| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019542 |
Definition |
Pectobacterium phage PP1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Molineuxvirinae; Axomammavirus; Pectobacterium virus PP1. |
DB of origin |
REFSEQ |
Length |
44400 |
Host Name |
Pectobacterium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
49.73 |
Number of singletons |
7 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007010679.1 | NC_019542_p36 | internal virion protein 2 | phrog_805 | internal virion protein | head and packaging | 1 | 29402 | 30100 |
| YP_007010644.1 | NC_019542_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 819 | 995 |
| YP_007010686.1 | NC_019542_p43 | hypothetical protein | phrog_2725 | acetyl-CoA acetyltransferase | other | 1 | 40449 | 40739 |
| YP_007010654.1 | NC_019542_p11 | DNA primase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 7595 | 9583 |
| YP_007010668.1 | NC_019542_p25 | hypothetical protein | phrog_4317 | unknown function | unknown function | 1 | 19782 | 20417 |
| YP_007010655.1 | NC_019542_p12 | hypothetical protein | phrog_6703 | unknown function | unknown function | 1 | 9657 | 10400 |
| YP_007010673.1 | NC_019542_p30 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 22204 | 22467 |
| YP_007010650.1 | NC_019542_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2723 | 2956 |
| YP_007010661.1 | NC_019542_p18 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 14390 | 14932 |
| YP_007010652.1 | NC_019542_p9 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4252 | 6831 |
| YP_007010681.1 | NC_019542_p38 | internal virion protein 1 | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 33154 | 36942 |
| YP_007010678.1 | NC_019542_p35 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 27009 | 29399 |
| YP_007010670.1 | NC_019542_p27 | hypothetical protein | phrog_5860 | unknown function | unknown function | 1 | 21402 | 21590 |
| YP_007010687.1 | NC_019542_p44 | hypothetical protein | phrog_2725 | acetyl-CoA acetyltransferase | other | 1 | 40749 | 41027 |
| YP_007010690.1 | NC_019542_p47 | SGNH hydrolase domain-containing protein | phrog_8460 | tail fiber protein | tail | 1 | 42133 | 43935 |
| YP_007010658.1 | NC_019542_p15 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11159 | 13672 |
| YP_007010669.1 | NC_019542_p26 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 20417 | 21391 |
| YP_007010647.1 | NC_019542_p4 | hypothetical protein | phrog_6403 | unknown function | unknown function | 1 | 1661 | 1885 |
| YP_007010662.1 | NC_019542_p19 | hypothetical protein | phrog_7450 | polysaccharide chain length determinant protein | moron, auxiliary metabolic gene and host takeover | 1 | 15020 | 15397 |
| YP_007010689.1 | NC_019542_p46 | peptidase M15A domain-containing protein | phrog_894 | endolysin | lysis | 1 | 41461 | 41808 |
| YP_007010675.1 | NC_019542_p32 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23990 | 24898 |
| YP_007010677.1 | NC_019542_p34 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 26272 | 27009 |
| YP_007010691.1 | NC_019542_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44017 | 44226 |
| YP_007010651.1 | NC_019542_p8 | hypothetical protein | phrog_4571 | unknown function | unknown function | 1 | 3203 | 4132 |
| YP_007010664.1 | NC_019542_p21 | hypothetical protein | phrog_5791 | unknown function | unknown function | 1 | 16391 | 16612 |
| YP_007010663.1 | NC_019542_p20 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 15583 | 16389 |
| YP_007010660.1 | NC_019542_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14148 | 14390 |
| YP_007010682.1 | NC_019542_p39 | tail fiber protein | phrog_2710 | tail fiber protein | tail | 1 | 36942 | 37910 |
| YP_007010665.1 | NC_019542_p22 | hypothetical protein | phrog_4429 | unknown function | unknown function | 1 | 16944 | 17315 |
| YP_007010680.1 | NC_019542_p37 | lysozyme domain-containing protein | phrog_4290 | lysozyme domain-containing protein | lysis | 1 | 30110 | 33085 |
| YP_007010653.1 | NC_019542_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7249 | 7479 |
| YP_007010685.1 | NC_019542_p42 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 38385 | 40283 |
| YP_007010648.1 | NC_019542_p5 | hypothetical protein | phrog_6314 | unknown function | unknown function | 1 | 1887 | 2081 |
| YP_007010646.1 | NC_019542_p3 | hypothetical protein | phrog_4445 | unknown function | unknown function | 1 | 1437 | 1661 |
| YP_007010659.1 | NC_019542_p16 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13686 | 14147 |
| YP_007010688.1 | NC_019542_p45 | hypothetical protein | phrog_2725 | acetyl-CoA acetyltransferase | other | 1 | 41040 | 41321 |
| YP_007010667.1 | NC_019542_p24 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 18665 | 19711 |
| YP_007010666.1 | NC_019542_p23 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 17649 | 18680 |
| YP_007010672.1 | NC_019542_p29 | acyl-CoA N-acyltransferase domain-containing protein | phrog_1249 | acetyltransferase | other | 1 | 21732 | 22217 |
| YP_007010671.1 | NC_019542_p28 | hypothetical protein | phrog_6507 | unknown function | unknown function | 1 | 21565 | 21735 |
| YP_007010649.1 | NC_019542_p6 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 2281 | 2697 |
| YP_007010676.1 | NC_019542_p33 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 25002 | 26219 |
| YP_007010674.1 | NC_019542_p31 | head-tail connector | phrog_449 | head-tail adaptor | connector | 1 | 22464 | 23990 |
| YP_007010657.1 | NC_019542_p14 | hypothetical protein | phrog_5754 | unknown function | unknown function | 1 | 10650 | 10847 |
| YP_007010645.1 | NC_019542_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1091 | 1330 |
| YP_007010684.1 | NC_019542_p41 | terminase small subunit | phrog_891 | terminase small subunit | head and packaging | 1 | 38086 | 38385 |
| YP_007010683.1 | NC_019542_p40 | holin | phrog_920 | holin | lysis | 1 | 37907 | 38089 |
| YP_007010656.1 | NC_019542_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10400 | 10657 |