| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019520 |
Definition |
Escherichia phage phiKT, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Ermolevavirus; Escherichia virus PhiKT. |
DB of origin |
REFSEQ |
Length |
42608 |
Host Name |
Escherichia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
31 |
%GC |
51.58 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007006609.1 | NC_019520_p26 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 34288 | 36093 |
| YP_007006594.1 | NC_019520_p11 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 11223 | 11942 |
| YP_007006584.1 | NC_019520_p1 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 2105 | 2923 |
| YP_007006592.1 | NC_019520_p9 | exonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 9736 | 10215 |
| YP_007006587.1 | NC_019520_p4 | replication initiation protein | phrog_154 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 4764 | 5057 |
| YP_007006591.1 | NC_019520_p8 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 8754 | 9722 |
| YP_007006585.1 | NC_019520_p2 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 3027 | 4193 |
| YP_007006602.1 | NC_019520_p19 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 21090 | 23720 |
| YP_007006613.1 | NC_019520_p30 | phage tail tape measure protein | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 39756 | 40250 |
| YP_007006588.1 | NC_019520_p5 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5057 | 7450 |
| YP_007006612.1 | NC_019520_p29 | phage holin protein | phrog_175 | holin | lysis | 1 | 37282 | 37665 |
| YP_007006605.1 | NC_019520_p22 | internal virion protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 26889 | 31091 |
| YP_007006597.1 | NC_019520_p14 | hypothetical protein | phrog_37045 | unknown function | unknown function | 1 | 14896 | 15330 |
| YP_007006606.1 | NC_019520_p23 | hypothetical membrane fusion protein | singleton | unknown function | unknown function | 1 | 31063 | 31173 |
| YP_007006596.1 | NC_019520_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14529 | 14924 |
| YP_007006600.1 | NC_019520_p17 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 19428 | 20411 |
| YP_007006604.1 | NC_019520_p21 | hypothetical protein | phrog_3883 | internal virion protein | head and packaging | 1 | 24560 | 26869 |
| YP_007006595.1 | NC_019520_p12 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11896 | 14367 |
| YP_007006611.1 | NC_019520_p28 | hypothetical OmpW family transmembrane protein | phrog_35982 | unknown function | unknown function | 1 | 37102 | 37272 |
| YP_007006614.1 | NC_019520_p31 | hypothetical protein | phrog_10124 | unknown function | unknown function | 1 | 40252 | 40500 |
| YP_007006599.1 | NC_019520_p16 | scaffold-like protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 18458 | 19378 |
| YP_007006586.1 | NC_019520_p3 | deoxyribonucleoside 5'-monophosphate phosphatase | phrog_318 | deoxyribonucleoside 5' monophosphate phosphatase | other | 1 | 4190 | 4777 |
| YP_007006593.1 | NC_019520_p10 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 10205 | 11182 |
| YP_007006598.1 | NC_019520_p15 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 16895 | 18448 |
| YP_007006607.1 | NC_019520_p24 | tail fiber protein | phrog_13173 | tail fiber protein | tail | 1 | 31133 | 33916 |
| YP_007006590.1 | NC_019520_p7 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 7814 | 8752 |
| YP_007006589.1 | NC_019520_p6 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7435 | 7821 |
| YP_007006608.1 | NC_019520_p25 | hypothetical protein | phrog_34686 | unknown function | unknown function | 1 | 33926 | 34297 |
| YP_007006610.1 | NC_019520_p27 | phage endolysin | phrog_10457 | endolysin | lysis | 1 | 36780 | 37109 |
| YP_007006603.1 | NC_019520_p20 | hypothetical protein | phrog_37425 | unknown function | unknown function | 1 | 23723 | 24550 |
| YP_007006601.1 | NC_019520_p18 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 20472 | 21086 |