Genomic map of Clostridium phage phiCP34O (NC_019508)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019508
Definition
Clostridium phage phiCP34O, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
38309
Host Name
Clostridium perfringens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
30.52
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007005378.1 NC_019508_p51 hypothetical protein phrog_31157 unknown function unknown function 1 37626 37745
YP_007005338.1 NC_019508_p11 phage minor structural protein GP20 phrog_194 head scaffolding protein head and packaging 1 8828 9418
YP_007005365.1 NC_019508_p38 hypothetical protein phrog_17454 unknown function unknown function 1 30311 30547
YP_007005348.1 NC_019508_p21 phage-related minor tail protein phrog_15478 tail length tape measure protein tail 1 16938 18359
YP_007005370.1 NC_019508_p43 hypothetical protein phrog_3490 ERCC4-type nuclease DNA, RNA and nucleotide metabolism 1 33139 33708
YP_007005357.1 NC_019508_p30 hypothetical protein phrog_17096 unknown function unknown function 1 27539 27712
YP_007005335.1 NC_019508_p8 hypothetical protein phrog_16552 unknown function unknown function -1 6541 6666
YP_007005337.1 NC_019508_p10 predicted P-loop ATPase phrog_1313 DNA helicase DNA, RNA and nucleotide metabolism 1 6933 8192
YP_007005351.1 NC_019508_p24 predicted hydrolase phrog_7043 tail protein tail 1 21470 22534
YP_007005332.1 NC_019508_p5 protein of unknown function DUF646 phrog_5 tail completion or Neck1 protein connector 1 4731 5015
YP_007005363.1 NC_019508_p36 hypothetical protein phrog_18552 unknown function unknown function 1 29243 29494
YP_007005376.1 NC_019508_p49 hypothetical protein phrog_34330 unknown function unknown function 1 37185 37421
YP_007005352.1 NC_019508_p25 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 24442 25083
YP_007005328.1 NC_019508_p1 hypothetical protein phrog_606 terminase small subunit head and packaging 1 76 423
YP_007005366.1 NC_019508_p39 hypothetical protein phrog_17879 unknown function unknown function 1 30540 31067
YP_007005346.1 NC_019508_p19 hypothetical protein phrog_33913 unknown function unknown function 1 15025 15192
YP_007005330.1 NC_019508_p3 protein of unknown function DUF3310 phrog_5839 unknown function unknown function 1 1684 2070
YP_007005379.1 NC_019508_p52 hypothetical protein phrog_17705 unknown function unknown function 1 37747 38307
YP_007005347.1 NC_019508_p20 phage-related minor tail protein phrog_9696 tail length tape measure protein tail 1 15193 15870
YP_007005333.1 NC_019508_p6 hypothetical protein phrog_22191 unknown function unknown function 1 5187 5324
YP_007005344.1 NC_019508_p17 hypothetical protein phrog_885 major tail protein tail 1 13928 14527
YP_007005358.1 NC_019508_p31 hypothetical protein phrog_9584 unknown function unknown function 1 27702 27848
YP_007005372.1 NC_019508_p45 predicted alternative thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 33868 34530
YP_007005340.1 NC_019508_p13 lysophospholipase L1-related esterase phrog_11541 unknown function unknown function 1 11338 12705
YP_007005329.1 NC_019508_p2 phage terminase large subunit phrog_18557 terminase large subunit head and packaging 1 1406 1672
YP_007005354.1 NC_019508_p27 hypothetical protein phrog_1193 hemolysin other 1 25323 25583
YP_007005342.1 NC_019508_p15 hypothetical protein phrog_17977 unknown function unknown function 1 13179 13514
YP_007005359.1 NC_019508_p32 hypothetical protein phrog_18689 unknown function unknown function 1 27841 28101
YP_007005364.1 NC_019508_p37 uncharacterized phage-encoded protein phrog_63 anti-repressor Ant transcription regulation 1 29496 30242
YP_007005367.1 NC_019508_p40 hypothetical protein phrog_19908 unknown function unknown function 1 31124 31255
YP_007005369.1 NC_019508_p42 ERF superfamily protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32549 33139
YP_007005353.1 NC_019508_p26 small integral membrane protein phrog_297 holin lysis 1 25095 25322
YP_007005336.1 NC_019508_p9 hypothetical protein phrog_16621 unknown function unknown function 1 6791 6919
YP_007005341.1 NC_019508_p14 hypothetical protein phrog_1236 head protein head and packaging 1 12715 13185
YP_007005331.1 NC_019508_p4 phage portal protein SPP1 phrog_64 portal protein head and packaging 1 2072 3427
YP_007005371.1 NC_019508_p44 hypothetical protein phrog_16715 unknown function unknown function 1 33701 33868
YP_007005360.1 NC_019508_p33 hypothetical protein phrog_3458 unknown function unknown function 1 28103 28309
YP_007005334.1 NC_019508_p7 3''-phosphoadenosine 5''-phosphosulfate sulfotransferase/FAD synthetase-related enzyme phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 5334 6302
YP_007005377.1 NC_019508_p50 hypothetical protein phrog_18244 unknown function unknown function 1 37411 37626
YP_007005374.1 NC_019508_p47 CHC2 zinc finger protein phrog_18098 unknown function unknown function 1 35438 36403
YP_007005362.1 NC_019508_p35 hypothetical protein phrog_17646 unknown function unknown function 1 28906 29127
YP_007005343.1 NC_019508_p16 hypothetical protein phrog_17405 head protein head and packaging 1 13551 13916
YP_007005350.1 NC_019508_p23 phage tail component phrog_33 distal tail protein Dit tail 1 19013 19708
YP_007005345.1 NC_019508_p18 hypothetical protein phrog_18646 unknown function unknown function 1 14540 14887
YP_007005339.1 NC_019508_p12 P22 coat protein phrog_267 major head protein head and packaging 1 9441 10271
YP_007005355.1 NC_019508_p28 phage anti-repressor protein phrog_14211 anti-repressor transcription regulation 1 26336 27040
YP_007005349.1 NC_019508_p22 hypothetical protein singleton unknown function unknown function 1 18460 18954
YP_007005373.1 NC_019508_p46 single-strand binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34646 35017
YP_007005375.1 NC_019508_p48 hypothetical protein phrog_2245 nucleoside triphosphate pyrophosphohydrolase other 1 36855 37184
YP_007005356.1 NC_019508_p29 hypothetical protein phrog_17736 unknown function unknown function 1 27294 27536
YP_007005361.1 NC_019508_p34 hypothetical protein phrog_18566 unknown function unknown function 1 28775 28900
YP_007005368.1 NC_019508_p41 hypothetical protein phrog_18368 unknown function unknown function 1 31781 31999