Genomic map of Riemerella phage RAP44 (NC_019490)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019490
Definition
Riemerella phage RAP44, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
49329
Host Name
Riemerella anatipestifer
Host domain
Bacteria
Is prophage?
undef
Number of proteins
80
%GC
34.74
Number of singletons
24
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007003601.1 NC_019490_p3 hypothetical protein singleton unknown function unknown function -1 1209 1787
YP_007003673.1 NC_019490_p75 hypothetical protein singleton unknown function unknown function 1 44944 45213
YP_007003634.1 NC_019490_p36 hypothetical protein phrog_309 terminase small subunit head and packaging -1 25923 26405
YP_007003609.1 NC_019490_p11 DNA-binding protein phrog_1373 transcriptional regulator transcription regulation 1 8120 8482
YP_007003621.1 NC_019490_p23 hypothetical protein phrog_7935 unknown function unknown function -1 17549 17872
YP_007003604.1 NC_019490_p6 hypothetical protein singleton unknown function unknown function -1 2611 2934
YP_007003676.1 NC_019490_p78 hypothetical protein phrog_18499 unknown function unknown function -1 46803 47144
YP_007003653.1 NC_019490_p55 hypothetical protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover -1 35561 36328
YP_007003669.1 NC_019490_p71 hypothetical protein singleton unknown function unknown function -1 42587 42766
YP_007003619.1 NC_019490_p21 hypothetical protein phrog_5377 unknown function unknown function -1 16798 17241
YP_007003657.1 NC_019490_p59 phage replication protein phrog_6451 primosomal protein DNA, RNA and nucleotide metabolism -1 37592 38491
YP_007003651.1 NC_019490_p53 hypothetical protein phrog_28377 unknown function unknown function -1 35022 35339
YP_007003605.1 NC_019490_p7 hypothetical protein phrog_19846 unknown function unknown function -1 2961 6368
YP_007003629.1 NC_019490_p31 hypothetical protein singleton unknown function unknown function -1 21424 21747
YP_007003647.1 NC_019490_p49 hypothetical protein phrog_37256 unknown function unknown function -1 33056 33235
YP_007003612.1 NC_019490_p14 Ig domain-containing protein phrog_215 structural protein with Ig domain head and packaging 1 12853 13545
YP_007003618.1 NC_019490_p20 hypothetical protein phrog_5597 unknown function unknown function -1 16391 16801
YP_007003625.1 NC_019490_p27 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 20140 20406
YP_007003644.1 NC_019490_p46 hypothetical protein phrog_34089 unknown function unknown function -1 32163 32435
YP_007003674.1 NC_019490_p76 DNA breaking-rejoining enzyme phrog_1 integrase integration and excision 1 45338 46582
YP_007003649.1 NC_019490_p51 hypothetical protein phrog_36085 unknown function unknown function -1 34377 34622
YP_007003626.1 NC_019490_p28 hypothetical protein singleton unknown function unknown function 1 20549 20650
YP_007003668.1 NC_019490_p70 hypothetical protein singleton unknown function unknown function -1 42381 42590
YP_007003614.1 NC_019490_p16 phage antirepressor protein phrog_63 anti-repressor Ant transcription regulation 1 14217 14942
YP_007003638.1 NC_019490_p40 bacteriophage lambda NinG protein phrog_5034 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism -1 28427 28855
YP_007003633.1 NC_019490_p35 phage terminase large subunit phrog_2 terminase large subunit head and packaging -1 24530 25828
YP_007003654.1 NC_019490_p56 S-adenosyl-L-methionine-dependent methyltransferase phrog_31814 DNA methyltransferase other -1 36399 36686
YP_007003617.1 NC_019490_p19 hypothetical protein phrog_6767 unknown function unknown function -1 15857 16363
YP_007003627.1 NC_019490_p29 hypothetical protein singleton unknown function unknown function 1 20935 21084
YP_007003664.1 NC_019490_p66 hypothetical protein singleton unknown function unknown function -1 41419 41631
YP_007003670.1 NC_019490_p72 hypothetical protein singleton unknown function unknown function 1 42943 43452
YP_007003639.1 NC_019490_p41 hypothetical protein phrog_1086 unknown function unknown function -1 28958 29272
YP_007003599.1 NC_019490_p1 hypothetical protein singleton unknown function unknown function 1 43 390
YP_007003667.1 NC_019490_p69 hypothetical protein phrog_36821 unknown function unknown function -1 42011 42325
YP_007003665.1 NC_019490_p67 hypothetical protein singleton unknown function unknown function -1 41729 41839
YP_007003641.1 NC_019490_p43 hypothetical protein phrog_29185 unknown function unknown function -1 30087 30407
YP_007003643.1 NC_019490_p45 hypothetical protein phrog_25409 unknown function unknown function -1 31744 32073
YP_007003636.1 NC_019490_p38 adenine nucleotide alpha hydrolase-like protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover -1 27095 27799
