| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019490 |
Definition |
Riemerella phage RAP44, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
49329 |
Host Name |
Riemerella anatipestifer |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
34.74 |
Number of singletons |
24 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007003601.1 | NC_019490_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1209 | 1787 |
| YP_007003673.1 | NC_019490_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44944 | 45213 |
| YP_007003634.1 | NC_019490_p36 | hypothetical protein | phrog_309 | terminase small subunit | head and packaging | -1 | 25923 | 26405 |
| YP_007003609.1 | NC_019490_p11 | DNA-binding protein | phrog_1373 | transcriptional regulator | transcription regulation | 1 | 8120 | 8482 |
| YP_007003621.1 | NC_019490_p23 | hypothetical protein | phrog_7935 | unknown function | unknown function | -1 | 17549 | 17872 |
| YP_007003604.1 | NC_019490_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2611 | 2934 |
| YP_007003676.1 | NC_019490_p78 | hypothetical protein | phrog_18499 | unknown function | unknown function | -1 | 46803 | 47144 |
| YP_007003653.1 | NC_019490_p55 | hypothetical protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 35561 | 36328 |
| YP_007003669.1 | NC_019490_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42587 | 42766 |
| YP_007003619.1 | NC_019490_p21 | hypothetical protein | phrog_5377 | unknown function | unknown function | -1 | 16798 | 17241 |
| YP_007003657.1 | NC_019490_p59 | phage replication protein | phrog_6451 | primosomal protein | DNA, RNA and nucleotide metabolism | -1 | 37592 | 38491 |
| YP_007003651.1 | NC_019490_p53 | hypothetical protein | phrog_28377 | unknown function | unknown function | -1 | 35022 | 35339 |
| YP_007003605.1 | NC_019490_p7 | hypothetical protein | phrog_19846 | unknown function | unknown function | -1 | 2961 | 6368 |
| YP_007003629.1 | NC_019490_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21424 | 21747 |
| YP_007003647.1 | NC_019490_p49 | hypothetical protein | phrog_37256 | unknown function | unknown function | -1 | 33056 | 33235 |
| YP_007003612.1 | NC_019490_p14 | Ig domain-containing protein | phrog_215 | structural protein with Ig domain | head and packaging | 1 | 12853 | 13545 |
| YP_007003618.1 | NC_019490_p20 | hypothetical protein | phrog_5597 | unknown function | unknown function | -1 | 16391 | 16801 |
| YP_007003625.1 | NC_019490_p27 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 20140 | 20406 |
| YP_007003644.1 | NC_019490_p46 | hypothetical protein | phrog_34089 | unknown function | unknown function | -1 | 32163 | 32435 |
| YP_007003674.1 | NC_019490_p76 | DNA breaking-rejoining enzyme | phrog_1 | integrase | integration and excision | 1 | 45338 | 46582 |
| YP_007003649.1 | NC_019490_p51 | hypothetical protein | phrog_36085 | unknown function | unknown function | -1 | 34377 | 34622 |
| YP_007003626.1 | NC_019490_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20549 | 20650 |
| YP_007003668.1 | NC_019490_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42381 | 42590 |
| YP_007003614.1 | NC_019490_p16 | phage antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 14217 | 14942 |
| YP_007003638.1 | NC_019490_p40 | bacteriophage lambda NinG protein | phrog_5034 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28427 | 28855 |
| YP_007003633.1 | NC_019490_p35 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 24530 | 25828 |
| YP_007003654.1 | NC_019490_p56 | S-adenosyl-L-methionine-dependent methyltransferase | phrog_31814 | DNA methyltransferase | other | -1 | 36399 | 36686 |
| YP_007003617.1 | NC_019490_p19 | hypothetical protein | phrog_6767 | unknown function | unknown function | -1 | 15857 | 16363 |
| YP_007003627.1 | NC_019490_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20935 | 21084 |
| YP_007003664.1 | NC_019490_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41419 | 41631 |
| YP_007003670.1 | NC_019490_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42943 | 43452 |
| YP_007003639.1 | NC_019490_p41 | hypothetical protein | phrog_1086 | unknown function | unknown function | -1 | 28958 | 29272 |
| YP_007003599.1 | NC_019490_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43 | 390 |
| YP_007003667.1 | NC_019490_p69 | hypothetical protein | phrog_36821 | unknown function | unknown function | -1 | 42011 | 42325 |
| YP_007003665.1 | NC_019490_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41729 | 41839 |
| YP_007003641.1 | NC_019490_p43 | hypothetical protein | phrog_29185 | unknown function | unknown function | -1 | 30087 | 30407 |
| YP_007003643.1 | NC_019490_p45 | hypothetical protein | phrog_25409 | unknown function | unknown function | -1 | 31744 | 32073 |
| YP_007003636.1 | NC_019490_p38 | adenine nucleotide alpha hydrolase-like protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 27095 | 27799 |
| YP_007003666.1 | NC_019490_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41911 | 42033 |
