Genomic map of Clostridium phage phiCP13O (NC_019506)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019506
Definition
Clostridium phage phiCP13O, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38329
Host Name
Clostridium perfringens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
30.36
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007005063.1 NC_019506_p48 hypothetical protein phrog_16715 unknown function unknown function 1 33945 34112
YP_007005039.1 NC_019506_p24 phage-related minor tail protein phrog_15478 tail length tape measure protein tail 1 17165 18586
YP_007005019.1 NC_019506_p4 phage portal protein SPP1 phrog_64 portal protein head and packaging 1 1892 3247
YP_007005061.1 NC_019506_p46 ERF superfamily protein singleton unknown function unknown function 1 33063 33383
YP_007005046.1 NC_019506_p31 phage anti-repressor protein phrog_14211 anti-repressor transcription regulation 1 26720 27424
YP_007005051.1 NC_019506_p36 hypothetical protein phrog_3458 unknown function unknown function 1 28348 28554
YP_007005044.1 NC_019506_p29 small integral membrane protein phrog_297 holin lysis 1 25479 25706
YP_007005066.1 NC_019506_p51 CHC2 zinc finger protein phrog_18098 unknown function unknown function 1 35682 36647
YP_007005026.1 NC_019506_p11 predicted P-loop ATPase phrog_1313 DNA helicase DNA, RNA and nucleotide metabolism 1 6753 8012
YP_007005038.1 NC_019506_p23 phage-related minor tail protein phrog_9696 tail length tape measure protein tail 1 15420 16097
YP_007005018.1 NC_019506_p3 protein of unknown function DUF3310 phrog_236 nucleotide kinase other 1 1687 1890
YP_007005062.1 NC_019506_p47 hypothetical protein phrog_3490 ERCC4-type nuclease DNA, RNA and nucleotide metabolism 1 33383 33952
YP_007005054.1 NC_019506_p39 hypothetical protein phrog_18552 unknown function unknown function 1 29488 29739
YP_007005032.1 NC_019506_p17 hypothetical protein phrog_1236 head protein head and packaging 1 12942 13412
YP_007005068.1 NC_019506_p53 hypothetical protein phrog_18244 unknown function unknown function 1 37429 37644
YP_007005024.1 NC_019506_p9 hypothetical protein phrog_16552 unknown function unknown function -1 6361 6486
YP_007005059.1 NC_019506_p44 hypothetical protein phrog_18368 unknown function unknown function 1 32023 32244
YP_007005042.1 NC_019506_p27 predicted hydrolase phrog_7043 tail protein tail 1 21856 22920
YP_007005045.1 NC_019506_p30 hypothetical protein phrog_1193 hemolysin other 1 25707 25967
YP_007005028.1 NC_019506_p13 P22 coat protein phrog_267 major head protein head and packaging 1 9261 10091
YP_007005060.1 NC_019506_p45 ERF superfamily protein singleton unknown function unknown function 1 32794 33045
YP_007005065.1 NC_019506_p50 single-strand binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34890 35261
YP_007005025.1 NC_019506_p10 hypothetical protein phrog_16621 unknown function unknown function 1 6611 6739
YP_007005055.1 NC_019506_p40 uncharacterized phage-encoded protein phrog_63 anti-repressor Ant transcription regulation 1 29741 30487
YP_007005035.1 NC_019506_p20 hypothetical protein phrog_885 major tail protein tail 1 14155 14754
YP_007005043.1 NC_019506_p28 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 24829 25467
YP_007005021.1 NC_019506_p6 protein of unknown function DUF646 phrog_5 tail completion or Neck1 protein connector 1 4551 4835
YP_007005056.1 NC_019506_p41 hypothetical protein phrog_17454 unknown function unknown function 1 30556 30792
YP_007005020.1 NC_019506_p5 hypothetical protein phrog_115 minor head protein head and packaging 1 3288 4013
YP_007005037.1 NC_019506_p22 hypothetical protein phrog_33913 unknown function unknown function 1 15252 15419
YP_007005047.1 NC_019506_p32 hypothetical protein phrog_19685 unknown function unknown function 1 27521 27694
YP_007005049.1 NC_019506_p34 hypothetical protein phrog_17096 unknown function unknown function 1 27923 28093
YP_007005052.1 NC_019506_p37 hypothetical protein phrog_18566 unknown function unknown function 1 29020 29145
YP_007005040.1 NC_019506_p25 prophage antirepressor phrog_463 anti-repressor transcription regulation 1 18671 19342
YP_007005017.1 NC_019506_p2 phage terminase large subunit phrog_18557 terminase large subunit head and packaging 1 1409 1675
YP_007005069.1 NC_019506_p54 hypothetical protein singleton unknown function unknown function 1 37766 37981
YP_007005033.1 NC_019506_p18 hypothetical protein phrog_17977 unknown function unknown function 1 13406 13741
YP_007005023.1 NC_019506_p8 3''-phosphoadenosine 5''-phosphosulfate sulfotransferase/FAD synthetase-related enzyme phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 5154 6122
YP_007005064.1 NC_019506_p49 predicted alternative thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 34112 34774
YP_007005070.1 NC_019506_p55 hypothetical protein phrog_17705 unknown function unknown function 1 37986 38327
YP_007005030.1 NC_019506_p15 lysophospholipase L1-related esterase phrog_11541 unknown function unknown function 1 11408 12556
YP_007005057.1 NC_019506_p42 hypothetical protein phrog_17879 unknown function unknown function 1 30785 31312
YP_007005036.1 NC_019506_p21 hypothetical protein phrog_18646 unknown function unknown function 1 14767 15114
YP_007005027.1 NC_019506_p12 phage minor structural protein GP20 phrog_194 head scaffolding protein head and packaging 1 8648 9238
YP_007005067.1 NC_019506_p52 hypothetical protein phrog_2245 nucleoside triphosphate pyrophosphohydrolase other 1 37099 37428
YP_007005034.1 NC_019506_p19 hypothetical protein phrog_17405 head protein head and packaging 1 13778 14143
YP_007005016.1 NC_019506_p1 hypothetical protein phrog_606 terminase small subunit head and packaging 1 79 426
YP_007005029.1 NC_019506_p14 hypothetical protein singleton unknown function unknown function 1 11067 11264
YP_007005058.1 NC_019506_p43 hypothetical protein phrog_19908 unknown function unknown function 1 31369 31500
YP_007005022.1 NC_019506_p7 hypothetical protein phrog_22191 unknown function unknown function 1 5007 5144
YP_007005041.1 NC_019506_p26 phage tail component phrog_33 distal tail protein Dit tail 1 19400 20095
YP_007005050.1 NC_019506_p35 hypothetical protein phrog_18689 unknown function unknown function 1 28086 28346
YP_007005048.1 NC_019506_p33 hypothetical protein phrog_17736 unknown function unknown function 1 27678 27920
YP_007005031.1 NC_019506_p16 hypothetical protein phrog_2310 unknown function unknown function 1 12635 12940
YP_007005053.1 NC_019506_p38 hypothetical protein phrog_17646 unknown function unknown function 1 29151 29372