Genomic map of Salmonella phage Sh19 (NC_019530)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019530
Definition
Salmonella phage PhiSH19, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Ackermannviridae; Cvivirinae; Kuttervirus.
DB of origin
REFSEQ
Length
157785
Host Name
Salmonella typhimurium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
166
%GC
44.68
Number of singletons
2
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007008081.1 NC_019530_p101 hypothetical protein phrog_2018 unknown function unknown function -1 85212 85583
YP_007008007.1 NC_019530_p27 hypothetical protein phrog_3707 membrane-flanked domain moron, auxiliary metabolic gene and host takeover 1 19227 19634
YP_007008008.1 NC_019530_p28 head completion protein phrog_218 head closure connector -1 19845 20465
YP_007007983.1 NC_019530_p3 hypothetical protein phrog_3805 unknown function unknown function 1 4411 4710
YP_007007995.1 NC_019530_p15 hypothetical protein phrog_335 phosphatase other 1 13309 13929
YP_007008114.1 NC_019530_p134 hypothetical protein phrog_3961 unknown function unknown function -1 115139 115480
YP_007008023.1 NC_019530_p43 RecA-like recombination protein phrog_97 UvsX-like recombinase other -1 33189 34274
YP_007008074.1 NC_019530_p94 hypothetical protein phrog_2859 unknown function unknown function -1 78508 78957
YP_007008095.1 NC_019530_p115 hypothetical protein phrog_2114 unknown function unknown function -1 97244 97972
YP_007008032.1 NC_019530_p52 DNA end protector phrog_429 DNA end protector DNA, RNA and nucleotide metabolism -1 39924 40628
YP_007008053.1 NC_019530_p73 hypothetical protein phrog_4048 unknown function unknown function -1 59112 59681
YP_007008027.1 NC_019530_p47 thymidylate synthase phrog_3676 thymidylate synthase DNA, RNA and nucleotide metabolism -1 35903 36943
YP_007008143.1 NC_019530_p163 hypothetical protein phrog_4236 unknown function unknown function 1 155661 156083
YP_007007997.1 NC_019530_p17 DexA exonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism 1 14263 14895
YP_007007987.1 NC_019530_p7 hypothetical protein phrog_4164 histone family DNA-binding DNA, RNA and nucleotide metabolism 1 6624 7133
YP_007008106.1 NC_019530_p126 tail tube protein phrog_45 tail tube tail -1 106852 107385
YP_007008050.1 NC_019530_p70 DNA primase subunit phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 56712 57776
YP_007008046.1 NC_019530_p66 Nrda phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 51403 53730
YP_007008014.1 NC_019530_p34 loader of T4-like helicase phrog_269 DNA helicase loader DNA, RNA and nucleotide metabolism -1 26134 26796
YP_007008070.1 NC_019530_p90 ImpD phrog_5426 unknown function unknown function -1 75736 76407
YP_007007994.1 NC_019530_p14 hypothetical protein phrog_839 unknown function unknown function 1 12407 12820
YP_007008133.1 NC_019530_p153 DNA polymerase phrog_262 DNA polymerase DNA, RNA and nucleotide metabolism 1 145442 148438
YP_007008093.1 NC_019530_p113 tail completion protein phrog_45 tail tube tail -1 96062 96559
YP_007008056.1 NC_019530_p76 hypothetical protein phrog_600 unknown function unknown function -1 63656 64273
YP_007008085.1 NC_019530_p105 rega translational repressor phrog_242 translation repressor other -1 89926 90390
YP_007008019.1 NC_019530_p39 hypothetical protein phrog_639 transcriptional regulator transcription regulation -1 30740 31042
YP_007008137.1 NC_019530_p157 hypothetical protein phrog_4409 guanylate kinase other 1 149946 150851
YP_007008072.1 NC_019530_p92 hypothetical protein phrog_3843 Rz-like spanin lysis -1 77417 77737
YP_007008086.1 NC_019530_p106 clamp loader for DNA polymerase phrog_225 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism -1 90420 90842
YP_007008144.1 NC_019530_p164 hypothetical protein phrog_4130 unknown function unknown function 1 156133 156513
