| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019523 |
Definition |
Clostridium phage phi24R, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
18919 |
Host Name |
Clostridium perfringens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
22 |
%GC |
27.8 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007006984.1 | NC_019523_p7 | hypothetical protein | phrog_14578 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 5002 | 5583 |
| YP_007006979.1 | NC_019523_p2 | hypothetical protein | phrog_28736 | unknown function | unknown function | 1 | 458 | 613 |
| YP_007006992.1 | NC_019523_p15 | hypothetical protein | phrog_4898 | holin | lysis | 1 | 11822 | 11995 |
| YP_007006990.1 | NC_019523_p13 | tail protein | phrog_16740 | tail protein | tail | 1 | 9933 | 11180 |
| YP_007006996.1 | NC_019523_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13863 | 14228 |
| YP_007006983.1 | NC_019523_p6 | DNA encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 3872 | 4894 |
| YP_007006988.1 | NC_019523_p11 | hypothetical protein | phrog_2006 | major head protein | head and packaging | 1 | 7392 | 8384 |
| YP_007006993.1 | NC_019523_p16 | connector | phrog_2038 | upper collar connector | connector | 1 | 12025 | 12927 |
| YP_007006982.1 | NC_019523_p5 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1561 | 3870 |
| YP_007006986.1 | NC_019523_p9 | hypothetical protein | phrog_29684 | unknown function | unknown function | 1 | 6019 | 6276 |
| YP_007006994.1 | NC_019523_p17 | lower collar protein | phrog_5472 | lower collar | tail | 1 | 12887 | 13591 |
| YP_007006995.1 | NC_019523_p18 | hypothetical protein | phrog_29468 | unknown function | unknown function | 1 | 13603 | 13863 |
| YP_007006987.1 | NC_019523_p10 | major head protein | phrog_2006 | major head protein | head and packaging | 1 | 6278 | 7378 |
| YP_007006980.1 | NC_019523_p3 | hypothetical protein | phrog_29355 | unknown function | unknown function | 1 | 621 | 830 |
| YP_007006991.1 | NC_019523_p14 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 11184 | 11822 |
| YP_007006978.1 | NC_019523_p1 | hypothetical protein | phrog_918 | unknown function | unknown function | 1 | 46 | 309 |
| YP_007006985.1 | NC_019523_p8 | hypothetical protein | phrog_28166 | unknown function | unknown function | 1 | 5637 | 5873 |
| YP_007006998.1 | NC_019523_p21 | pre-neck appendage | phrog_17212 | pre-neck appendage protein | connector | 1 | 16425 | 18254 |
| YP_007006981.1 | NC_019523_p4 | hypothetical protein | phrog_28144 | unknown function | unknown function | 1 | 799 | 1539 |
| YP_007006997.1 | NC_019523_p20 | zinc carboxypeptidase | singleton | unknown function | unknown function | 1 | 14444 | 16432 |
| YP_007006989.1 | NC_019523_p12 | lysozyme-peptidase | phrog_16615 | peptidase | other | 1 | 8377 | 9942 |
| YP_007006999.1 | NC_019523_p22 | hypothetical protein | phrog_29298 | unknown function | unknown function | -1 | 18269 | 18622 |