Genomic map of Vibrio phage pVp-1 (NC_019529)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019529
Definition
Vibrio phage pVp-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Ermolyevavirinae; Vipunavirus; Vibrio virus pVp1.
DB of origin
REFSEQ
Length
111506
Host Name
Vibrio parahaemolyticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
157
%GC
39.7
Number of singletons
10
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007007854.1 NC_019529_p31 hypothetical protein singleton unknown function unknown function -1 22587 22778
YP_007007926.1 NC_019529_p103 hypothetical protein phrog_21692 unknown function unknown function 1 65632 66015
YP_007007892.1 NC_019529_p69 hypothetical protein phrog_1491 tail fiber protein tail 1 45662 46285
YP_007007857.1 NC_019529_p34 hypothetical protein phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 26834 28987
YP_007007840.1 NC_019529_p17 D5 protein phrog_323 transcriptional regulator, D5-like transcription regulation -1 14548 15312
YP_007007873.1 NC_019529_p50 hypothetical protein phrog_774 unknown function unknown function 1 35736 35933
YP_007007863.1 NC_019529_p40 hypothetical protein phrog_1017 unknown function unknown function 1 32871 33314
YP_007007899.1 NC_019529_p76 hypothetical protein phrog_10818 unknown function unknown function 1 51235 53820
YP_007007865.1 NC_019529_p42 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism 1 33503 33961
YP_007007847.1 NC_019529_p24 hypothetical protein phrog_20178 unknown function unknown function -1 18862 19095
YP_007007869.1 NC_019529_p46 hypothetical protein phrog_4991 unknown function unknown function 1 34703 34969
YP_007007913.1 NC_019529_p90 hypothetical protein phrog_25789 unknown function unknown function 1 59402 59626
YP_007007839.1 NC_019529_p16 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 13087 14487
YP_007007898.1 NC_019529_p75 hypothetical protein phrog_22875 unknown function unknown function 1 48714 51221
YP_007007959.1 NC_019529_p136 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 82810 83478
YP_007007884.1 NC_019529_p61 hypothetical protein phrog_21860 unknown function unknown function 1 42571 42774
YP_007007927.1 NC_019529_p104 hypothetical protein phrog_29690 unknown function unknown function 1 66056 66574
YP_007007964.1 NC_019529_p141 portal protein phrog_12 portal protein head and packaging 1 87893 89119
YP_007007931.1 NC_019529_p108 hypothetical protein phrog_1383 virion structural protein head and packaging 1 68267 68827
YP_007007849.1 NC_019529_p26 hypothetical protein phrog_3696 unknown function unknown function -1 19414 19734
YP_007007936.1 NC_019529_p113 hypothetical protein phrog_26289 unknown function unknown function 1 70306 70455
YP_007007967.1 NC_019529_p144 major head protein precursor phrog_10 major head protein head and packaging 1 89954 91351
YP_007007930.1 NC_019529_p107 hypothetical protein phrog_2087 unknown function unknown function 1 67301 68263
YP_007007946.1 NC_019529_p123 hypothetical protein phrog_24934 unknown function unknown function 1 73514 74662
YP_007007834.1 NC_019529_p11 hypothetical protein phrog_25412 unknown function unknown function -1 7269 7667
YP_007007924.1 NC_019529_p101 hypothetical protein phrog_31916 unknown function unknown function 1 65149 65349
YP_007007832.1 NC_019529_p9 D11 protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 6049 6852
YP_007007866.1 NC_019529_p43 hypothetical protein phrog_26750 unknown function unknown function 1 33958 34158
YP_007007861.1 NC_019529_p38 hypothetical protein phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism 1 31926 32399
YP_007007979.1 NC_019529_p156 tail protein phrog_3890 straight fibre tail protein tail 1 103858 106944
YP_007007935.1 NC_019529_p112 hypothetical protein phrog_531 Rnase H DNA, RNA and nucleotide metabolism 1 69755 70312
YP_007007961.1 NC_019529_p138 hypothetical protein phrog_3802 terminase small subunit head and packaging 1 85549 86019
YP_007007920.1 NC_019529_p97 hypothetical protein phrog_11908 unknown function unknown function 1 62145 63392
YP_007007891.1 NC_019529_p68 hypothetical protein phrog_26556 unknown function unknown function 1 45328 45492
YP_007007975.1 NC_019529_p152 hypothetical protein phrog_15693 unknown function unknown function 1 96394 97152
YP_007007848.1 NC_019529_p25 hypothetical protein phrog_4053 transcriptional regulator transcription regulation -1 19125 19430