YP_007008065.1 NC_019530_p85 ATP-dependent helicase phrog_2488 DNA helicase DNA, RNA and nucleotide metabolism -1 71921 73522
YP_007008039.1 NC_019530_p59 hypothetical protein phrog_3957 unknown function unknown function -1 44897 45421
YP_007008068.1 NC_019530_p88 superinfection exclusion protein phrog_1510 superinfection exclusion moron, auxiliary metabolic gene and host takeover -1 75137 75457
YP_007008091.1 NC_019530_p111 hypothetical protein phrog_298 exonuclease DNA, RNA and nucleotide metabolism -1 94822 95568
YP_007008077.1 NC_019530_p97 hypothetical protein phrog_2426 unknown function unknown function -1 80725 82941
YP_007008102.1 NC_019530_p122 prohead core scaffold protein phrog_237 head scaffolding protein head and packaging -1 103002 103841
YP_007008058.1 NC_019530_p78 hypothetical protein phrog_4651 unknown function unknown function -1 65310 65618
YP_007008013.1 NC_019530_p33 hypothetical protein phrog_3799 unknown function unknown function 1 24193 26133
YP_007008006.1 NC_019530_p26 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 18704 19225
YP_007007992.1 NC_019530_p12 hypothetical protein phrog_2241 unknown function unknown function 1 11812 12090
YP_007008088.1 NC_019530_p108 gp45 sliding clamp holder phrog_223 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 91914 92582
YP_007008028.1 NC_019530_p48 hypothetical protein phrog_800 terminase small subunit head and packaging -1 36943 37605
YP_007008094.1 NC_019530_p114 hypothetical protein phrog_3832 unknown function unknown function 1 96623 97243
YP_007008041.1 NC_019530_p61 tail-associated lysozyme phrog_430 baseplate hub subunit and tail lysozyme tail 1 46781 48406
YP_007008128.1 NC_019530_p148 hypothetical protein phrog_3852 unknown function unknown function 1 142437 142895
YP_007007984.1 NC_019530_p4 hypothetical protein phrog_3795 unknown function unknown function 1 4628 5098
YP_007008119.1 NC_019530_p139 haemolysin-type calcium binding protein phrog_34776 haemolysin-type calcium binding other -1 127168 130209
YP_007008083.1 NC_019530_p103 hypothetical protein phrog_2396 unknown function unknown function -1 87753 88976
YP_007008097.1 NC_019530_p117 hypothetical protein phrog_4663 unknown function unknown function -1 98636 98980
YP_007008073.1 NC_019530_p93 hypothetical protein phrog_4260 unknown function unknown function -1 77734 78423
YP_007008045.1 NC_019530_p65 Nrdb phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 50229 51332
YP_007008061.1 NC_019530_p81 sigma factor for late transcription phrog_234 late sigma transcription factor transcription regulation -1 69060 69854
YP_007008004.1 NC_019530_p24 hypothetical protein phrog_4677 unknown function unknown function 1 17973 18323
YP_007008037.1 NC_019530_p57 hypothetical protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 43785 44396
YP_007008038.1 NC_019530_p58 hypothetical protein phrog_3801 unknown function unknown function -1 44434 44988
YP_007008134.1 NC_019530_p154 hypothetical protein phrog_3748 unknown function unknown function 1 148499 148843
YP_007008002.1 NC_019530_p22 hypothetical protein phrog_547 phosphoesterase other 1 17087 17647
YP_007008122.1 NC_019530_p142 baseplate wedge subunit phrog_219 baseplate wedge subunit tail -1 132287 134080
YP_007007988.1 NC_019530_p8 hypothetical protein phrog_652 unknown function unknown function 1 7413 7898
YP_007008092.1 NC_019530_p112 uvsy repair/recombination protein phrog_231 UvsY-like recombination mediator DNA, RNA and nucleotide metabolism -1 95568 96023
YP_007008047.1 NC_019530_p67 phoH-like phosphate starvation-inducible protein phrog_170 PhoH-like phosphate starvation-inducible other -1 53764 54603
YP_007008048.1 NC_019530_p68 phage-encoded peptidoglycan binding protein phrog_1224 endolysin head and packaging -1 54711 55505
YP_007008064.1 NC_019530_p84 hypothetical protein phrog_3833 unknown function unknown function 1 71157 71924
