| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019506 |
Definition |
Clostridium phage phiCP13O, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
38329 |
Host Name |
Clostridium perfringens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
30.36 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007005063.1 | NC_019506_p48 | hypothetical protein | phrog_16715 | unknown function | unknown function | 1 | 33945 | 34112 |
| YP_007005039.1 | NC_019506_p24 | phage-related minor tail protein | phrog_15478 | tail length tape measure protein | tail | 1 | 17165 | 18586 |
| YP_007005019.1 | NC_019506_p4 | phage portal protein SPP1 | phrog_64 | portal protein | head and packaging | 1 | 1892 | 3247 |
| YP_007005061.1 | NC_019506_p46 | ERF superfamily protein | singleton | unknown function | unknown function | 1 | 33063 | 33383 |
| YP_007005046.1 | NC_019506_p31 | phage anti-repressor protein | phrog_14211 | anti-repressor | transcription regulation | 1 | 26720 | 27424 |
| YP_007005051.1 | NC_019506_p36 | hypothetical protein | phrog_3458 | unknown function | unknown function | 1 | 28348 | 28554 |
| YP_007005044.1 | NC_019506_p29 | small integral membrane protein | phrog_297 | holin | lysis | 1 | 25479 | 25706 |
| YP_007005066.1 | NC_019506_p51 | CHC2 zinc finger protein | phrog_18098 | unknown function | unknown function | 1 | 35682 | 36647 |
| YP_007005026.1 | NC_019506_p11 | predicted P-loop ATPase | phrog_1313 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 6753 | 8012 |
| YP_007005038.1 | NC_019506_p23 | phage-related minor tail protein | phrog_9696 | tail length tape measure protein | tail | 1 | 15420 | 16097 |
| YP_007005018.1 | NC_019506_p3 | protein of unknown function DUF3310 | phrog_236 | nucleotide kinase | other | 1 | 1687 | 1890 |
| YP_007005062.1 | NC_019506_p47 | hypothetical protein | phrog_3490 | ERCC4-type nuclease | DNA, RNA and nucleotide metabolism | 1 | 33383 | 33952 |
| YP_007005054.1 | NC_019506_p39 | hypothetical protein | phrog_18552 | unknown function | unknown function | 1 | 29488 | 29739 |
| YP_007005032.1 | NC_019506_p17 | hypothetical protein | phrog_1236 | head protein | head and packaging | 1 | 12942 | 13412 |
| YP_007005068.1 | NC_019506_p53 | hypothetical protein | phrog_18244 | unknown function | unknown function | 1 | 37429 | 37644 |
| YP_007005024.1 | NC_019506_p9 | hypothetical protein | phrog_16552 | unknown function | unknown function | -1 | 6361 | 6486 |
| YP_007005059.1 | NC_019506_p44 | hypothetical protein | phrog_18368 | unknown function | unknown function | 1 | 32023 | 32244 |
| YP_007005042.1 | NC_019506_p27 | predicted hydrolase | phrog_7043 | tail protein | tail | 1 | 21856 | 22920 |
| YP_007005045.1 | NC_019506_p30 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 25707 | 25967 |
| YP_007005028.1 | NC_019506_p13 | P22 coat protein | phrog_267 | major head protein | head and packaging | 1 | 9261 | 10091 |
| YP_007005060.1 | NC_019506_p45 | ERF superfamily protein | singleton | unknown function | unknown function | 1 | 32794 | 33045 |
| YP_007005065.1 | NC_019506_p50 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34890 | 35261 |
| YP_007005025.1 | NC_019506_p10 | hypothetical protein | phrog_16621 | unknown function | unknown function | 1 | 6611 | 6739 |
| YP_007005055.1 | NC_019506_p40 | uncharacterized phage-encoded protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 29741 | 30487 |
| YP_007005035.1 | NC_019506_p20 | hypothetical protein | phrog_885 | major tail protein | tail | 1 | 14155 | 14754 |
| YP_007005043.1 | NC_019506_p28 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 24829 | 25467 |
| YP_007005021.1 | NC_019506_p6 | protein of unknown function DUF646 | phrog_5 | tail completion or Neck1 protein | connector | 1 | 4551 | 4835 |