YP_007007894.1 NC_019529_p71 hypothetical protein phrog_739 Rz-like spanin lysis 1 46912 47283
YP_007007831.1 NC_019529_p8 hypothetical protein phrog_15738 unknown function unknown function -1 5625 6002
YP_007007896.1 NC_019529_p73 hydrolase phrog_139 deoxynucleoside monophosphate kinase other 1 47563 48210
YP_007007907.1 NC_019529_p84 hypothetical protein phrog_990 metal-dependent phosphohydrolase other 1 56751 57212
YP_007007901.1 NC_019529_p78 hypothetical protein phrog_25455 unknown function unknown function 1 54314 54721
YP_007007835.1 NC_019529_p12 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 7700 9055
YP_007007825.1 NC_019529_p2 deoxyUTP pyrophosphatase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 690 1142
YP_007007859.1 NC_019529_p36 hypothetical protein phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 29238 30230
YP_007007971.1 NC_019529_p148 major tail protein phrog_3575 major tail protein tail 1 93197 94612
YP_007007837.1 NC_019529_p14 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 9557 12130
YP_007007952.1 NC_019529_p129 hypothetical protein phrog_24651 unknown function unknown function -1 77316 77708
YP_007007886.1 NC_019529_p63 hypothetical protein phrog_1880 PnuC-like nicotinamide mononucleotide transport moron, auxiliary metabolic gene and host takeover 1 43348 43980
YP_007007972.1 NC_019529_p149 minor tail protein phrog_3889 base plate tail tube protein tail 1 94618 95502
YP_007007897.1 NC_019529_p74 hypothetical protein phrog_16185 tail protein tail 1 48368 48703
YP_007007877.1 NC_019529_p54 hypothetical protein phrog_15472 unknown function unknown function 1 37383 37619
YP_007007868.1 NC_019529_p45 hypothetical protein phrog_7471 unknown function unknown function 1 34443 34634
YP_007007937.1 NC_019529_p114 hypothetical protein phrog_30436 unknown function unknown function 1 70457 71092
YP_007007909.1 NC_019529_p86 hypothetical protein phrog_3880 unknown function unknown function 1 58382 58684
YP_007007917.1 NC_019529_p94 hypothetical protein phrog_17052 unknown function unknown function 1 60311 60622
YP_007007974.1 NC_019529_p151 hypothetical protein phrog_3914 tail assembly chaperone tail 1 95920 96312
YP_007007970.1 NC_019529_p147 hypothetical protein phrog_3907 tail terminator connector 1 92697 93182
YP_007007958.1 NC_019529_p135 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other 1 82024 82662
YP_007007906.1 NC_019529_p83 peptidase M15 family protein phrog_894 endolysin lysis 1 56268 56657
YP_007007880.1 NC_019529_p57 hypothetical protein phrog_21300 unknown function unknown function 1 40243 40425
YP_007007858.1 NC_019529_p35 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 29026 29238
YP_007007939.1 NC_019529_p116 hypothetical protein singleton unknown function unknown function 1 71463 71714
YP_007007953.1 NC_019529_p130 hypothetical protein phrog_16450 unknown function unknown function -1 77805 78125
YP_007007895.1 NC_019529_p72 hypothetical protein phrog_812 Rz-like spanin lysis 1 47280 47573
YP_007007888.1 NC_019529_p65 hypothetical protein phrog_24847 unknown function unknown function 1 44316 44462
YP_007007980.1 NC_019529_p157 tail protein phrog_15373 L-shaped tail fiber protein assembly tail 1 106947 107729
YP_007007944.1 NC_019529_p121 hypothetical protein phrog_21808 unknown function unknown function 1 72907 73146
YP_007007916.1 NC_019529_p93 hypothetical protein phrog_26748 unknown function unknown function 1 60150 60314
YP_007007969.1 NC_019529_p146 hypothetical protein phrog_3725 tail completion or Neck1 protein connector 1 91954 92700
YP_007007921.1 NC_019529_p98 hypothetical protein phrog_26271 unknown function unknown function 1 63456 63854
YP_007007883.1 NC_019529_p60 hypothetical protein phrog_17966 unknown function unknown function 1 42004 42186
YP_007007941.1 NC_019529_p118 hypothetical protein singleton unknown function unknown function 1 72090 72470
YP_007007887.1 NC_019529_p64 hypothetical protein phrog_10957 unknown function unknown function 1 44063 44323
YP_007007833.1 NC_019529_p10 hypothetical protein singleton unknown function unknown function -1 6849 7052
YP_007007867.1 NC_019529_p44 hypothetical protein phrog_21996 unknown function unknown function 1 34206 34439
YP_007007903.1 NC_019529_p80 hypothetical protein phrog_16916 unknown function unknown function 1 55007 55165
YP_007007851.1 NC_019529_p28 D2 protein phrog_3611 helicase DNA, RNA and nucleotide metabolism -1 20262 21092
