Genomic map of Cyanophage S-TIM5 (NC_019516)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019516
Definition
Cyanophage S-TIM5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Aurunvirus; Synechococcus virus STIM5.
DB of origin
REFSEQ
Length
161440
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
180
%GC
40.45
Number of singletons
89
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007006019.1 NC_019516_p28 hypothetical protein singleton unknown function unknown function 1 16818 17042
YP_007006006.1 NC_019516_p15 D2 protein phrog_182 photosystem II D1 moron, auxiliary metabolic gene and host takeover 1 9770 10831
YP_007006090.1 NC_019516_p99 virion structural protein singleton unknown function unknown function 1 60506 60934
YP_007006031.1 NC_019516_p40 hypothetical protein phrog_484 unknown function unknown function 1 21373 21603
YP_007006152.1 NC_019516_p161 virion structural protein singleton unknown function unknown function 1 146393 148573
YP_007006159.1 NC_019516_p168 hypothetical protein singleton unknown function unknown function 1 153461 153841
YP_007006128.1 NC_019516_p137 tail fiber protein phrog_529 tail fiber protein tail 1 123310 128802
YP_007005997.1 NC_019516_p6 hypothetical protein singleton unknown function unknown function -1 3328 3606
YP_007006074.1 NC_019516_p83 virion structural protein phrog_976 head maturation protease head and packaging -1 43109 44935
YP_007005999.1 NC_019516_p8 virion structural protein singleton unknown function unknown function -1 4014 4304
YP_007006008.1 NC_019516_p17 hypothetical protein phrog_275 unknown function unknown function 1 11043 11288
YP_007006032.1 NC_019516_p41 hypothetical protein singleton unknown function unknown function 1 21596 21730
YP_007006110.1 NC_019516_p119 phosphate starvation-inducible protein phrog_170 PhoH-like phosphate starvation-inducible other -1 103047 103811
YP_007006085.1 NC_019516_p94 virion structural protein singleton unknown function unknown function -1 53072 56944
YP_007006034.1 NC_019516_p43 hypothetical protein phrog_3704 ferredoxin moron, auxiliary metabolic gene and host takeover 1 22203 22910
YP_007006118.1 NC_019516_p127 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 111028 111342
YP_007006155.1 NC_019516_p164 hypothetical protein singleton unknown function unknown function 1 152030 152452
YP_007006119.1 NC_019516_p128 terminase large subunit phrog_38 terminase large subunit head and packaging -1 111429 113018
YP_007006039.1 NC_019516_p48 hypothetical protein singleton unknown function unknown function 1 24940 25128
YP_007006051.1 NC_019516_p60 SNc family nuclease phrog_452 endonuclease DNA, RNA and nucleotide metabolism 1 29307 29735
YP_007006002.1 NC_019516_p11 DNA alpha glucosyl transferase phrog_2888 alpha-glucosyltransferase other 1 6695 7975
YP_007006022.1 NC_019516_p31 hypothetical protein phrog_417 unknown function unknown function 1 18673 19032
YP_007006053.1 NC_019516_p62 hypothetical protein phrog_605 unknown function unknown function 1 30007 30600
YP_007005996.1 NC_019516_p5 hypothetical protein singleton unknown function unknown function -1 3078 3296
YP_007006086.1 NC_019516_p95 hypothetical protein singleton unknown function unknown function 1 57005 57475
YP_007006027.1 NC_019516_p36 hypothetical protein phrog_728 unknown function unknown function 1 20573 20731
YP_007006067.1 NC_019516_p76 DNA polymerase phrog_22619 DNA polymerase DNA, RNA and nucleotide metabolism 1 36497 39181
YP_007006043.1 NC_019516_p52 hypothetical protein phrog_535 unknown function unknown function 1 25990 26262
YP_007006143.1 NC_019516_p152 cytosine methylase phrog_116 DNA methyltransferase other -1 137201 138418
YP_007006109.1 NC_019516_p118 virion structural protein singleton unknown function unknown function -1 98833 103011
YP_007006150.1 NC_019516_p159 hypothetical protein phrog_25243 DNA primase DNA, RNA and nucleotide metabolism 1 143489 145348
YP_007006014.1 NC_019516_p23 hypothetical protein phrog_516 unknown function unknown function 1 13471 13614
YP_007006100.1 NC_019516_p109 hypothetical protein phrog_580 unknown function unknown function 1 82116 82358
