Genomic map of Pectobacterium phage PP1 (NC_019542)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019542
Definition
Pectobacterium phage PP1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Molineuxvirinae; Axomammavirus; Pectobacterium virus PP1.
DB of origin
REFSEQ
Length
44400
Host Name
Pectobacterium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
49.73
Number of singletons
7
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007010679.1 NC_019542_p36 internal virion protein 2 phrog_805 internal virion protein head and packaging 1 29402 30100
YP_007010644.1 NC_019542_p1 hypothetical protein singleton unknown function unknown function 1 819 995
YP_007010686.1 NC_019542_p43 hypothetical protein phrog_2725 acetyl-CoA acetyltransferase other 1 40449 40739
YP_007010654.1 NC_019542_p11 DNA primase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 7595 9583
YP_007010668.1 NC_019542_p25 hypothetical protein phrog_4317 unknown function unknown function 1 19782 20417
YP_007010655.1 NC_019542_p12 hypothetical protein phrog_6703 unknown function unknown function 1 9657 10400
YP_007010673.1 NC_019542_p30 hypothetical protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 22204 22467
YP_007010650.1 NC_019542_p7 hypothetical protein singleton unknown function unknown function 1 2723 2956
YP_007010661.1 NC_019542_p18 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 14390 14932
YP_007010652.1 NC_019542_p9 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 4252 6831
YP_007010681.1 NC_019542_p38 internal virion protein 1 phrog_342 internal virion protein with endolysin domain head and packaging 1 33154 36942
YP_007010678.1 NC_019542_p35 tail tubular protein B phrog_457 tail protein tail 1 27009 29399
YP_007010670.1 NC_019542_p27 hypothetical protein phrog_5860 unknown function unknown function 1 21402 21590
YP_007010687.1 NC_019542_p44 hypothetical protein phrog_2725 acetyl-CoA acetyltransferase other 1 40749 41027
YP_007010690.1 NC_019542_p47 SGNH hydrolase domain-containing protein phrog_8460 tail fiber protein tail 1 42133 43935
YP_007010658.1 NC_019542_p15 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11159 13672
YP_007010669.1 NC_019542_p26 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 20417 21391
YP_007010647.1 NC_019542_p4 hypothetical protein phrog_6403 unknown function unknown function 1 1661 1885
YP_007010662.1 NC_019542_p19 hypothetical protein phrog_7450 polysaccharide chain length determinant protein moron, auxiliary metabolic gene and host takeover 1 15020 15397
YP_007010689.1 NC_019542_p46 peptidase M15A domain-containing protein phrog_894 endolysin lysis 1 41461 41808
YP_007010675.1 NC_019542_p32 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 23990 24898
YP_007010677.1 NC_019542_p34 tail tubular protein A phrog_446 tail protein tail 1 26272 27009
YP_007010691.1 NC_019542_p48 hypothetical protein singleton unknown function unknown function 1 44017 44226
YP_007010651.1 NC_019542_p8 hypothetical protein phrog_4571 unknown function unknown function 1 3203 4132
YP_007010664.1 NC_019542_p21 hypothetical protein phrog_5791 unknown function unknown function 1 16391 16612
YP_007010663.1 NC_019542_p20 hypothetical protein phrog_862 unknown function unknown function 1 15583 16389
YP_007010660.1 NC_019542_p17 hypothetical protein singleton unknown function unknown function 1 14148 14390
YP_007010682.1 NC_019542_p39 tail fiber protein phrog_2710 tail fiber protein tail 1 36942 37910
YP_007010665.1 NC_019542_p22 hypothetical protein phrog_4429 unknown function unknown function 1 16944 17315
YP_007010680.1 NC_019542_p37 lysozyme domain-containing protein phrog_4290 lysozyme domain-containing protein lysis 1 30110 33085
YP_007010653.1 NC_019542_p10 hypothetical protein singleton unknown function unknown function 1 7249 7479
YP_007010685.1 NC_019542_p42 terminase large subunit phrog_38 terminase large subunit head and packaging 1 38385 40283
YP_007010648.1 NC_019542_p5 hypothetical protein phrog_6314 unknown function unknown function 1 1887 2081
YP_007010646.1 NC_019542_p3 hypothetical protein phrog_4445 unknown function unknown function 1 1437 1661
YP_007010659.1 NC_019542_p16 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 13686 14147
YP_007010688.1 NC_019542_p45 hypothetical protein phrog_2725 acetyl-CoA acetyltransferase other 1 41040 41321
YP_007010667.1 NC_019542_p24 hypothetical protein phrog_221 metallo-phosphoesterase other 1 18665 19711
YP_007010666.1 NC_019542_p23 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 17649 18680
YP_007010672.1 NC_019542_p29 acyl-CoA N-acyltransferase domain-containing protein phrog_1249 acetyltransferase other 1 21732 22217
YP_007010671.1 NC_019542_p28 hypothetical protein phrog_6507 unknown function unknown function 1 21565 21735
YP_007010649.1 NC_019542_p6 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 2281 2697
YP_007010676.1 NC_019542_p33 major capsid protein phrog_267 major head protein head and packaging 1 25002 26219
YP_007010674.1 NC_019542_p31 head-tail connector phrog_449 head-tail adaptor connector 1 22464 23990
YP_007010657.1 NC_019542_p14 hypothetical protein phrog_5754 unknown function unknown function 1 10650 10847
YP_007010645.1 NC_019542_p2 hypothetical protein singleton unknown function unknown function 1 1091 1330
YP_007010684.1 NC_019542_p41 terminase small subunit phrog_891 terminase small subunit head and packaging 1 38086 38385
YP_007010683.1 NC_019542_p40 holin phrog_920 holin lysis 1 37907 38089
YP_007010656.1 NC_019542_p13 hypothetical protein singleton unknown function unknown function 1 10400 10657