Genomic map of Lactobacillus phage JCL1032 (NC_019456)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019456
Definition
Lactobacillus phage JCL1032, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
49433
Host Name
Lactobacillus delbrueckii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
44.24
Number of singletons
36
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007003026.1 NC_019456_p63 hypothetical protein singleton unknown function unknown function 1 43232 43447
YP_007003019.1 NC_019456_p56 hypothetical protein phrog_16790 unknown function unknown function 1 41153 41296
YP_007003015.1 NC_019456_p52 hypothetical protein singleton unknown function unknown function 1 39657 39830
YP_007003022.1 NC_019456_p59 hypothetical protein singleton unknown function unknown function -1 41908 42087
YP_007002993.1 NC_019456_p30 hypothetical protein singleton unknown function unknown function 1 27283 27633
YP_007003034.1 NC_019456_p71 hypothetical protein singleton unknown function unknown function -1 46367 46546
YP_007003018.1 NC_019456_p55 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 40830 41162
YP_007003033.1 NC_019456_p70 hypothetical protein singleton unknown function unknown function 1 46164 46370
YP_007003005.1 NC_019456_p42 hypothetical protein phrog_7634 unknown function unknown function 1 33212 33466
YP_007003002.1 NC_019456_p39 hypothetical protein singleton unknown function unknown function 1 32646 32816
YP_007002970.1 NC_019456_p7 ClpP protease phrog_94 head maturation protease head and packaging 1 5325 6056
YP_007003030.1 NC_019456_p67 hypothetical protein phrog_2277 unknown function unknown function 1 44799 44975
YP_007003023.1 NC_019456_p60 hypothetical protein singleton unknown function unknown function 1 42205 42432
YP_007002998.1 NC_019456_p35 hypothetical protein phrog_87 metallo-protease other -1 30776 31171
YP_007003028.1 NC_019456_p65 hypothetical protein singleton unknown function unknown function 1 44150 44323
YP_007003001.1 NC_019456_p38 antirepresssor I phrog_63 anti-repressor Ant transcription regulation 1 31970 32659
YP_007002972.1 NC_019456_p9 hypothetical protein singleton unknown function unknown function 1 7248 7418
YP_007002966.1 NC_019456_p3 terminase small subunit phrog_83 terminase small subunit head and packaging 1 1124 1621
YP_007003016.1 NC_019456_p53 antirepressor II phrog_373 anti-repressor transcription regulation 1 39827 40570
YP_007002988.1 NC_019456_p25 hypothetical protein singleton unknown function unknown function 1 24827 25024
YP_007002978.1 NC_019456_p15 hypothetical protein phrog_26915 unknown function unknown function 1 9895 10359
YP_007003012.1 NC_019456_p49 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 38922 39260
YP_007003036.1 NC_019456_p73 hypothetical protein singleton unknown function unknown function 1 46958 47173
YP_007002968.1 NC_019456_p5 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2018 4052
YP_007003035.1 NC_019456_p72 hypothetical protein singleton unknown function unknown function 1 46748 46879
YP_007002976.1 NC_019456_p13 hypothetical protein phrog_1217 tail protein tail 1 8751 9140
YP_007002983.1 NC_019456_p20 adsorption protein singleton unknown function unknown function 1 21165 22589
YP_007002999.1 NC_019456_p36 CI-like repressor phrog_8 transcriptional regulator transcription regulation -1 31164 31526
YP_007002967.1 NC_019456_p4 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1608 2006
YP_007003038.1 NC_019456_p75 hypothetical protein singleton unknown function unknown function 1 48255 48536
YP_007003006.1 NC_019456_p43 NTP-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33466 34182
YP_007003011.1 NC_019456_p48 hypothetical protein singleton unknown function unknown function 1 38628 38918
YP_007003014.1 NC_019456_p51 hypothetical protein singleton unknown function unknown function 1 39392 39691
YP_007002985.1 NC_019456_p22 hypothetical protein singleton unknown function unknown function 1 22901 23044
YP_007003031.1 NC_019456_p68 hypothetical protein singleton unknown function unknown function 1 45039 45542
YP_007003013.1 NC_019456_p50 hypothetical protein singleton unknown function unknown function 1 39244 39399
