456_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39244 | 39399 |
| YP_007002977.1 | NC_019456_p14 | major tail protein | phrog_88 | major tail protein | tail | 1 | 9155 | 9775 |
| YP_007002997.1 | NC_019456_p34 | integrase | phrog_1 | integrase | integration and excision | -1 | 29607 | 30719 |
| YP_007002980.1 | NC_019456_p17 | tape measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 10521 | 16449 |
| YP_007002965.1 | NC_019456_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 884 | 1054 |
| YP_007003027.1 | NC_019456_p64 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 43482 | 43925 |
| YP_007002986.1 | NC_019456_p23 | structural protein | phrog_4440 | tail fiber protein | tail | 1 | 23064 | 24488 |
| YP_007002981.1 | NC_019456_p18 | tail component | phrog_202 | distal tail protein Dit | tail | 1 | 16517 | 18709 |
| YP_007002974.1 | NC_019456_p11 | head-tail adapter | phrog_25 | head closure Hc1 | connector | 1 | 7816 | 8169 |
| YP_007002964.1 | NC_019456_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 557 | 748 |
| YP_007002971.1 | NC_019456_p8 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 6069 | 7241 |
| YP_007003000.1 | NC_019456_p37 | Cro-like repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 31701 | 31907 |
| YP_007003024.1 | NC_019456_p61 | hypothetical protein | phrog_1485 | unknown function | unknown function | 1 | 42447 | 42719 |
| YP_007002987.1 | NC_019456_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24526 | 24837 |
| YP_007002984.1 | NC_019456_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22669 | 22887 |
| YP_007003003.1 | NC_019456_p40 | hypothetical protein | phrog_7989 | unknown function | unknown function | 1 | 32804 | 33004 |
| YP_007003010.1 | NC_019456_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38445 | 38621 |
| YP_007003039.1 | NC_019456_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48549 | 48926 |
| YP_007003021.1 | NC_019456_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41767 | 41886 |
| YP_007002994.1 | NC_019456_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27670 | 27783 |
| YP_007002975.1 | NC_019456_p12 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8153 | 8761 |
| YP_007002979.1 | NC_019456_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10283 | 10507 |
| YP_007003032.1 | NC_019456_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45999 | 46148 |
| YP_007002991.1 | NC_019456_p28 | holin | phrog_2609 | holin | lysis | 1 | 25754 | 26107 |
| YP_007002973.1 | NC_019456_p10 | hypothetical protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 7467 | 7826 |
| YP_007002995.1 | NC_019456_p32 | hypothetical protein | phrog_6160 | unknown function | unknown function | 1 | 27949 | 28860 |
| YP_007003009.1 | NC_019456_p46 | DNA primase | phrog_1829 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 36088 | 38442 |
| YP_007003037.1 | NC_019456_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47355 | 48170 |
| YP_007002996.1 | NC_019456_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28853 | 29239 |
| YP_007002992.1 | NC_019456_p29 | endolysin | phrog_291 | endolysin | lysis | 1 | 26082 | 27281 |
| YP_007003017.1 | NC_019456_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40643 | 40849 |
| YP_007002969.1 | NC_019456_p6 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 4058 | 5365 |
| YP_007003008.1 | NC_019456_p45 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35520 | 36068 |
| YP_007003040.1 | NC_019456_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49111 | 49233 |
| YP_007003020.1 | NC_019456_p57 | hypothetical protein | phrog_248 | transcriptional activator | transcription regulation | 1 | 41293 | 41733 |
| YP_007003007.1 | NC_019456_p44 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 34109 | 35503 |
| YP_007002990.1 | NC_019456_p27 | hypothetical protein | phrog_8369 | hol-like chemotaxis | other | 1 | 25427 | 25750 |
| YP_007002982.1 | NC_019456_p19 | tail component | phrog_4798 | tail protein | tail | 1 | 18724 | 21162 |
| YP_007002989.1 | NC_019456_p26 | hypothetical protein | phrog_4325 | holin | lysis | 1 | 24981 | 25406 |
| YP_007003004.1 | NC_019456_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33101 | 33199 |
| YP_007003025.1 | NC_019456_p62 | hypothetical protein | phrog_11108 | unknown function | unknown function | 1 | 42703 | 43242 |
| YP_007003029.1 | NC_019456_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44511 | 44687 |