| YP_007003655.1 | NC_019490_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36691 | 36837 |
| YP_007003656.1 | NC_019490_p58 | hypothetical protein | phrog_31942 | unknown function | unknown function | -1 | 36907 | 37614 |
| YP_007003607.1 | NC_019490_p9 | hypothetical protein | phrog_10156 | unknown function | unknown function | -1 | 7342 | 7773 |
| YP_007003603.1 | NC_019490_p5 | hypothetical protein | phrog_15610 | protease | other | -1 | 2295 | 2627 |
| YP_007003611.1 | NC_019490_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12732 | 12800 |
| YP_007003648.1 | NC_019490_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33604 | 34353 |
| YP_007003602.1 | NC_019490_p4 | hypothetical protein | phrog_14914 | holin | lysis | -1 | 1777 | 2298 |
| YP_007003672.1 | NC_019490_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44495 | 44947 |
| YP_007003622.1 | NC_019490_p24 | head protein | phrog_29 | major head protein | head and packaging | -1 | 17872 | 18954 |
| YP_007003615.1 | NC_019490_p17 | hypothetical protein | phrog_11996 | unknown function | unknown function | -1 | 15113 | 15298 |
| YP_007003613.1 | NC_019490_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13884 | 14213 |
| YP_007003635.1 | NC_019490_p37 | ParB-like nuclease | phrog_9353 | unknown function | unknown function | -1 | 26395 | 27132 |
| YP_007003624.1 | NC_019490_p26 | hypothetical protein | phrog_5824 | unknown function | unknown function | -1 | 19363 | 20007 |
| YP_007003640.1 | NC_019490_p42 | phage antirepressor protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 29335 | 30084 |
| YP_007003661.1 | NC_019490_p63 | hypothetical protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | -1 | 39431 | 39877 |
| YP_007003630.1 | NC_019490_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21777 | 21998 |
| YP_007003677.1 | NC_019490_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47466 | 48077 |
| YP_007003650.1 | NC_019490_p52 | DNA-binding protein | phrog_715 | MazG-like pyrophosphatase | other | -1 | 34619 | 34915 |
| YP_007003671.1 | NC_019490_p73 | hypothetical protein | phrog_4 | transcriptional repressor | transcription regulation | 1 | 43722 | 44480 |
| YP_007003658.1 | NC_019490_p60 | hypothetical protein | phrog_30131 | unknown function | unknown function | -1 | 38640 | 38819 |
| YP_007003646.1 | NC_019490_p48 | hypothetical protein | phrog_31163 | unknown function | unknown function | -1 | 32690 | 33055 |
| YP_007003631.1 | NC_019490_p33 | phage head morphogenesis protein | phrog_115 | minor head protein | head and packaging | -1 | 22003 | 23058 |
| YP_007003632.1 | NC_019490_p34 | phage portal protein | phrog_64 | portal protein | head and packaging | -1 | 23058 | 24368 |
| YP_007003628.1 | NC_019490_p30 | hypothetical protein | phrog_32215 | unknown function | unknown function | 1 | 21066 | 21269 |
| YP_007003660.1 | NC_019490_p62 | HNH endonuclease | singleton | unknown function | unknown function | -1 | 39156 | 39431 |
| YP_007003608.1 | NC_019490_p10 | DUF2136 superfamily protein | phrog_5734 | unknown function | unknown function | 1 | 7830 | 8123 |
| YP_007003675.1 | NC_019490_p77 | DNA-binding protein | singleton | transcriptional repressor | transcription regulation | -1 | 46621 | 46803 |
| YP_007003663.1 | NC_019490_p65 | hypothetical protein | phrog_33004 | unknown function | unknown function | -1 | 40593 | 41000 |
| YP_007003600.1 | NC_019490_p2 | N-acetylmuramoyl-L-alanine | phrog_435 | endolysin | lysis | -1 | 632 | 1186 |
| YP_007003637.1 | NC_019490_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27972 | 28430 |
| YP_007003645.1 | NC_019490_p47 | hypothetical protein | phrog_24568 | unknown function | unknown function | -1 | 32432 | 32683 |
| YP_007003678.1 | NC_019490_p80 | lambda repressor-like DNA-binding domain protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 48443 | 48721 |
| YP_007003620.1 | NC_019490_p22 | hypothetical protein | phrog_13251 | unknown function | unknown function | -1 | 17232 | 17555 |
| YP_007003659.1 | NC_019490_p61 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 38824 | 39180 |
| YP_007003652.1 | NC_019490_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35318 | 35548 |
| YP_007003623.1 | NC_019490_p25 | hypothetical protein | phrog_909 | major head protein | head and packaging | -1 | 18976 | 19347 |
| YP_007003642.1 | NC_019490_p44 | DNA-damage-inducible protein D | phrog_8036 | unknown function | unknown function | -1 | 30680 | 31504 |
| YP_007003610.1 | NC_019490_p12 | tape measure domain protein | phrog_9959 | tail length tape measure protein | tail | -1 | 8485 | 12666 |
| YP_007003662.1 | NC_019490_p64 | phage exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 39874 | 40593 |
| YP_007003606.1 | NC_019490_p8 | phage tail protein | phrog_6305 | tail protein | tail | -1 | 6356 | 7345 |
| YP_007003616.1 | NC_019490_p18 | hypothetical protein | phrog_12247 | unknown function | unknown function | -1 | 15316 | 15777 |