YP_007002977.1 NC_019456_p14 major tail protein phrog_88 major tail protein tail 1 9155 9775
YP_007002997.1 NC_019456_p34 integrase phrog_1 integrase integration and excision -1 29607 30719
YP_007002980.1 NC_019456_p17 tape measure protein phrog_167 tail length tape measure protein tail 1 10521 16449
YP_007002965.1 NC_019456_p2 hypothetical protein singleton unknown function unknown function 1 884 1054
YP_007003027.1 NC_019456_p64 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 43482 43925
YP_007002986.1 NC_019456_p23 structural protein phrog_4440 tail fiber protein tail 1 23064 24488
YP_007002981.1 NC_019456_p18 tail component phrog_202 distal tail protein Dit tail 1 16517 18709
YP_007002974.1 NC_019456_p11 head-tail adapter phrog_25 head closure Hc1 connector 1 7816 8169
YP_007002964.1 NC_019456_p1 hypothetical protein singleton unknown function unknown function 1 557 748
YP_007002971.1 NC_019456_p8 major head protein phrog_10 major head protein head and packaging 1 6069 7241
YP_007003000.1 NC_019456_p37 Cro-like repressor phrog_3 transcriptional repressor transcription regulation 1 31701 31907
YP_007003024.1 NC_019456_p61 hypothetical protein phrog_1485 unknown function unknown function 1 42447 42719
YP_007002987.1 NC_019456_p24 hypothetical protein singleton unknown function unknown function 1 24526 24837
YP_007002984.1 NC_019456_p21 hypothetical protein singleton unknown function unknown function 1 22669 22887
YP_007003003.1 NC_019456_p40 hypothetical protein phrog_7989 unknown function unknown function 1 32804 33004
YP_007003010.1 NC_019456_p47 hypothetical protein singleton unknown function unknown function 1 38445 38621
YP_007003039.1 NC_019456_p76 hypothetical protein singleton unknown function unknown function 1 48549 48926
YP_007003021.1 NC_019456_p58 hypothetical protein singleton unknown function unknown function -1 41767 41886
YP_007002994.1 NC_019456_p31 hypothetical protein singleton unknown function unknown function 1 27670 27783
YP_007002975.1 NC_019456_p12 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 8153 8761
YP_007002979.1 NC_019456_p16 hypothetical protein singleton unknown function unknown function 1 10283 10507
YP_007003032.1 NC_019456_p69 hypothetical protein singleton unknown function unknown function 1 45999 46148
YP_007002991.1 NC_019456_p28 holin phrog_2609 holin lysis 1 25754 26107
YP_007002973.1 NC_019456_p10 hypothetical protein phrog_40 head-tail adaptor Ad1 connector 1 7467 7826
YP_007002995.1 NC_019456_p32 hypothetical protein phrog_6160 unknown function unknown function 1 27949 28860
YP_007003009.1 NC_019456_p46 DNA primase phrog_1829 DNA primase DNA, RNA and nucleotide metabolism 1 36088 38442
YP_007003037.1 NC_019456_p74 hypothetical protein singleton unknown function unknown function 1 47355 48170
YP_007002996.1 NC_019456_p33 hypothetical protein singleton unknown function unknown function 1 28853 29239
YP_007002992.1 NC_019456_p29 endolysin phrog_291 endolysin lysis 1 26082 27281
YP_007003017.1 NC_019456_p54 hypothetical protein singleton unknown function unknown function 1 40643 40849
YP_007002969.1 NC_019456_p6 portal protein phrog_12 portal protein head and packaging 1 4058 5365
YP_007003008.1 NC_019456_p45 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 35520 36068
YP_007003040.1 NC_019456_p77 hypothetical protein singleton unknown function unknown function 1 49111 49233
YP_007003020.1 NC_019456_p57 hypothetical protein phrog_248 transcriptional activator transcription regulation 1 41293 41733
YP_007003007.1 NC_019456_p44 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 34109 35503
YP_007002990.1 NC_019456_p27 hypothetical protein phrog_8369 hol-like chemotaxis other 1 25427 25750
YP_007002982.1 NC_019456_p19 tail component phrog_4798 tail protein tail 1 18724 21162
YP_007002989.1 NC_019456_p26 hypothetical protein phrog_4325 holin lysis 1 24981 25406
YP_007003004.1 NC_019456_p41 hypothetical protein singleton unknown function unknown function 1 33101 33199
YP_007003025.1 NC_019456_p62 hypothetical protein phrog_11108 unknown function unknown function 1 42703 43242
YP_007003029.1 NC_019456_p66 hypothetical protein singleton unknown function unknown function 1 44511 44687