YP_007006161.1 NC_019516_p170 hypothetical protein phrog_1755 unknown function unknown function -1 154544 155119
YP_007006156.1 NC_019516_p165 virion structural protein singleton unknown function unknown function 1 152449 152601
YP_007006107.1 NC_019516_p116 virion structural protein singleton unknown function unknown function 1 93297 96878
YP_007006105.1 NC_019516_p114 virion structural protein singleton unknown function unknown function 1 85692 88868
YP_007006077.1 NC_019516_p86 hypothetical protein singleton unknown function unknown function -1 48659 49096
YP_007006123.1 NC_019516_p132 virion structural protein singleton unknown function unknown function -1 115978 118098
YP_007006049.1 NC_019516_p58 transaldolase phrog_440 transaldolase other 1 28213 28869
YP_007006012.1 NC_019516_p21 hypothetical protein singleton unknown function unknown function 1 12313 13089
YP_007006104.1 NC_019516_p113 virion structural protein singleton unknown function unknown function 1 83268 85637
YP_007006069.1 NC_019516_p78 hypothetical protein singleton unknown function unknown function -1 39430 40374
YP_007006134.1 NC_019516_p143 ribonucleotide diphosphate reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 131501 132496
YP_007006081.1 NC_019516_p90 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 50211 50618
YP_007006025.1 NC_019516_p34 hypothetical protein singleton unknown function unknown function 1 20300 20383
YP_007006021.1 NC_019516_p30 hypothetical protein phrog_417 unknown function unknown function 1 18124 18495
YP_007006144.1 NC_019516_p153 virion structural protein singleton unknown function unknown function 1 138493 140151
YP_007006076.1 NC_019516_p85 hypothetical protein singleton unknown function unknown function -1 48420 48662
YP_007006117.1 NC_019516_p126 sigma factor SigF singleton unknown function unknown function -1 110261 111031
YP_007006094.1 NC_019516_p103 virion structural protein singleton unknown function unknown function 1 65460 65705
YP_007006126.1 NC_019516_p135 virion structural protein singleton unknown function unknown function -1 121765 122652
YP_007006151.1 NC_019516_p160 hypothetical protein singleton unknown function unknown function 1 145378 146364
YP_007006035.1 NC_019516_p44 hypothetical protein phrog_375 Phd-like antitoxin moron, auxiliary metabolic gene and host takeover 1 22994 23158
YP_007006016.1 NC_019516_p25 hypothetical protein phrog_7802 unknown function unknown function 1 15520 15975
YP_007006154.1 NC_019516_p163 virion structural protein phrog_43 baseplate wedge subunit tail 1 151504 152037
YP_007006082.1 NC_019516_p91 hypothetical protein singleton unknown function unknown function 1 50618 50962
YP_007006033.1 NC_019516_p42 hypothetical protein phrog_451 unknown function unknown function 1 21779 22174
YP_007006024.1 NC_019516_p33 high light inducible protein phrog_178 high light inducible protein other 1 20097 20300
YP_007006158.1 NC_019516_p167 hypothetical protein singleton unknown function unknown function 1 152930 153409
YP_007006113.1 NC_019516_p122 virion structural protein singleton unknown function unknown function 1 105154 105909
YP_007006164.1 NC_019516_p173 hypothetical protein phrog_564 unknown function unknown function -1 155757 156248
YP_007006168.1 NC_019516_p177 hypothetical protein singleton unknown function unknown function 1 159040 159249
YP_007006072.1 NC_019516_p81 major capsid protein phrog_1005 major head protein head and packaging -1 41591 42574
YP_007006020.1 NC_019516_p29 serine/threonine protein kinase singleton unknown function unknown function 1 17151 17978
YP_007006041.1 NC_019516_p50 hypothetical protein phrog_495 unknown function unknown function 1 25419 25628
YP_007006157.1 NC_019516_p166 hypothetical protein singleton unknown function unknown function 1 152638 152949
YP_007006120.1 NC_019516_p129 hypothetical protein singleton unknown function unknown function -1 112975 114594
YP_007006000.1 NC_019516_p9 hypothetical protein singleton unknown function unknown function 1 4367 4732
YP_007006091.1 NC_019516_p100 hypothetical protein singleton unknown function unknown function 1 60961 62418
