| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019544 |
Definition |
Deep-sea thermophilic phage D6E, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
49335 |
Host Name |
Geobacillus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
45.99 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007010956.1 | NC_019544_p35 | DnaB-like helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 34770 | 36065 |
| YP_007010925.1 | NC_019544_p4 | scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 3816 | 4520 |
| YP_007010937.1 | NC_019544_p16 | baseplate protein | phrog_6 | baseplate wedge subunit | tail | 1 | 15804 | 16979 |
| YP_007010964.1 | NC_019544_p43 | hypothetical protein | phrog_33962 | unknown function | unknown function | 1 | 41992 | 42171 |
| YP_007010959.1 | NC_019544_p38 | hypothetical protein | phrog_14865 | unknown function | unknown function | 1 | 38251 | 38388 |
| YP_007010948.1 | NC_019544_p27 | Cro-repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29346 | 29549 |
| YP_007010922.1 | NC_019544_p1 | small subunit terminase | phrog_2606 | terminase small subunit | head and packaging | 1 | 1 | 900 |
| YP_007010935.1 | NC_019544_p14 | hypothetical protein | phrog_120 | baseplate wedge subunit | tail | 1 | 14567 | 14920 |
| YP_007010945.1 | NC_019544_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26655 | 26909 |
| YP_007010934.1 | NC_019544_p13 | hypothetical protein | phrog_196 | baseplate hub | tail | 1 | 13370 | 14191 |
| YP_007010926.1 | NC_019544_p5 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 4535 | 5404 |
| YP_007010955.1 | NC_019544_p34 | replication protein | phrog_6251 | replisome organizer DnaA-like | DNA, RNA and nucleotide metabolism | 1 | 33946 | 34761 |
| YP_007010968.1 | NC_019544_p47 | hypothetical protein | phrog_15234 | unknown function | unknown function | 1 | 44999 | 45409 |
| YP_007010928.1 | NC_019544_p7 | hypothetical protein | phrog_222 | tail completion or Neck1 protein | connector | 1 | 6809 | 7315 |
| YP_007010957.1 | NC_019544_p36 | HNH endonuclease | phrog_22514 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36403 | 36837 |
| YP_007010942.1 | NC_019544_p21 | structure protein | phrog_806 | unknown function | unknown function | 1 | 21584 | 22162 |
| YP_007010923.1 | NC_019544_p2 | large subunit terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 887 | 2170 |
| YP_007010927.1 | NC_019544_p6 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 5605 | 6510 |
| YP_007010949.1 | NC_019544_p28 | hypothetical protein | phrog_28386 | unknown function | unknown function | 1 | 29721 | 29900 |
| YP_007010954.1 | NC_019544_p33 | hypothetical protein | phrog_13255 | unknown function | unknown function | 1 | 33678 | 33893 |
| YP_007010951.1 | NC_019544_p30 | hypothetical protein | phrog_4331 | unknown function | unknown function | 1 | 32002 | 32199 |
| YP_007010936.1 | NC_019544_p15 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 15025 | 15747 |
| YP_007010930.1 | NC_019544_p9 | phage structure protein | phrog_280 | virion structural protein | head and packaging | 1 | 9259 | 9663 |
| YP_007010970.1 | NC_019544_p49 | RinA transcriptional activator-like protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 46247 | 46678 |
| YP_007010963.1 | NC_019544_p42 | hypothetical protein | phrog_12193 | unknown function | unknown function | 1 | 41255 | 41974 |
| YP_007010962.1 | NC_019544_p41 | dUTPase | phrog_173 | nucleoside triphosphate pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 40412 | 40921 |
| YP_007010933.1 | NC_019544_p12 | hypothetical protein | phrog_1264 | unknown function | unknown function | 1 | 13063 | 13380 |
| YP_007010943.1 | NC_019544_p22 | hypothetical protein | phrog_691 | partition protein | DNA, RNA and nucleotide metabolism | 1 | 22587 | 23423 |
| YP_007010960.1 | NC_019544_p39 | hypothetical protein | phrog_3458 | unknown function | unknown function | 1 | 38487 | 38699 |
| YP_007010950.1 | NC_019544_p29 | hypothetical protein | phrog_6048 | unknown function | unknown function | 1 | 31242 | 31532 |
| YP_007010965.1 | NC_019544_p44 | sensor protein | phrog_98 | unknown function | unknown function | 1 | 42376 | 42807 |
| YP_007010939.1 | NC_019544_p18 | tail fiber protein | phrog_2126 | tail fiber protein | tail | 1 | 17630 | 18661 |
| YP_007010952.1 | NC_019544_p31 | gp157-like protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 32278 | 32757 |
| YP_007010940.1 | NC_019544_p19 | holin | phrog_1129 | holin | lysis | 1 | 20539 | 20802 |
| YP_007010966.1 | NC_019544_p45 | group-specific protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 43233 | 43535 |
| YP_007010946.1 | NC_019544_p25 | recombinase | phrog_95 | integrase | integration and excision | -1 | 27066 | 28508 |
| YP_007010932.1 | NC_019544_p11 | hypothetical protein | phrog_817 | tail fiber protein | tail | 1 | 12494 | 12961 |
| YP_007010947.1 | NC_019544_p26 | transcriptional regulator | phrog_4 | transcriptional repressor | transcription regulation | -1 | 28568 | 29188 |
| YP_007010924.1 | NC_019544_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2466 | 3734 |
| YP_007010944.1 | NC_019544_p23 | lipid A export ATP-binding/permease protein MsbA | phrog_5156 | unknown function | unknown function | 1 | 24473 | 26731 |
| YP_007010969.1 | NC_019544_p48 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 45437 | 46231 |
| YP_007010941.1 | NC_019544_p20 | lysin | phrog_435 | endolysin | lysis | 1 | 20802 | 21485 |
| YP_007010931.1 | NC_019544_p10 | tail tape measure protein | singleton | unknown function | unknown function | 1 | 10584 | 12494 |
| YP_007010967.1 | NC_019544_p46 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 44296 | 44529 |
| YP_007010929.1 | NC_019544_p8 | hypothetical protein | phrog_205 | tail sheath | tail | 1 | 8197 | 9246 |
| YP_007010938.1 | NC_019544_p17 | hypothetical protein | phrog_1160 | baseplate protein | tail | 1 | 16976 | 17617 |
| YP_007010953.1 | NC_019544_p32 | hypothetical protein | phrog_10048 | unknown function | unknown function | 1 | 32754 | 33551 |
| YP_007010961.1 | NC_019544_p40 | hypothetical protein | phrog_38385 | unknown function | unknown function | 1 | 39359 | 39637 |
| YP_007010958.1 | NC_019544_p37 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 36902 | 37396 |