YP_007003666.1 NC_019490_p68 hypothetical protein singleton unknown function unknown function -1 41911 42033
YP_007003655.1 NC_019490_p57 hypothetical protein singleton unknown function unknown function -1 36691 36837
YP_007003656.1 NC_019490_p58 hypothetical protein phrog_31942 unknown function unknown function -1 36907 37614
YP_007003607.1 NC_019490_p9 hypothetical protein phrog_10156 unknown function unknown function -1 7342 7773
YP_007003603.1 NC_019490_p5 hypothetical protein phrog_15610 protease other -1 2295 2627
YP_007003611.1 NC_019490_p13 hypothetical protein singleton unknown function unknown function 1 12732 12800
YP_007003648.1 NC_019490_p50 hypothetical protein singleton unknown function unknown function -1 33604 34353
YP_007003602.1 NC_019490_p4 hypothetical protein phrog_14914 holin lysis -1 1777 2298
YP_007003672.1 NC_019490_p74 hypothetical protein singleton unknown function unknown function 1 44495 44947
YP_007003622.1 NC_019490_p24 head protein phrog_29 major head protein head and packaging -1 17872 18954
YP_007003615.1 NC_019490_p17 hypothetical protein phrog_11996 unknown function unknown function -1 15113 15298
YP_007003613.1 NC_019490_p15 hypothetical protein singleton unknown function unknown function 1 13884 14213
YP_007003635.1 NC_019490_p37 ParB-like nuclease phrog_9353 unknown function unknown function -1 26395 27132
YP_007003624.1 NC_019490_p26 hypothetical protein phrog_5824 unknown function unknown function -1 19363 20007
YP_007003640.1 NC_019490_p42 phage antirepressor protein phrog_63 anti-repressor Ant transcription regulation -1 29335 30084
YP_007003661.1 NC_019490_p63 hypothetical protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism -1 39431 39877
YP_007003630.1 NC_019490_p32 hypothetical protein singleton unknown function unknown function -1 21777 21998
YP_007003677.1 NC_019490_p79 hypothetical protein singleton unknown function unknown function -1 47466 48077
YP_007003650.1 NC_019490_p52 DNA-binding protein phrog_715 MazG-like pyrophosphatase other -1 34619 34915
YP_007003671.1 NC_019490_p73 hypothetical protein phrog_4 transcriptional repressor transcription regulation 1 43722 44480
YP_007003658.1 NC_019490_p60 hypothetical protein phrog_30131 unknown function unknown function -1 38640 38819
YP_007003646.1 NC_019490_p48 hypothetical protein phrog_31163 unknown function unknown function -1 32690 33055
YP_007003631.1 NC_019490_p33 phage head morphogenesis protein phrog_115 minor head protein head and packaging -1 22003 23058
YP_007003632.1 NC_019490_p34 phage portal protein phrog_64 portal protein head and packaging -1 23058 24368
YP_007003628.1 NC_019490_p30 hypothetical protein phrog_32215 unknown function unknown function 1 21066 21269
YP_007003660.1 NC_019490_p62 HNH endonuclease singleton unknown function unknown function -1 39156 39431
YP_007003608.1 NC_019490_p10 DUF2136 superfamily protein phrog_5734 unknown function unknown function 1 7830 8123
YP_007003675.1 NC_019490_p77 DNA-binding protein singleton transcriptional repressor transcription regulation -1 46621 46803
YP_007003663.1 NC_019490_p65 hypothetical protein phrog_33004 unknown function unknown function -1 40593 41000
YP_007003600.1 NC_019490_p2 N-acetylmuramoyl-L-alanine phrog_435 endolysin lysis -1 632 1186
YP_007003637.1 NC_019490_p39 hypothetical protein singleton unknown function unknown function -1 27972 28430
YP_007003645.1 NC_019490_p47 hypothetical protein phrog_24568 unknown function unknown function -1 32432 32683
YP_007003678.1 NC_019490_p80 lambda repressor-like DNA-binding domain protein phrog_3 transcriptional repressor transcription regulation 1 48443 48721
YP_007003620.1 NC_019490_p22 hypothetical protein phrog_13251 unknown function unknown function -1 17232 17555
YP_007003659.1 NC_019490_p61 single-strand binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 38824 39180
YP_007003652.1 NC_019490_p54 hypothetical protein singleton unknown function unknown function -1 35318 35548
YP_007003623.1 NC_019490_p25 hypothetical protein phrog_909 major head protein head and packaging -1 18976 19347
YP_007003642.1 NC_019490_p44 DNA-damage-inducible protein D phrog_8036 unknown function unknown function -1 30680 31504
YP_007003610.1 NC_019490_p12 tape measure domain protein phrog_9959 tail length tape measure protein tail -1 8485 12666
YP_007003662.1 NC_019490_p64 phage exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 39874 40593
YP_007003606.1 NC_019490_p8 phage tail protein phrog_6305 tail protein tail -1 6356 7345
YP_007003616.1 NC_019490_p18 hypothetical protein phrog_12247 unknown function unknown function -1 15316 15777