| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019489 |
Definition |
Lactobacillus phage Sha1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41726 |
Host Name |
Lactobacillus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
40.6 |
Number of singletons |
11 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007003582.1 | NC_019489_p42 | prophage Lp1 protein 5-like protein | singleton | unknown function | unknown function | -1 | 33593 | 34585 |
| YP_007003557.1 | NC_019489_p17 | protease subunit of ATP-dependent Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 8838 | 9575 |
| YP_007003550.1 | NC_019489_p10 | phage transcriptional activator RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 3298 | 3729 |
| YP_007003554.1 | NC_019489_p14 | phage terminase-like protein large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 5582 | 7480 |
| YP_007003572.1 | NC_019489_p32 | prophage Lp2 protein 53-like protein | phrog_20633 | tail protein | tail | 1 | 26452 | 27336 |
| YP_007003577.1 | NC_019489_p37 | integral membrane sensor hybrid histidine kinase | singleton | unknown function | unknown function | -1 | 31432 | 31794 |
| YP_007003595.1 | NC_019489_p55 | hypothetical protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 38610 | 39143 |
| YP_007003562.1 | NC_019489_p22 | hypothetical protein | phrog_1217 | tail protein | tail | 1 | 11991 | 12374 |
| YP_007003578.1 | NC_019489_p38 | hypothetical protein | phrog_15851 | unknown function | unknown function | -1 | 31962 | 32276 |
| YP_007003543.1 | NC_019489_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1468 | 1572 |
| YP_007003589.1 | NC_019489_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37401 | 37484 |
| YP_007003596.1 | NC_019489_p56 | phage nucleotide-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39152 | 39814 |
| YP_007003567.1 | NC_019489_p27 | minor structural protein gp75-like protein | phrog_202 | distal tail protein Dit | tail | 1 | 19039 | 20811 |
| YP_007003575.1 | NC_019489_p35 | hypothetical protein | phrog_297 | holin | lysis | 1 | 28800 | 29330 |
| YP_007003597.1 | NC_019489_p57 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39816 | 40475 |
| YP_007003564.1 | NC_019489_p24 | hypothetical protein | phrog_26915 | unknown function | unknown function | 1 | 13215 | 13598 |
| YP_007003563.1 | NC_019489_p23 | major tail protein | phrog_88 | major tail protein | tail | 1 | 12375 | 13013 |
| YP_007003574.1 | NC_019489_p34 | phage-related holin | phrog_689 | holin | lysis | 1 | 28524 | 28787 |
| YP_007003559.1 | NC_019489_p19 | phage protein DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 10880 | 11218 |
| YP_007003584.1 | NC_019489_p44 | Cro family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 35583 | 35816 |
| YP_007003553.1 | NC_019489_p13 | P27 family phage terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 5121 | 5579 |
| YP_007003576.1 | NC_019489_p36 | phage integrase | phrog_1 | integrase | integration and excision | -1 | 30182 | 31318 |
| YP_007003580.1 | NC_019489_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32835 | 33023 |
| YP_007003591.1 | NC_019489_p51 | hypothetical protein | phrog_31835 | unknown function | unknown function | 1 | 37710 | 37976 |
| YP_007003587.1 | NC_019489_p47 | RNA polymerase III | phrog_2211 | unknown function | unknown function | -1 | 36658 | 36984 |
| YP_007003586.1 | NC_019489_p46 | hypothetical protein | phrog_3882 | unknown function | unknown function | 1 | 36555 | 36686 |
| YP_007003552.1 | NC_019489_p12 | restriction endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4433 | 4903 |
| YP_007003592.1 | NC_019489_p52 | hypothetical protein | phrog_38622 | unknown function | unknown function | 1 | 37979 | 38179 |
| YP_007003569.1 | NC_019489_p29 | tail fiber | phrog_7660 | tail fiber protein | tail | 1 | 23267 | 26056 |
| YP_007003545.1 | NC_019489_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2245 | 2361 |
| YP_007003551.1 | NC_019489_p11 | HNH nuclease | phrog_25061 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4252 | 4422 |
| YP_007003541.1 | NC_019489_p1 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 246 | 1031 |
| YP_007003560.1 | NC_019489_p20 | phage head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 11202 | 11564 |
| YP_007003565.1 | NC_019489_p25 | hypothetical protein | phrog_2629 | unknown function | unknown function | 1 | 13595 | 13786 |
| YP_007003547.1 | NC_019489_p7 | hypothetical protein | phrog_38577 | unknown function | unknown function | 1 | 2568 | 2744 |
| YP_007003598.1 | NC_019489_p58 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 40522 | 41214 |
| YP_007003568.1 | NC_019489_p28 | minor structural protein gp89-like protein | phrog_4798 | tail protein | tail | 1 | 20881 | 23250 |
| YP_007003548.1 | NC_019489_p8 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 2728 | 3150 |
| YP_007003546.1 | NC_019489_p6 | G-protein coupled receptor | singleton | unknown function | unknown function | 1 | 2371 | 2565 |
| YP_007003558.1 | NC_019489_p18 | HK97 family phage major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 9575 | 10801 |
| YP_007003561.1 | NC_019489_p21 | phage head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 11554 | 11994 |
| YP_007003579.1 | NC_019489_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32269 | 32682 |
| YP_007003581.1 | NC_019489_p41 | hypothetical protein | phrog_31294 | unknown function | unknown function | -1 | 33339 | 33539 |
| YP_007003566.1 | NC_019489_p26 | minor tail protein | phrog_167 | tail length tape measure protein | tail | 1 | 13799 | 18967 |
| YP_007003544.1 | NC_019489_p4 | hypothetical protein | phrog_25323 | unknown function | unknown function | 1 | 1575 | 2180 |
| YP_007003556.1 | NC_019489_p16 | phage portal protein | phrog_12 | portal protein | head and packaging | 1 | 7667 | 8860 |
| YP_007003593.1 | NC_019489_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38191 | 38415 |
| YP_007003594.1 | NC_019489_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38464 | 38610 |
| YP_007003549.1 | NC_019489_p9 | LP1-like protein | singleton | unknown function | unknown function | 1 | 3147 | 3317 |
| YP_007003542.1 | NC_019489_p2 | hypothetical protein | phrog_25897 | unknown function | unknown function | 1 | 1167 | 1475 |
| YP_007003571.1 | NC_019489_p31 | hypothetical protein | phrog_12210 | unknown function | unknown function | 1 | 26307 | 26468 |
| YP_007003588.1 | NC_019489_p48 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 37078 | 37407 |
| YP_007003585.1 | NC_019489_p45 | phage-related antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 35832 | 36542 |
| YP_007003555.1 | NC_019489_p15 | phage head-tail joining protein | phrog_1142 | unknown function | unknown function | 1 | 7470 | 7664 |
| YP_007003583.1 | NC_019489_p43 | bifunctional S24 family peptidase/transcriptional regulator | phrog_4 | transcriptional repressor | transcription regulation | -1 | 34710 | 35414 |
| YP_007003570.1 | NC_019489_p30 | hypothetical protein | phrog_11075 | unknown function | unknown function | 1 | 26049 | 26303 |
| YP_007003590.1 | NC_019489_p50 | prophage Lp3 protein 4-like protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 37497 | 37676 |
| YP_007003573.1 | NC_019489_p33 | endolysin | phrog_291 | endolysin | lysis | 1 | 27352 | 28524 |