YP_007006171.1 NC_019516_p180 hypothetical protein singleton unknown function unknown function -1 161153 161350
YP_007006061.1 NC_019516_p70 hypothetical protein singleton unknown function unknown function 1 33057 33530
YP_007006147.1 NC_019516_p156 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 140802 141638
YP_007006070.1 NC_019516_p79 virion structural protein singleton unknown function unknown function -1 40374 40709
YP_007006011.1 NC_019516_p20 hypothetical protein singleton unknown function unknown function 1 12003 12341
YP_007006060.1 NC_019516_p69 hypothetical protein phrog_2075 unknown function unknown function 1 32920 33060
YP_007006142.1 NC_019516_p151 hypothetical protein phrog_545 unknown function unknown function 1 136733 136900
YP_007006066.1 NC_019516_p75 hypothetical protein singleton unknown function unknown function 1 35987 36451
YP_007006125.1 NC_019516_p134 virion structural protein phrog_6 baseplate wedge subunit tail -1 120451 121761
YP_007006026.1 NC_019516_p35 hypothetical protein phrog_961 unknown function unknown function 1 20383 20571
YP_007006030.1 NC_019516_p39 hypothetical protein phrog_1181 unknown function unknown function 1 21174 21395
YP_007006089.1 NC_019516_p98 portal protein phrog_113 portal protein head and packaging 1 58596 60455
YP_007006141.1 NC_019516_p150 hypothetical protein phrog_504 unknown function unknown function 1 136524 136691
YP_007005995.1 NC_019516_p4 hypothetical protein singleton unknown function unknown function -1 1856 3076
YP_007006121.1 NC_019516_p130 hypothetical protein singleton unknown function unknown function -1 114599 114934
YP_007006153.1 NC_019516_p162 virion structural protein singleton unknown function unknown function 1 148577 151498
YP_007006169.1 NC_019516_p178 virion structural protein singleton virion structural protein head and packaging 1 159249 160472
YP_007006003.1 NC_019516_p12 D1 protein phrog_182 photosystem II D1 moron, auxiliary metabolic gene and host takeover 1 8197 9279
YP_007006075.1 NC_019516_p84 tail sheath protein phrog_17610 tail sheath tail -1 44941 48354
YP_007006133.1 NC_019516_p142 serine/threonine protein phosphatase singleton unknown function unknown function 1 130765 131499
YP_007006145.1 NC_019516_p154 hypothetical protein singleton unknown function unknown function 1 140138 140521
YP_007006042.1 NC_019516_p51 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 25621 25863
YP_007006055.1 NC_019516_p64 hypothetical protein phrog_1096 unknown function unknown function 1 31096 31308
YP_007006093.1 NC_019516_p102 virion structural protein singleton unknown function unknown function 1 63374 65398
YP_007006087.1 NC_019516_p96 hypothetical protein singleton unknown function unknown function 1 57444 58409
YP_007006124.1 NC_019516_p133 virion structural protein singleton unknown function unknown function -1 118104 120449
YP_007006088.1 NC_019516_p97 hypothetical protein singleton unknown function unknown function 1 58385 58579
YP_007005993.1 NC_019516_p2 hypothetical protein singleton unknown function unknown function 1 687 758
YP_007006009.1 NC_019516_p18 hypothetical protein singleton unknown function unknown function 1 11326 11508
YP_007006095.1 NC_019516_p104 virion structural protein phrog_1276 unknown function unknown function 1 65715 66095
YP_007006136.1 NC_019516_p145 HNH endonuclease phrog_959 HNH endonuclease DNA, RNA and nucleotide metabolism 1 132729 133091
YP_007006078.1 NC_019516_p87 hypothetical protein singleton unknown function unknown function -1 49089 49433
YP_007006106.1 NC_019516_p115 virion structural protein singleton unknown function unknown function 1 88872 93290
YP_007006096.1 NC_019516_p105 hypothetical protein phrog_9942 tail fiber protein tail 1 66101 70348
YP_007006038.1 NC_019516_p47 hypothetical protein phrog_27081 unknown function unknown function 1 24776 24940
YP_007006115.1 NC_019516_p124 hypothetical protein singleton unknown function unknown function 1 109040 109672
YP_007006007.1 NC_019516_p16 hypothetical protein singleton unknown function unknown function 1 10846 11046