YP_007007908.1 NC_019529_p85 hypothetical protein phrog_624 DNA binding protein DNA, RNA and nucleotide metabolism 1 57269 58309
YP_007007905.1 NC_019529_p82 holin phrog_860 holin lysis 1 55595 56266
YP_007007923.1 NC_019529_p100 hypothetical protein phrog_246 NinI-like serine-threonine phosphatase other 1 64347 65087
YP_007007925.1 NC_019529_p102 hypothetical protein phrog_31261 unknown function unknown function 1 65349 65645
YP_007007843.1 NC_019529_p20 hypothetical protein phrog_23191 unknown function unknown function -1 17008 17229
YP_007007929.1 NC_019529_p106 hypothetical protein phrog_31435 unknown function unknown function 1 66942 67148
YP_007007836.1 NC_019529_p13 hypothetical protein phrog_4386 unknown function unknown function -1 9052 9567
YP_007007879.1 NC_019529_p56 hypothetical protein phrog_5018 unknown function unknown function 1 39330 39698
YP_007007962.1 NC_019529_p139 terminase large subunit phrog_2 terminase large subunit head and packaging 1 86019 87338
YP_007007852.1 NC_019529_p29 hypothetical protein phrog_21646 unknown function unknown function -1 21302 21514
YP_007007845.1 NC_019529_p22 hypothetical protein phrog_19164 unknown function unknown function -1 18231 18497
YP_007007918.1 NC_019529_p95 hypothetical protein phrog_19380 unknown function unknown function 1 60687 61925
YP_007007966.1 NC_019529_p143 prohead protease phrog_80 head maturation protease head and packaging 1 89341 89946
YP_007007949.1 NC_019529_p126 hypothetical protein phrog_15257 unknown function unknown function -1 76295 76516
YP_007007938.1 NC_019529_p115 hypothetical protein phrog_22227 unknown function unknown function 1 71153 71485
YP_007007956.1 NC_019529_p133 hypothetical protein phrog_15459 unknown function unknown function 1 79815 80186
YP_007007910.1 NC_019529_p87 hypothetical protein singleton unknown function unknown function 1 58704 58856
YP_007007890.1 NC_019529_p67 hypothetical protein phrog_23963 unknown function unknown function 1 45031 45225
YP_007007947.1 NC_019529_p124 hypothetical protein phrog_16854 unknown function unknown function 1 74652 75011
YP_007007846.1 NC_019529_p23 hypothetical protein phrog_16618 unknown function unknown function -1 18497 18862
YP_007007940.1 NC_019529_p117 hypothetical protein singleton unknown function unknown function 1 71692 72018
YP_007007828.1 NC_019529_p5 hypothetical protein singleton unknown function unknown function -1 2492 2785
YP_007007844.1 NC_019529_p21 NAD-dependent DNA ligase subunit A phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 17229 18197
YP_007007933.1 NC_019529_p110 hypothetical protein phrog_26965 unknown function unknown function 1 69183 69509
YP_007007950.1 NC_019529_p127 hypothetical protein phrog_16136 unknown function unknown function -1 76516 76710
YP_007007942.1 NC_019529_p119 hypothetical protein phrog_20180 unknown function unknown function 1 72472 72714
YP_007007830.1 NC_019529_p7 recombination endonuclease subunit D12 phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 4642 5625
YP_007007963.1 NC_019529_p140 hypothetical protein phrog_3497 unknown function unknown function 1 87420 87890
YP_007007827.1 NC_019529_p4 D14 protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 2011 2499
YP_007007945.1 NC_019529_p122 hypothetical protein phrog_22092 unknown function unknown function 1 73113 73247
YP_007007870.1 NC_019529_p47 hypothetical protein phrog_15847 unknown function unknown function 1 35038 35313
YP_007007824.1 NC_019529_p1 hypothetical protein phrog_21772 unknown function unknown function 1 109 663
YP_007007914.1 NC_019529_p91 hypothetical protein phrog_24449 unknown function unknown function 1 59628 59951
YP_007007842.1 NC_019529_p19 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism -1 16250 16777
YP_007007850.1 NC_019529_p27 D3 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 19773 20183
YP_007007871.1 NC_019529_p48 hypothetical protein phrog_14858 unknown function unknown function 1 35313 35480
YP_007007954.1 NC_019529_p131 hypothetical protein phrog_16279 unknown function unknown function -1 78192 78314
YP_007007973.1 NC_019529_p150 hypothetical protein phrog_313 Tail assembly chaperone tail 1 95499 95909
YP_007007902.1 NC_019529_p79 hypothetical protein phrog_37374 unknown function unknown function 1 54679 55014
YP_007007860.1 NC_019529_p37 hypothetical protein phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 30230 31924