| YP_007005056.1 | NC_019506_p41 | hypothetical protein | phrog_17454 | unknown function | unknown function | 1 | 30556 | 30792 |
| YP_007005020.1 | NC_019506_p5 | hypothetical protein | phrog_115 | minor head protein | head and packaging | 1 | 3288 | 4013 |
| YP_007005037.1 | NC_019506_p22 | hypothetical protein | phrog_33913 | unknown function | unknown function | 1 | 15252 | 15419 |
| YP_007005047.1 | NC_019506_p32 | hypothetical protein | phrog_19685 | unknown function | unknown function | 1 | 27521 | 27694 |
| YP_007005049.1 | NC_019506_p34 | hypothetical protein | phrog_17096 | unknown function | unknown function | 1 | 27923 | 28093 |
| YP_007005052.1 | NC_019506_p37 | hypothetical protein | phrog_18566 | unknown function | unknown function | 1 | 29020 | 29145 |
| YP_007005040.1 | NC_019506_p25 | prophage antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 18671 | 19342 |
| YP_007005017.1 | NC_019506_p2 | phage terminase large subunit | phrog_18557 | terminase large subunit | head and packaging | 1 | 1409 | 1675 |
| YP_007005069.1 | NC_019506_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37766 | 37981 |
| YP_007005033.1 | NC_019506_p18 | hypothetical protein | phrog_17977 | unknown function | unknown function | 1 | 13406 | 13741 |
| YP_007005023.1 | NC_019506_p8 | 3''-phosphoadenosine 5''-phosphosulfate sulfotransferase/FAD synthetase-related enzyme | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 5154 | 6122 |
| YP_007005064.1 | NC_019506_p49 | predicted alternative thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 34112 | 34774 |
| YP_007005070.1 | NC_019506_p55 | hypothetical protein | phrog_17705 | unknown function | unknown function | 1 | 37986 | 38327 |
| YP_007005030.1 | NC_019506_p15 | lysophospholipase L1-related esterase | phrog_11541 | unknown function | unknown function | 1 | 11408 | 12556 |
| YP_007005057.1 | NC_019506_p42 | hypothetical protein | phrog_17879 | unknown function | unknown function | 1 | 30785 | 31312 |
| YP_007005036.1 | NC_019506_p21 | hypothetical protein | phrog_18646 | unknown function | unknown function | 1 | 14767 | 15114 |
| YP_007005027.1 | NC_019506_p12 | phage minor structural protein GP20 | phrog_194 | head scaffolding protein | head and packaging | 1 | 8648 | 9238 |
| YP_007005067.1 | NC_019506_p52 | hypothetical protein | phrog_2245 | nucleoside triphosphate pyrophosphohydrolase | other | 1 | 37099 | 37428 |
| YP_007005034.1 | NC_019506_p19 | hypothetical protein | phrog_17405 | head protein | head and packaging | 1 | 13778 | 14143 |
| YP_007005016.1 | NC_019506_p1 | hypothetical protein | phrog_606 | terminase small subunit | head and packaging | 1 | 79 | 426 |
| YP_007005029.1 | NC_019506_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11067 | 11264 |
| YP_007005058.1 | NC_019506_p43 | hypothetical protein | phrog_19908 | unknown function | unknown function | 1 | 31369 | 31500 |
| YP_007005022.1 | NC_019506_p7 | hypothetical protein | phrog_22191 | unknown function | unknown function | 1 | 5007 | 5144 |
| YP_007005041.1 | NC_019506_p26 | phage tail component | phrog_33 | distal tail protein Dit | tail | 1 | 19400 | 20095 |
| YP_007005050.1 | NC_019506_p35 | hypothetical protein | phrog_18689 | unknown function | unknown function | 1 | 28086 | 28346 |
| YP_007005048.1 | NC_019506_p33 | hypothetical protein | phrog_17736 | unknown function | unknown function | 1 | 27678 | 27920 |
| YP_007005031.1 | NC_019506_p16 | hypothetical protein | phrog_2310 | unknown function | unknown function | 1 | 12635 | 12940 |
| YP_007005053.1 | NC_019506_p38 | hypothetical protein | phrog_17646 | unknown function | unknown function | 1 | 29151 | 29372 |