YP_007006013.1 NC_019516_p22 S-adenosylmethionine decarboxylase phrog_3125 S-adenosylmethionine decarboxylase other 1 13091 13435
YP_007006149.1 NC_019516_p158 hypothetical protein singleton unknown function unknown function 1 142970 143419
YP_007006166.1 NC_019516_p175 MoxR-like ATPase phrog_1297 ATPase other 1 156868 157863
YP_007006001.1 NC_019516_p10 DNA gyrase subunit A phrog_551 DNA topoisomerase II DNA, RNA and nucleotide metabolism 1 4760 6652
YP_007006046.1 NC_019516_p55 hypothetical protein phrog_512 unknown function unknown function 1 27005 27604
YP_007006005.1 NC_019516_p14 hypothetical protein phrog_475 unknown function unknown function 1 9378 9767
YP_007006010.1 NC_019516_p19 hypothetical protein phrog_2714 unknown function unknown function 1 11572 11937
YP_007006132.1 NC_019516_p141 virion structural protein singleton unknown function unknown function 1 130527 130709
YP_007006137.1 NC_019516_p146 ribonucleoside-diphosphate reductase alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 133152 135062
YP_007006114.1 NC_019516_p123 virion structural protein singleton unknown function unknown function 1 106050 109043
YP_007006048.1 NC_019516_p57 plastocyanin phrog_515 PetE plastocyanine other 1 27938 28210
YP_007006028.1 NC_019516_p37 high light inducible protein phrog_178 high light inducible protein other 1 20721 20834
YP_007005992.1 NC_019516_p1 hypothetical protein singleton unknown function unknown function 1 470 634
YP_007006004.1 NC_019516_p13 hypothetical protein singleton unknown function unknown function 1 9283 9381
YP_007006040.1 NC_019516_p49 hypothetical protein phrog_507 unknown function unknown function 1 25151 25468
YP_007006045.1 NC_019516_p54 hypothetical protein phrog_568 plasmid stability DNA, RNA and nucleotide metabolism 1 26632 26871
YP_007006148.1 NC_019516_p157 hypothetical protein phrog_26716 polymerase DNA, RNA and nucleotide metabolism 1 141635 142891
YP_007006080.1 NC_019516_p89 hypothetical protein singleton unknown function unknown function 1 49909 50181
YP_007006073.1 NC_019516_p82 virion structural protein singleton head scaffolding protein head and packaging -1 42597 43097
YP_007006036.1 NC_019516_p45 hypothetical protein phrog_591 unknown function unknown function 1 23412 24089
YP_007006097.1 NC_019516_p106 hypothetical protein singleton unknown function unknown function 1 70768 72183
YP_007006162.1 NC_019516_p171 hypothetical protein singleton unknown function unknown function 1 155199 155309
YP_007006111.1 NC_019516_p120 virion structural protein singleton unknown function unknown function -1 103905 104477
YP_007006170.1 NC_019516_p179 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 160516 161187
YP_007006139.1 NC_019516_p148 HNH endonuclease phrog_16726 HNH endonuclease DNA, RNA and nucleotide metabolism 1 135742 136236
YP_007006023.1 NC_019516_p32 phosphate ABC transporter substrate-binding protein phrog_5385 phosphate transporter subunit moron, auxiliary metabolic gene and host takeover 1 19055 20023
YP_007006050.1 NC_019516_p59 hypothetical protein phrog_4136 unknown function unknown function 1 28974 29237
YP_007006163.1 NC_019516_p172 hypothetical protein phrog_650 unknown function unknown function -1 155299 155751
YP_007005998.1 NC_019516_p7 hypothetical protein phrog_1276 unknown function unknown function -1 3612 4007
YP_007006160.1 NC_019516_p169 hypothetical protein phrog_570 unknown function unknown function 1 153841 154650
YP_007006129.1 NC_019516_p138 hypothetical protein singleton unknown function unknown function 1 128807 129115
YP_007006122.1 NC_019516_p131 hypothetical protein singleton unknown function unknown function -1 114982 115965
YP_007006037.1 NC_019516_p46 hypothetical protein phrog_1615 unknown function unknown function 1 24358 24786
YP_007006165.1 NC_019516_p174 heat shock protein Hsp20 phrog_432 Hsp20 heat shock protein other 1 156373 156807
YP_007006102.1 NC_019516_p111 hypothetical protein singleton unknown function unknown function -1 82673 83002
YP_007005994.1 NC_019516_p3 hypothetical protein singleton unknown function unknown function 1 789 1859