YP_007008129.1 NC_019530_p149 hypothetical protein phrog_6044 unknown function unknown function -1 142921 143295
YP_007008049.1 NC_019530_p69 hypothetical protein phrog_3764 unknown function unknown function -1 55818 56321
YP_007008125.1 NC_019530_p145 hypothetical protein phrog_4050 unknown function unknown function 1 139963 140649
YP_007008127.1 NC_019530_p147 hypothetical protein phrog_4700 unknown function unknown function 1 141952 142401
YP_007008040.1 NC_019530_p60 baseplate hub subunit phrog_150 baseplate hub tail 1 45471 46274
YP_007008031.1 NC_019530_p51 hypothetical protein phrog_4253 unknown function unknown function -1 39116 39862
YP_007008054.1 NC_019530_p74 hypothetical protein phrog_3867 unknown function unknown function -1 59733 62462
YP_007008108.1 NC_019530_p128 tail sheath protein phrog_23 tail sheath tail -1 107933 109828
YP_007008078.1 NC_019530_p98 hypothetical protein phrog_4254 unknown function unknown function -1 83106 83465
YP_007008024.1 NC_019530_p44 hypothetical protein phrog_3839 unknown function unknown function -1 34259 34789
YP_007008111.1 NC_019530_p131 proximal tail sheath stabilization phrog_227 tail sheath stabilizer tail -1 112755 113453
YP_007008057.1 NC_019530_p77 NrdA.1 phrog_464 unknown function unknown function -1 64978 65313
YP_007008131.1 NC_019530_p151 hypothetical protein singleton unknown function unknown function -1 143883 144620
YP_007008115.1 NC_019530_p135 hypothetical protein phrog_358 unknown function unknown function -1 115765 120603
YP_007008098.1 NC_019530_p118 hypothetical protein phrog_6516 unknown function unknown function -1 99056 99493
YP_007008018.1 NC_019530_p38 hypothetical protein phrog_2319 unknown function unknown function -1 29429 30622
YP_007008096.1 NC_019530_p116 hypothetical protein phrog_289 GTP-binding domain other -1 98208 98630
YP_007008112.1 NC_019530_p132 neck protein 1 phrog_679 head closure Hc2 connector -1 113456 114097
YP_007008113.1 NC_019530_p133 neck protein 2 phrog_211 head-tail adaptor Ad2 connector -1 114400 115209
YP_007008121.1 NC_019530_p141 hypothetical protein phrog_3465 head closure Hc2 connector -1 131449 132330
YP_007008076.1 NC_019530_p96 acyl carrier protein phrog_4154 acyl carrier protein moron, auxiliary metabolic gene and host takeover -1 80355 80687
YP_007007998.1 NC_019530_p18 hypothetical protein phrog_9302 unknown function unknown function 1 15336 15632
YP_007008029.1 NC_019530_p49 hypothetical protein phrog_3905 unknown function unknown function -1 37678 38637
YP_007008107.1 NC_019530_p127 GIY-YIG endonuclease phrog_5123 homing endonuclease with GIY-YIG motif DNA, RNA and nucleotide metabolism -1 107416 107874
YP_007007999.1 NC_019530_p19 hypothetical protein phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover 1 15632 16294
YP_007008017.1 NC_019530_p37 hypothetical protein phrog_5022 unknown function unknown function -1 28767 29105
YP_007008003.1 NC_019530_p23 hypothetical protein phrog_6872 unknown function unknown function 1 17644 17976
YP_007007985.1 NC_019530_p5 hypothetical protein phrog_407 unknown function unknown function 1 5131 5523
YP_007008043.1 NC_019530_p63 hypothetical protein phrog_6103 unknown function unknown function -1 48852 49190
YP_007008104.1 NC_019530_p124 hypothetical protein phrog_3503 head scaffolding protein head and packaging -1 104564 104881
YP_007008109.1 NC_019530_p129 large terminase subunit phrog_2 terminase large subunit head and packaging -1 109881 112091
YP_007008103.1 NC_019530_p123 prohead protease phrog_207 head maturation protease head and packaging -1 103888 104556
YP_007008117.1 NC_019530_p137 tail spike protein 2 phrog_18522 tail protein tail -1 122702 124876
YP_007008042.1 NC_019530_p62 baseplate wedge protein phrog_43 baseplate wedge subunit tail 1 48471 48851
YP_007007982.1 NC_019530_p2 RIIB phrog_3803 RIIB lysis inhibitor lysis 1 2775 4358
