Genomic map of Lactobacillus phage LF1 (NC_019486)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019486
Definition
Lactobacillus phage LF1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
42606
Host Name
Lactobacillus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
45
Number of singletons
12
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007003225.1 NC_019486_p25 lysin phrog_291 endolysin lysis 1 22565 23812
YP_007003213.1 NC_019486_p13 hypothetical protein phrog_6190 unknown function unknown function 1 8029 8202
YP_007003231.1 NC_019486_p31 chromosome partitioning ATPase phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 28069 29025
YP_007003247.1 NC_019486_p47 single-strand binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 36840 37274
YP_007003219.1 NC_019486_p19 hypothetical protein phrog_14733 unknown function unknown function 1 18569 18820
YP_007003238.1 NC_019486_p38 phage antirepressor phrog_1726 anti-repressor transcription regulation 1 32878 33660
YP_007003205.1 NC_019486_p5 phage head maturation protease phrog_80 head maturation protease head and packaging 1 3806 4291
YP_007003226.1 NC_019486_p26 GNAT family acetyltransferase singleton unknown function unknown function 1 24520 24981
YP_007003256.1 NC_019486_p56 hypothetical protein phrog_4133 unknown function unknown function -1 41135 41341
YP_007003218.1 NC_019486_p18 hypothetical protein singleton unknown function unknown function 1 18390 18566
YP_007003246.1 NC_019486_p46 hypothetical protein phrog_1227 exonuclease DNA, RNA and nucleotide metabolism 1 35991 36839
YP_007003249.1 NC_019486_p49 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 38047 38865
YP_007003210.1 NC_019486_p10 head-tail joining protein phrog_78 tail terminator connector 1 6581 6994
YP_007003251.1 NC_019486_p51 hypothetical protein phrog_30237 unknown function unknown function 1 39026 39136
YP_007003212.1 NC_019486_p12 hypothetical protein phrog_5981 unknown function unknown function 1 7676 8020
YP_007003257.1 NC_019486_p57 HNH endonuclease domain protein phrog_4581 terminase small subunit head and packaging 1 41774 42559
YP_007003223.1 NC_019486_p23 hypothetical protein phrog_1009 unknown function unknown function 1 21741 22076
YP_007003237.1 NC_019486_p37 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 32623 32838
YP_007003224.1 NC_019486_p24 holin phrog_2609 holin lysis 1 22089 22562
YP_007003222.1 NC_019486_p22 hypothetical protein phrog_27088 unknown function unknown function 1 21048 21722
YP_007003228.1 NC_019486_p28 phage integrase phrog_1 integrase integration and excision -1 25759 26847
YP_007003252.1 NC_019486_p52 endodeoxyribonuclease RusA singleton RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 39147 39464
YP_007003208.1 NC_019486_p8 head-tail joining protein phrog_25 head closure Hc1 connector 1 5870 6217
YP_007003248.1 NC_019486_p48 DNA replication protein phrog_1163 unknown function unknown function 1 37289 38038
YP_007003227.1 NC_019486_p27 hypothetical protein singleton unknown function unknown function -1 25458 25556
YP_007003209.1 NC_019486_p9 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 6201 6584
YP_007003202.1 NC_019486_p2 bacteriophage terminase large subunit phrog_9 terminase large subunit head and packaging 1 566 2275
YP_007003239.1 NC_019486_p39 hypothetical protein singleton unknown function unknown function 1 33673 33786
YP_007003221.1 NC_019486_p21 hypothetical protein phrog_6183 minor tail protein tail 1 19913 21034
YP_007003216.1 NC_019486_p16 phage-associated protein/endopeptidase phrog_326 tail protein with endopeptidase domain other 1 13379 15460
YP_007003201.1 NC_019486_p1 phage terminase small subunit phrog_83 terminase small subunit head and packaging 1 114 569
YP_007003242.1 NC_019486_p42 hypothetical protein singleton unknown function unknown function 1 34440 34577
YP_007003217.1 NC_019486_p17 tail fiber phrog_16040 virion structural protein head and packaging 1 15485 18397
YP_007003243.1 NC_019486_p43 hypothetical protein singleton unknown function unknown function 1 34570 34740
YP_007003233.1 NC_019486_p33 hypothetical protein phrog_2232 unknown function unknown function -1 30272 31033
YP_007003244.1 NC_019486_p44 hypothetical protein phrog_31015 unknown function unknown function 1 34788 34997
YP_007003230.1 NC_019486_p30 hypothetical protein singleton unknown function unknown function -1 27654 28079
YP_007003234.1 NC_019486_p34 beta-galactosidase singleton unknown function unknown function -1 31206 31691
YP_007003207.1 NC_019486_p7 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 5575 5883
YP_007003214.1 NC_019486_p14 phage tail tape measure protein phrog_1293 tail length tape measure protein tail 1 8219 12511
YP_007003220.1 NC_019486_p20 GDSL family lipase phrog_17955 esterase/lipase other 1 18832 19899
YP_007003204.1 NC_019486_p4 bacteriophage portal protein phrog_12 portal protein head and packaging 1 2455 3720
YP_007003245.1 NC_019486_p45 RecT protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 35000 35998
YP_007003232.1 NC_019486_p32 Zn finger protein phrog_24502 zinc-finger domain protein other -1 29516 30028
YP_007003206.1 NC_019486_p6 phage capsid protein phrog_10 major head protein head and packaging 1 4309 5427
YP_007003203.1 NC_019486_p3 hypothetical protein phrog_29012 unknown function unknown function 1 2288 2446
YP_007003229.1 NC_019486_p29 carboxypeptidase D-like protein singleton unknown function unknown function -1 26960 27661
YP_007003236.1 NC_019486_p36 xre family toxin-antitoxin system phrog_8 transcriptional regulator transcription regulation -1 32150 32473
YP_007003211.1 NC_019486_p11 major tail protein phrog_88 major tail protein tail 1 7000 7611
YP_007003235.1 NC_019486_p35 Lj965 prophage repressor-like protein phrog_87 metallo-protease other -1 31745 32146
YP_007003253.1 NC_019486_p53 HAD-superfamily hydrolase singleton unknown function unknown function 1 39635 40057
YP_007003250.1 NC_019486_p50 hypothetical protein phrog_31679 unknown function unknown function 1 38868 39026
YP_007003254.1 NC_019486_p54 hypothetical protein phrog_236 nucleotide kinase other 1 40047 40415
YP_007003215.1 NC_019486_p15 hypothetical protein phrog_33 distal tail protein Dit tail 1 12540 13367
YP_007003240.1 NC_019486_p40 hypothetical protein singleton unknown function unknown function -1 33773 34042
YP_007003255.1 NC_019486_p55 phage transcriptional regulator phrog_248 transcriptional activator transcription regulation 1 40463 40963
YP_007003241.1 NC_019486_p41 hypothetical protein phrog_823 unknown function unknown function 1 34102 34428