Genomic map of Salinivibrio phage CW02 (NC_019540)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019540
Definition
Salinivibrio phage CW02, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
49390
Host Name
Salinivibrio costicola
Host domain
Bacteria
Is prophage?
undef
Number of proteins
70
%GC
47.67
Number of singletons
28
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007010519.1 NC_019540_p8 hypothetical protein phrog_11055 unknown function unknown function 1 3675 4247
YP_007010563.1 NC_019540_p52 DNA packaging enzyme (terminase) phrog_38 terminase large subunit head and packaging -1 36031 37638
YP_007010555.1 NC_019540_p44 hypothetical protein phrog_9082 unknown function unknown function -1 30318 30512
YP_007010564.1 NC_019540_p53 hypothetical protein phrog_8035 unknown function unknown function -1 37638 38135
YP_007010557.1 NC_019540_p46 possible head fiber singleton unknown function unknown function -1 31269 31613
YP_007010543.1 NC_019540_p32 hypothetical protein singleton unknown function unknown function 1 17265 17456
YP_007010521.1 NC_019540_p10 hypothetical protein singleton unknown function unknown function 1 5035 5514
YP_007010577.1 NC_019540_p66 hypothetical protein singleton unknown function unknown function 1 45623 46000
YP_007010530.1 NC_019540_p19 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 8136 9734
YP_007010550.1 NC_019540_p39 hypothetical protein singleton unknown function unknown function -1 21075 23129
YP_007010518.1 NC_019540_p7 hypothetical protein phrog_22041 unknown function unknown function 1 3442 3675
YP_007010517.1 NC_019540_p6 hypothetical protein phrog_22041 unknown function unknown function 1 3209 3442
YP_007010571.1 NC_019540_p60 hypothetical protein phrog_3261 unknown function unknown function 1 43636 43986
YP_007010561.1 NC_019540_p50 hypothetical protein phrog_8956 unknown function unknown function -1 34039 34287
YP_007010520.1 NC_019540_p9 amidoligase phrog_7469 amidoligase enzyme other 1 4257 5057
YP_007010516.1 NC_019540_p5 hypothetical protein phrog_3815 COOH.NH2 ligase other 1 2397 3200
YP_007010574.1 NC_019540_p63 hypothetical protein phrog_624 DNA binding protein DNA, RNA and nucleotide metabolism 1 44675 45151
YP_007010575.1 NC_019540_p64 hypothetical protein singleton unknown function unknown function 1 45162 45386
YP_007010562.1 NC_019540_p51 portal protein phrog_332 head-tail adaptor connector -1 34253 36031
YP_007010533.1 NC_019540_p22 hypothetical protein singleton unknown function unknown function 1 10704 10907
YP_007010553.1 NC_019540_p42 hypothetical protein singleton unknown function unknown function -1 27829 28125
YP_007010528.1 NC_019540_p17 hypothetical protein singleton unknown function unknown function 1 7508 7801
YP_007010558.1 NC_019540_p47 tail fiber singleton unknown function unknown function -1 31662 32114
YP_007010580.1 NC_019540_p69 hypothetical protein singleton unknown function unknown function 1 47069 47527
YP_007010544.1 NC_019540_p33 poly-A polymerase phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 17466 18041
YP_007010512.1 NC_019540_p1 hypothetical protein phrog_7871 unknown function unknown function 1 2 238
YP_007010576.1 NC_019540_p65 hypothetical protein singleton unknown function unknown function 1 45397 45618
YP_007010551.1 NC_019540_p40 tail sheath phrog_12003 internal virion protein head and packaging -1 23129 27370
YP_007010579.1 NC_019540_p68 hypothetical protein singleton unknown function unknown function 1 46633 47067
YP_007010531.1 NC_019540_p20 hypothetical protein singleton unknown function unknown function 1 9744 10007
YP_007010569.1 NC_019540_p58 hypothetical protein singleton unknown function unknown function 1 42453 43085
YP_007010547.1 NC_019540_p36 hypothetical protein phrog_4590 unknown function unknown function -1 20082 20390
YP_007010526.1 NC_019540_p15 hypothetical protein singleton unknown function unknown function 1 6919 7101
