| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019486 |
Definition |
Lactobacillus phage LF1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
42606 |
Host Name |
Lactobacillus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
45 |
Number of singletons |
12 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007003225.1 | NC_019486_p25 | lysin | phrog_291 | endolysin | lysis | 1 | 22565 | 23812 |
| YP_007003213.1 | NC_019486_p13 | hypothetical protein | phrog_6190 | unknown function | unknown function | 1 | 8029 | 8202 |
| YP_007003231.1 | NC_019486_p31 | chromosome partitioning ATPase | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 28069 | 29025 |
| YP_007003247.1 | NC_019486_p47 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36840 | 37274 |
| YP_007003219.1 | NC_019486_p19 | hypothetical protein | phrog_14733 | unknown function | unknown function | 1 | 18569 | 18820 |
| YP_007003238.1 | NC_019486_p38 | phage antirepressor | phrog_1726 | anti-repressor | transcription regulation | 1 | 32878 | 33660 |
| YP_007003205.1 | NC_019486_p5 | phage head maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 3806 | 4291 |
| YP_007003226.1 | NC_019486_p26 | GNAT family acetyltransferase | singleton | unknown function | unknown function | 1 | 24520 | 24981 |
| YP_007003256.1 | NC_019486_p56 | hypothetical protein | phrog_4133 | unknown function | unknown function | -1 | 41135 | 41341 |
| YP_007003218.1 | NC_019486_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18390 | 18566 |
| YP_007003246.1 | NC_019486_p46 | hypothetical protein | phrog_1227 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 35991 | 36839 |
| YP_007003249.1 | NC_019486_p49 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 38047 | 38865 |
| YP_007003210.1 | NC_019486_p10 | head-tail joining protein | phrog_78 | tail terminator | connector | 1 | 6581 | 6994 |
| YP_007003251.1 | NC_019486_p51 | hypothetical protein | phrog_30237 | unknown function | unknown function | 1 | 39026 | 39136 |
| YP_007003212.1 | NC_019486_p12 | hypothetical protein | phrog_5981 | unknown function | unknown function | 1 | 7676 | 8020 |
| YP_007003257.1 | NC_019486_p57 | HNH endonuclease domain protein | phrog_4581 | terminase small subunit | head and packaging | 1 | 41774 | 42559 |
| YP_007003223.1 | NC_019486_p23 | hypothetical protein | phrog_1009 | unknown function | unknown function | 1 | 21741 | 22076 |
| YP_007003237.1 | NC_019486_p37 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 32623 | 32838 |
| YP_007003224.1 | NC_019486_p24 | holin | phrog_2609 | holin | lysis | 1 | 22089 | 22562 |
| YP_007003222.1 | NC_019486_p22 | hypothetical protein | phrog_27088 | unknown function | unknown function | 1 | 21048 | 21722 |
| YP_007003228.1 | NC_019486_p28 | phage integrase | phrog_1 | integrase | integration and excision | -1 | 25759 | 26847 |
| YP_007003252.1 | NC_019486_p52 | endodeoxyribonuclease RusA | singleton | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 39147 | 39464 |
| YP_007003208.1 | NC_019486_p8 | head-tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 5870 | 6217 |
| YP_007003248.1 | NC_019486_p48 | DNA replication protein | phrog_1163 | unknown function | unknown function | 1 | 37289 | 38038 |
| YP_007003227.1 | NC_019486_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25458 | 25556 |
| YP_007003209.1 | NC_019486_p9 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6201 | 6584 |
| YP_007003202.1 | NC_019486_p2 | bacteriophage terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 566 | 2275 |
| YP_007003239.1 | NC_019486_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33673 | 33786 |
| YP_007003221.1 | NC_019486_p21 | hypothetical protein | phrog_6183 | minor tail protein | tail | 1 | 19913 | 21034 |
| YP_007003216.1 | NC_019486_p16 | phage-associated protein/endopeptidase | phrog_326 | tail protein with endopeptidase domain | other | 1 | 13379 | 15460 |
| YP_007003201.1 | NC_019486_p1 | phage terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 114 | 569 |
| YP_007003242.1 | NC_019486_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34440 | 34577 |
| YP_007003217.1 | NC_019486_p17 | tail fiber | phrog_16040 | virion structural protein | head and packaging | 1 | 15485 | 18397 |
| YP_007003243.1 | NC_019486_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34570 | 34740 |
| YP_007003233.1 | NC_019486_p33 | hypothetical protein | phrog_2232 | unknown function | unknown function | -1 | 30272 | 31033 |
| YP_007003244.1 | NC_019486_p44 | hypothetical protein | phrog_31015 | unknown function | unknown function | 1 | 34788 | 34997 |
| YP_007003230.1 | NC_019486_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27654 | 28079 |
| YP_007003234.1 | NC_019486_p34 | beta-galactosidase | singleton | unknown function | unknown function | -1 | 31206 | 31691 |
| YP_007003207.1 | NC_019486_p7 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5575 | 5883 |
| YP_007003214.1 | NC_019486_p14 | phage tail tape measure protein | phrog_1293 | tail length tape measure protein | tail | 1 | 8219 | 12511 |
| YP_007003220.1 | NC_019486_p20 | GDSL family lipase | phrog_17955 | esterase/lipase | other | 1 | 18832 | 19899 |
| YP_007003204.1 | NC_019486_p4 | bacteriophage portal protein | phrog_12 | portal protein | head and packaging | 1 | 2455 | 3720 |
| YP_007003245.1 | NC_019486_p45 | RecT protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 35000 | 35998 |
| YP_007003232.1 | NC_019486_p32 | Zn finger protein | phrog_24502 | zinc-finger domain protein | other | -1 | 29516 | 30028 |
| YP_007003206.1 | NC_019486_p6 | phage capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4309 | 5427 |
| YP_007003203.1 | NC_019486_p3 | hypothetical protein | phrog_29012 | unknown function | unknown function | 1 | 2288 | 2446 |
| YP_007003229.1 | NC_019486_p29 | carboxypeptidase D-like protein | singleton | unknown function | unknown function | -1 | 26960 | 27661 |
| YP_007003236.1 | NC_019486_p36 | xre family toxin-antitoxin system | phrog_8 | transcriptional regulator | transcription regulation | -1 | 32150 | 32473 |
| YP_007003211.1 | NC_019486_p11 | major tail protein | phrog_88 | major tail protein | tail | 1 | 7000 | 7611 |
| YP_007003235.1 | NC_019486_p35 | Lj965 prophage repressor-like protein | phrog_87 | metallo-protease | other | -1 | 31745 | 32146 |
| YP_007003253.1 | NC_019486_p53 | HAD-superfamily hydrolase | singleton | unknown function | unknown function | 1 | 39635 | 40057 |
| YP_007003250.1 | NC_019486_p50 | hypothetical protein | phrog_31679 | unknown function | unknown function | 1 | 38868 | 39026 |
| YP_007003254.1 | NC_019486_p54 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 40047 | 40415 |
| YP_007003215.1 | NC_019486_p15 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 12540 | 13367 |
| YP_007003240.1 | NC_019486_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33773 | 34042 |
| YP_007003255.1 | NC_019486_p55 | phage transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 40463 | 40963 |
| YP_007003241.1 | NC_019486_p41 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 34102 | 34428 |