YP_007007993.1 NC_019530_p13 hypothetical protein phrog_3362 unknown function unknown function 1 12071 12403
YP_007008140.1 NC_019530_p160 hypothetical protein phrog_5047 unknown function unknown function 1 153332 153718
YP_007008005.1 NC_019530_p25 hypothetical protein phrog_4059 unknown function unknown function 1 18387 18704
YP_007008055.1 NC_019530_p75 hypothetical protein phrog_3923 unknown function unknown function -1 63018 63656
YP_007008079.1 NC_019530_p99 hypothetical protein phrog_4435 unknown function unknown function -1 83565 84290
YP_007008044.1 NC_019530_p64 hypothetical protein phrog_3902 unknown function unknown function -1 49192 49653
YP_007008146.1 NC_019530_p166 hypothetical protein phrog_3959 unknown function unknown function 1 157325 157678
YP_007008030.1 NC_019530_p50 hypothetical protein phrog_4562 unknown function unknown function -1 38811 39098
YP_007008001.1 NC_019530_p21 hypothetical protein phrog_17979 unknown function unknown function 1 16620 17087
YP_007008123.1 NC_019530_p143 hypothetical protein phrog_3788 unknown function unknown function 1 134432 135001
YP_007008000.1 NC_019530_p20 hypothetical protein phrog_4814 unknown function unknown function 1 16297 16638
YP_007008060.1 NC_019530_p80 recombination protein subunit phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 67958 69073
YP_007008022.1 NC_019530_p42 hypothetical protein phrog_3998 unknown function unknown function -1 32882 33211
YP_007007991.1 NC_019530_p11 DNA topoisomerase II medium subunit phrog_551 DNA topoisomerase II DNA, RNA and nucleotide metabolism 1 10357 11769
YP_007008100.1 NC_019530_p120 hypothetical protein phrog_6238 unknown function unknown function -1 100845 101177
YP_007008120.1 NC_019530_p140 hypothetical protein phrog_3838 unknown function unknown function -1 130256 131446
YP_007008021.1 NC_019530_p41 DNA primase-helicase subunit phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 31451 32875
YP_007008135.1 NC_019530_p155 hypothetical protein phrog_420 unknown function unknown function 1 148776 149615
YP_007007981.1 NC_019530_p1 RIIA phrog_3661 RIIA lysis inhibitor lysis 1 1 2742
YP_007008025.1 NC_019530_p45 dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism -1 34789 35340
YP_007008010.1 NC_019530_p30 T4-like baseplate tail tube cap phrog_230 baseplate tail tube cap tail 1 21259 22227
YP_007008009.1 NC_019530_p29 homing endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism -1 20465 21205
YP_007008145.1 NC_019530_p165 hypothetical protein phrog_4168 unknown function unknown function 1 156510 156956
YP_007008101.1 NC_019530_p121 major cpasid protein phrog_138 major head protein head and packaging -1 101588 102910
YP_007008075.1 NC_019530_p95 hypothetical protein phrog_4458 unknown function unknown function -1 79122 79472
YP_007008026.1 NC_019530_p46 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other -1 35337 35906
YP_007008080.1 NC_019530_p100 hypothetical protein phrog_1934 unknown function unknown function -1 84506 84925
YP_007008105.1 NC_019530_p125 portal vertex protein of the head phrog_213 portal protein head and packaging -1 105102 106784
YP_007008116.1 NC_019530_p136 tail spike protein 1 phrog_38183 tail protein tail -1 120710 122641
YP_007008069.1 NC_019530_p89 hypothetical protein phrog_5397 unknown function unknown function -1 75447 75770
YP_007008099.1 NC_019530_p119 hypothetical protein phrog_4181 unknown function unknown function -1 99842 100282
YP_007008138.1 NC_019530_p158 hypothetical protein phrog_4163 unknown function unknown function 1 151059 151409
YP_007008016.1 NC_019530_p36 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 27281 28708
YP_007008139.1 NC_019530_p159 hypothetical protein phrog_3271 unknown function unknown function 1 151393 152634