YP_007006098.1 NC_019516_p107 virion structural protein phrog_19195 virion structural protein head and packaging 1 72219 76610
YP_007006138.1 NC_019516_p147 hypothetical protein singleton unknown function unknown function 1 135140 135601
YP_007006131.1 NC_019516_p140 hypothetical protein phrog_4228 unknown function unknown function 1 130203 130457
YP_007006056.1 NC_019516_p65 hypothetical protein phrog_1953 unknown function unknown function 1 31287 31469
YP_007006018.1 NC_019516_p27 hypothetical protein phrog_2818 unknown function unknown function 1 16643 16813
YP_007006092.1 NC_019516_p101 virion structural protein singleton unknown function unknown function 1 62432 63370
YP_007006112.1 NC_019516_p121 hypothetical protein singleton unknown function unknown function 1 104560 105123
YP_007006065.1 NC_019516_p74 hypothetical protein phrog_624 DNA binding protein DNA, RNA and nucleotide metabolism 1 35302 35817
YP_007006071.1 NC_019516_p80 hypothetical protein phrog_195 head-tail adaptor connector -1 40709 41506
YP_007006084.1 NC_019516_p93 hypothetical protein singleton unknown function unknown function -1 51957 53075
YP_007006059.1 NC_019516_p68 hypothetical protein phrog_2832 unknown function unknown function 1 32736 32945
YP_007006064.1 NC_019516_p73 hypothetical protein singleton unknown function unknown function 1 35128 35253
YP_007006015.1 NC_019516_p24 tail fiber protein phrog_967 baseplate wedge tail fiber protein connector tail -1 13627 15321
YP_007006062.1 NC_019516_p71 glucose 6-phosphate dehydrogenase phrog_4941 dehydrogenase other 1 33618 34985
YP_007006057.1 NC_019516_p66 6-phosphogluconate dehydrogenase phrog_1319 dehydrogenase other 1 31466 32503
YP_007006054.1 NC_019516_p63 plastoquinol terminal oxidase phrog_4235 plastoquinol terminal oxidase moron, auxiliary metabolic gene and host takeover 1 30593 31099
YP_007006108.1 NC_019516_p117 virion structural protein singleton unknown function unknown function 1 96902 98836
YP_007006103.1 NC_019516_p112 hypothetical protein singleton unknown function unknown function -1 83002 83178
YP_007006140.1 NC_019516_p149 hypothetical protein phrog_6471 unknown function unknown function 1 136288 136488
YP_007006135.1 NC_019516_p144 hypothetical protein singleton unknown function unknown function 1 132496 132639
YP_007006029.1 NC_019516_p38 hypothetical protein phrog_566 unknown function unknown function 1 21005 21172
YP_007006146.1 NC_019516_p155 hypothetical protein singleton unknown function unknown function 1 140514 140753
YP_007006099.1 NC_019516_p108 virion structural protein phrog_9942 tail fiber protein tail 1 76676 82036
YP_007006044.1 NC_019516_p53 hypothetical protein singleton unknown function unknown function -1 26328 26444
YP_007006047.1 NC_019516_p56 hypothetical protein singleton unknown function unknown function -1 27655 27939
YP_007006058.1 NC_019516_p67 hypothetical protein phrog_16669 unknown function unknown function 1 32503 32739
YP_007006017.1 NC_019516_p26 hypothetical protein phrog_1574 unknown function unknown function 1 15972 16646
YP_007006116.1 NC_019516_p125 hypothetical protein singleton unknown function unknown function -1 109656 110231
YP_007006130.1 NC_019516_p139 hypothetical protein phrog_25892 unknown function unknown function 1 129224 130147
YP_007006127.1 NC_019516_p136 hypothetical protein singleton unknown function unknown function 1 122737 123291
YP_007006063.1 NC_019516_p72 hypothetical protein singleton unknown function unknown function 1 34982 35128
YP_007006167.1 NC_019516_p176 hypothetical protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 157860 159008
YP_007006079.1 NC_019516_p88 virion structural protein singleton unknown function unknown function 1 49514 49912
YP_007006052.1 NC_019516_p61 CP12 protein phrog_627 unknown function unknown function 1 29738 29950
YP_007006068.1 NC_019516_p77 hypothetical protein singleton unknown function unknown function 1 39249 39443
YP_007006083.1 NC_019516_p92 virion structural protein singleton unknown function unknown function -1 50965 51933
YP_007006101.1 NC_019516_p110 hypothetical protein phrog_485 unknown function unknown function -1 82413 82673