YP_007010536.1 NC_019540_p25 hypothetical protein phrog_862 unknown function unknown function 1 13037 13849
YP_007010548.1 NC_019540_p37 hypothetical protein singleton unknown function unknown function -1 20383 20739
YP_007010527.1 NC_019540_p16 AIG-2 protein phrog_2520 gamma-glutamyl cyclotransferase moron, auxiliary metabolic gene and host takeover 1 7141 7521
YP_007010537.1 NC_019540_p26 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14027 14674
YP_007010515.1 NC_019540_p4 hypothetical protein singleton unknown function unknown function 1 2206 2400
YP_007010552.1 NC_019540_p41 hypothetical protein singleton unknown function unknown function -1 27383 27844
YP_007010540.1 NC_019540_p29 hypothetical protein phrog_10946 unknown function unknown function 1 15610 15999
YP_007010565.1 NC_019540_p54 hypothetical protein singleton unknown function unknown function -1 38390 40300
YP_007010549.1 NC_019540_p38 holin protein phrog_1804 Rz-like spanin lysis -1 20741 21175
YP_007010559.1 NC_019540_p48 major capsid protein phrog_267 major head protein head and packaging -1 32127 33065
YP_007010546.1 NC_019540_p35 tail fiber singleton unknown function unknown function -1 18252 20078
YP_007010522.1 NC_019540_p11 hypothetical protein singleton unknown function unknown function 1 5511 5726
YP_007010554.1 NC_019540_p43 tail appendage phrog_8094 tail appendage tail -1 28118 30343
YP_007010570.1 NC_019540_p59 hypothetical protein singleton unknown function unknown function 1 43413 43643
YP_007010532.1 NC_019540_p21 RNA polymerase sigma factor phrog_1740 RNA polymerase sigma factor transcription regulation 1 10226 10711
YP_007010513.1 NC_019540_p2 amidotransferase phrog_7218 glutamine amidotransferase moron, auxiliary metabolic gene and host takeover 1 235 882
YP_007010514.1 NC_019540_p3 amidotransferase phrog_18128 aminotransferase other 1 884 2197
YP_007010523.1 NC_019540_p12 ATP-grasp protein phrog_2599 ribosomal protein S6 glutaminyl transferase moron, auxiliary metabolic gene and host takeover 1 5726 6484
YP_007010529.1 NC_019540_p18 hypothetical protein singleton unknown function unknown function 1 7801 8049
YP_007010567.1 NC_019540_p56 hypothetical protein phrog_1356 holin lysis -1 40875 41081
YP_007010538.1 NC_019540_p27 hypothetical protein phrog_2241 unknown function unknown function 1 14735 14959
YP_007010578.1 NC_019540_p67 hydrolase phrog_938 endolysin lysis 1 46172 46537
YP_007010539.1 NC_019540_p28 hypothetical protein phrog_17365 unknown function unknown function 1 15257 15610
YP_007010535.1 NC_019540_p24 hypothetical protein phrog_1402 unknown function unknown function 1 12818 13027
YP_007010545.1 NC_019540_p34 hypothetical protein singleton unknown function unknown function 1 18034 18222
YP_007010568.1 NC_019540_p57 hypothetical protein singleton unknown function unknown function -1 41068 41361
YP_007010534.1 NC_019540_p23 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 10919 12808
YP_007010572.1 NC_019540_p61 hypothetical protein singleton unknown function unknown function 1 44291 44500
YP_007010573.1 NC_019540_p62 hypothetical protein singleton unknown function unknown function 1 44502 44678
YP_007010566.1 NC_019540_p55 hypothetical protein phrog_18671 unknown function unknown function -1 40300 40875
YP_007010541.1 NC_019540_p30 3'-5' exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 16001 16771
YP_007010560.1 NC_019540_p49 scaffold protein phrog_7931 unknown function unknown function -1 33081 33875
YP_007010542.1 NC_019540_p31 transcriptional repressor phrog_715 MazG-like pyrophosphatase other 1 16780 17127
YP_007010556.1 NC_019540_p45 hypothetical protein phrog_7592 tail protein tail -1 30512 31267
YP_007010524.1 NC_019540_p13 hypothetical protein phrog_7871 unknown function unknown function 1 6471 6692
YP_007010525.1 NC_019540_p14 hypothetical protein phrog_7871 unknown function unknown function 1 6689 6922
YP_007010581.1 NC_019540_p70 hypothetical protein phrog_34254 unknown function unknown function 1 47879 49390