YP_007008035.1 NC_019530_p55 late promoter transcription factor phrog_254 late promoter transcriptional regulator transcription regulation -1 43029 43331
YP_007008130.1 NC_019530_p150 hypothetical protein phrog_4687 unknown function unknown function -1 143292 143834
YP_007008132.1 NC_019530_p152 hypothetical protein phrog_2524 unknown function unknown function -1 144790 145380
YP_007007989.1 NC_019530_p9 hypothetical protein phrog_1247 MazG-like pyrophosphatase other 1 7895 8473
YP_007008015.1 NC_019530_p35 hypothetical protein singleton unknown function unknown function -1 26786 27088
YP_007008089.1 NC_019530_p109 hypothetical protein phrog_4255 unknown function unknown function 1 92922 93287
YP_007008059.1 NC_019530_p79 recombination endonuclease subunit phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 65622 67955
YP_007008066.1 NC_019530_p86 DNA binding protein phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism -1 73778 74056
YP_007008126.1 NC_019530_p146 hypothetical protein phrog_3650 unknown function unknown function 1 140719 141912
YP_007008087.1 NC_019530_p107 gp44 sliding clamp holder phrog_168 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism -1 90847 91836
YP_007007990.1 NC_019530_p10 DNA topoisomerase II phrog_543 DNA topoisomerase II large subunit DNA, RNA and nucleotide metabolism 1 8523 10436
YP_007008020.1 NC_019530_p40 hypothetical protein phrog_3733 unknown function unknown function -1 31055 31387
YP_007008051.1 NC_019530_p71 hypothetical protein phrog_631 unknown function unknown function -1 57776 58393
YP_007007996.1 NC_019530_p16 hypothetical protein phrog_5613 unknown function unknown function 1 13926 14270
YP_007008141.1 NC_019530_p161 hypothetical protein phrog_2087 unknown function unknown function 1 153715 154824
YP_007007986.1 NC_019530_p6 tail fibre phrog_215 structural protein with Ig domain head and packaging 1 5502 6311
YP_007008082.1 NC_019530_p102 hypothetical protein phrog_1735 unknown function unknown function -1 85622 87640
YP_007008124.1 NC_019530_p144 hypothetical protein phrog_1030 tail needle knob tail 1 139373 139891
YP_007008110.1 NC_019530_p130 small terminase subunit phrog_735 terminase small subunit head and packaging -1 112072 112752
YP_007008062.1 NC_019530_p82 homing endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism -1 69854 70576
YP_007008090.1 NC_019530_p110 type III restriction enzyme phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 93293 94792
YP_007008136.1 NC_019530_p156 hypothetical protein phrog_3911 unknown function unknown function 1 149650 149946
YP_007008034.1 NC_019530_p54 ssDNA binding protein phrog_224 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 41652 42683
YP_007008071.1 NC_019530_p91 hypothetical protein phrog_3828 unknown function unknown function -1 76464 77366
YP_007008084.1 NC_019530_p104 hypothetical protein phrog_2144 MazG-like pyrophosphatase other -1 89046 89996
YP_007008012.1 NC_019530_p32 hypothetical protein phrog_350 tail protein tail 1 22794 24182
YP_007008118.1 NC_019530_p138 tail spike protein 3 phrog_1819 tail spike protein tail -1 124992 127088
YP_007008036.1 NC_019530_p56 regulatory protein phrog_385 transcriptional regulator transcription regulation -1 43264 43509
YP_007008142.1 NC_019530_p162 hypothetical protein phrog_1383 virion structural protein head and packaging 1 154840 155409
YP_007008052.1 NC_019530_p72 hypothetical protein phrog_858 starvation-inducible transcriptional regulator transcription regulation -1 58457 58810
YP_007008067.1 NC_019530_p87 hypothetical protein phrog_200 lipoprotein other -1 74140 74931
YP_007008033.1 NC_019530_p53 baseplate tail tube phrog_3629 tail tube protein tail 1 40488 41624
YP_007008011.1 NC_019530_p31 baseplate wedge subunit phrog_232 baseplate wedge subunit tail 1 22240 22797
YP_007008063.1 NC_019530_p83 RNAse H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 70587 71114