Genomic map of Lactobacillus phage Sha1 (NC_019489)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019489
Definition
Lactobacillus phage Sha1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41726
Host Name
Lactobacillus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
40.6
Number of singletons
11
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007003582.1 NC_019489_p42 prophage Lp1 protein 5-like protein singleton unknown function unknown function -1 33593 34585
YP_007003557.1 NC_019489_p17 protease subunit of ATP-dependent Clp protease phrog_94 head maturation protease head and packaging 1 8838 9575
YP_007003550.1 NC_019489_p10 phage transcriptional activator RinA phrog_36 transcriptional regulator transcription regulation 1 3298 3729
YP_007003554.1 NC_019489_p14 phage terminase-like protein large subunit phrog_9 terminase large subunit head and packaging 1 5582 7480
YP_007003572.1 NC_019489_p32 prophage Lp2 protein 53-like protein phrog_20633 tail protein tail 1 26452 27336
YP_007003577.1 NC_019489_p37 integral membrane sensor hybrid histidine kinase singleton unknown function unknown function -1 31432 31794
YP_007003595.1 NC_019489_p55 hypothetical protein phrog_2205 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 38610 39143
YP_007003562.1 NC_019489_p22 hypothetical protein phrog_1217 tail protein tail 1 11991 12374
YP_007003578.1 NC_019489_p38 hypothetical protein phrog_15851 unknown function unknown function -1 31962 32276
YP_007003543.1 NC_019489_p3 hypothetical protein singleton unknown function unknown function 1 1468 1572
YP_007003589.1 NC_019489_p49 hypothetical protein singleton unknown function unknown function 1 37401 37484
YP_007003596.1 NC_019489_p56 phage nucleotide-binding protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 39152 39814
YP_007003567.1 NC_019489_p27 minor structural protein gp75-like protein phrog_202 distal tail protein Dit tail 1 19039 20811
YP_007003575.1 NC_019489_p35 hypothetical protein phrog_297 holin lysis 1 28800 29330
YP_007003597.1 NC_019489_p57 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 39816 40475
YP_007003564.1 NC_019489_p24 hypothetical protein phrog_26915 unknown function unknown function 1 13215 13598
YP_007003563.1 NC_019489_p23 major tail protein phrog_88 major tail protein tail 1 12375 13013
YP_007003574.1 NC_019489_p34 phage-related holin phrog_689 holin lysis 1 28524 28787
YP_007003559.1 NC_019489_p19 phage protein DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 10880 11218
YP_007003584.1 NC_019489_p44 Cro family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 35583 35816
YP_007003553.1 NC_019489_p13 P27 family phage terminase small subunit phrog_83 terminase small subunit head and packaging 1 5121 5579
YP_007003576.1 NC_019489_p36 phage integrase phrog_1 integrase integration and excision -1 30182 31318
YP_007003580.1 NC_019489_p40 hypothetical protein singleton unknown function unknown function -1 32835 33023
YP_007003591.1 NC_019489_p51 hypothetical protein phrog_31835 unknown function unknown function 1 37710 37976
YP_007003587.1 NC_019489_p47 RNA polymerase III phrog_2211 unknown function unknown function -1 36658 36984
YP_007003586.1 NC_019489_p46 hypothetical protein phrog_3882 unknown function unknown function 1 36555 36686
YP_007003552.1 NC_019489_p12 restriction endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4433 4903
YP_007003592.1 NC_019489_p52 hypothetical protein phrog_38622 unknown function unknown function 1 37979 38179
YP_007003569.1 NC_019489_p29 tail fiber phrog_7660 tail fiber protein tail 1 23267 26056
YP_007003545.1 NC_019489_p5 hypothetical protein singleton unknown function unknown function 1 2245 2361
YP_007003551.1 NC_019489_p11 HNH nuclease phrog_25061 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4252 4422
YP_007003541.1 NC_019489_p1 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 246 1031
YP_007003560.1 NC_019489_p20 phage head-tail adaptor phrog_25 head closure Hc1 connector 1 11202 11564
YP_007003565.1 NC_019489_p25 hypothetical protein phrog_2629 unknown function unknown function 1 13595 13786
YP_007003547.1 NC_019489_p7 hypothetical protein phrog_38577 unknown function unknown function 1 2568 2744
YP_007003598.1 NC_019489_p58 hypothetical protein phrog_398 unknown function unknown function 1 40522 41214
YP_007003568.1 NC_019489_p28 minor structural protein gp89-like protein phrog_4798 tail protein tail 1 20881 23250
YP_007003548.1 NC_019489_p8 hypothetical protein phrog_419 unknown function unknown function 1 2728 3150
YP_007003546.1 NC_019489_p6 G-protein coupled receptor singleton unknown function unknown function 1 2371 2565
YP_007003558.1 NC_019489_p18 HK97 family phage major capsid protein phrog_10 major head protein head and packaging 1 9575 10801
YP_007003561.1 NC_019489_p21 phage head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 11554 11994
YP_007003579.1 NC_019489_p39 hypothetical protein singleton unknown function unknown function -1 32269 32682
YP_007003581.1 NC_019489_p41 hypothetical protein phrog_31294 unknown function unknown function -1 33339 33539
YP_007003566.1 NC_019489_p26 minor tail protein phrog_167 tail length tape measure protein tail 1 13799 18967
YP_007003544.1 NC_019489_p4 hypothetical protein phrog_25323 unknown function unknown function 1 1575 2180
YP_007003556.1 NC_019489_p16 phage portal protein phrog_12 portal protein head and packaging 1 7667 8860
YP_007003593.1 NC_019489_p53 hypothetical protein singleton unknown function unknown function 1 38191 38415
YP_007003594.1 NC_019489_p54 hypothetical protein singleton unknown function unknown function 1 38464 38610
YP_007003549.1 NC_019489_p9 LP1-like protein singleton unknown function unknown function 1 3147 3317
YP_007003542.1 NC_019489_p2 hypothetical protein phrog_25897 unknown function unknown function 1 1167 1475
YP_007003571.1 NC_019489_p31 hypothetical protein phrog_12210 unknown function unknown function 1 26307 26468
YP_007003588.1 NC_019489_p48 hypothetical protein phrog_823 unknown function unknown function 1 37078 37407
YP_007003585.1 NC_019489_p45 phage-related antirepressor phrog_63 anti-repressor Ant transcription regulation 1 35832 36542
YP_007003555.1 NC_019489_p15 phage head-tail joining protein phrog_1142 unknown function unknown function 1 7470 7664
YP_007003583.1 NC_019489_p43 bifunctional S24 family peptidase/transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 34710 35414
YP_007003570.1 NC_019489_p30 hypothetical protein phrog_11075 unknown function unknown function 1 26049 26303
YP_007003590.1 NC_019489_p50 prophage Lp3 protein 4-like protein phrog_66 excisionase and transcriptional regulator integration and excision 1 37497 37676
YP_007003573.1 NC_019489_p33 endolysin phrog_291 endolysin lysis 1 27352 28524