YP_007007912.1 NC_019529_p89 hypothetical protein phrog_4215 unknown function unknown function 1 59038 59409
YP_007007951.1 NC_019529_p128 hypothetical protein phrog_11691 unknown function unknown function -1 76971 77288
YP_007007911.1 NC_019529_p88 hypothetical protein phrog_19681 unknown function unknown function 1 58841 59047
YP_007007829.1 NC_019529_p6 exonuclease subunit 2 phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 2778 4652
YP_007007872.1 NC_019529_p49 hypothetical protein phrog_16554 unknown function unknown function 1 35473 35736
YP_007007838.1 NC_019529_p15 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 12228 12983
YP_007007881.1 NC_019529_p58 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism 1 40933 41337
YP_007007978.1 NC_019529_p155 tail protein phrog_31 central tail fiber J tail 1 101018 103861
YP_007007955.1 NC_019529_p132 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 79248 79718
YP_007007934.1 NC_019529_p111 hypothetical protein singleton unknown function unknown function 1 69547 69708
YP_007007853.1 NC_019529_p30 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 21694 22626
YP_007007932.1 NC_019529_p109 hypothetical protein phrog_24643 unknown function unknown function 1 68902 69183
YP_007007874.1 NC_019529_p51 hypothetical protein phrog_4586 unknown function unknown function 1 36071 36316
YP_007007855.1 NC_019529_p32 replication origin binding protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism -1 22791 25580
YP_007007904.1 NC_019529_p81 hypothetical protein phrog_27736 unknown function unknown function 1 55162 55371
YP_007007893.1 NC_019529_p70 hypothetical protein phrog_464 unknown function unknown function 1 46653 46919
YP_007007864.1 NC_019529_p41 hypothetical protein phrog_13465 unknown function unknown function 1 33295 33522
YP_007007826.1 NC_019529_p3 flap endonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 1142 2014
YP_007007900.1 NC_019529_p77 hypothetical protein phrog_25895 unknown function unknown function 1 53859 54329
YP_007007976.1 NC_019529_p153 pore-forming tail tip protein phrog_3779 tail length tape measure protein tail 1 97168 100239
YP_007007875.1 NC_019529_p52 exodeoxyribonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism 1 36303 37061
YP_007007960.1 NC_019529_p137 hypothetical protein phrog_16456 unknown function unknown function -1 83490 85427
YP_007007841.1 NC_019529_p18 NAD-dependent DNA ligase subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 15317 16093
YP_007007943.1 NC_019529_p120 hypothetical protein phrog_21801 unknown function unknown function 1 72686 72910
YP_007007915.1 NC_019529_p92 hypothetical protein phrog_18966 unknown function unknown function 1 59935 60153
YP_007007928.1 NC_019529_p105 hypothetical protein phrog_2686 unknown function unknown function 1 66571 66945
YP_007007948.1 NC_019529_p125 hypothetical protein singleton unknown function unknown function -1 75238 75378
YP_007007876.1 NC_019529_p53 hypothetical protein phrog_16144 unknown function unknown function 1 37137 37331
YP_007007862.1 NC_019529_p39 hypothetical protein phrog_18867 unknown function unknown function 1 32486 32884
YP_007007856.1 NC_019529_p33 hypothetical protein phrog_19008 unknown function unknown function -1 26246 26560
YP_007007889.1 NC_019529_p66 hypothetical protein singleton unknown function unknown function 1 44524 44829
YP_007007922.1 NC_019529_p99 hypothetical protein phrog_27900 unknown function unknown function 1 63842 64243
YP_007007882.1 NC_019529_p59 hypothetical protein phrog_26608 unknown function unknown function 1 41334 41564
YP_007007919.1 NC_019529_p96 hypothetical protein phrog_35578 unknown function unknown function 1 61985 62143
YP_007007968.1 NC_019529_p145 hypothetical protein phrog_442 head-tail adaptor connector 1 91412 91954
YP_007007885.1 NC_019529_p62 hypothetical protein phrog_1817 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 42800 43348
YP_007007878.1 NC_019529_p55 hypothetical protein phrog_13267 unknown function unknown function 1 37813 37968
YP_007007965.1 NC_019529_p142 hypothetical protein phrog_16166 unknown function unknown function 1 89109 89354
YP_007007957.1 NC_019529_p134 A1 protein phrog_1745 DNA transfer protein other 1 80288 81943
YP_007007977.1 NC_019529_p154 hypothetical protein phrog_1302 distal tail protein tail 1 100404 101021