Genomic map of Deep-sea thermophilic phage D6E (NC_019544)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019544
Definition
Deep-sea thermophilic phage D6E, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
49335
Host Name
Geobacillus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
45.99
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007010956.1 NC_019544_p35 DnaB-like helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 34770 36065
YP_007010925.1 NC_019544_p4 scaffold protein phrog_172 head scaffolding protein head and packaging 1 3816 4520
YP_007010937.1 NC_019544_p16 baseplate protein phrog_6 baseplate wedge subunit tail 1 15804 16979
YP_007010964.1 NC_019544_p43 hypothetical protein phrog_33962 unknown function unknown function 1 41992 42171
YP_007010959.1 NC_019544_p38 hypothetical protein phrog_14865 unknown function unknown function 1 38251 38388
YP_007010948.1 NC_019544_p27 Cro-repressor phrog_3 transcriptional repressor transcription regulation 1 29346 29549
YP_007010922.1 NC_019544_p1 small subunit terminase phrog_2606 terminase small subunit head and packaging 1 1 900
YP_007010935.1 NC_019544_p14 hypothetical protein phrog_120 baseplate wedge subunit tail 1 14567 14920
YP_007010945.1 NC_019544_p24 hypothetical protein singleton unknown function unknown function 1 26655 26909
YP_007010934.1 NC_019544_p13 hypothetical protein phrog_196 baseplate hub tail 1 13370 14191
YP_007010926.1 NC_019544_p5 capsid protein phrog_267 major head protein head and packaging 1 4535 5404
YP_007010955.1 NC_019544_p34 replication protein phrog_6251 replisome organizer DnaA-like DNA, RNA and nucleotide metabolism 1 33946 34761
YP_007010968.1 NC_019544_p47 hypothetical protein phrog_15234 unknown function unknown function 1 44999 45409
YP_007010928.1 NC_019544_p7 hypothetical protein phrog_222 tail completion or Neck1 protein connector 1 6809 7315
YP_007010957.1 NC_019544_p36 HNH endonuclease phrog_22514 HNH endonuclease DNA, RNA and nucleotide metabolism 1 36403 36837
YP_007010942.1 NC_019544_p21 structure protein phrog_806 unknown function unknown function 1 21584 22162
YP_007010923.1 NC_019544_p2 large subunit terminase phrog_2 terminase large subunit head and packaging 1 887 2170
YP_007010927.1 NC_019544_p6 minor head protein phrog_115 minor head protein head and packaging 1 5605 6510
YP_007010949.1 NC_019544_p28 hypothetical protein phrog_28386 unknown function unknown function 1 29721 29900
YP_007010954.1 NC_019544_p33 hypothetical protein phrog_13255 unknown function unknown function 1 33678 33893
YP_007010951.1 NC_019544_p30 hypothetical protein phrog_4331 unknown function unknown function 1 32002 32199
YP_007010936.1 NC_019544_p15 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 15025 15747
YP_007010930.1 NC_019544_p9 phage structure protein phrog_280 virion structural protein head and packaging 1 9259 9663
YP_007010970.1 NC_019544_p49 RinA transcriptional activator-like protein phrog_36 transcriptional regulator transcription regulation 1 46247 46678
YP_007010963.1 NC_019544_p42 hypothetical protein phrog_12193 unknown function unknown function 1 41255 41974
YP_007010962.1 NC_019544_p41 dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 40412 40921
YP_007010933.1 NC_019544_p12 hypothetical protein phrog_1264 unknown function unknown function 1 13063 13380
YP_007010943.1 NC_019544_p22 hypothetical protein phrog_691 partition protein DNA, RNA and nucleotide metabolism 1 22587 23423
YP_007010960.1 NC_019544_p39 hypothetical protein phrog_3458 unknown function unknown function 1 38487 38699
YP_007010950.1 NC_019544_p29 hypothetical protein phrog_6048 unknown function unknown function 1 31242 31532
YP_007010965.1 NC_019544_p44 sensor protein phrog_98 unknown function unknown function 1 42376 42807
YP_007010939.1 NC_019544_p18 tail fiber protein phrog_2126 tail fiber protein tail 1 17630 18661
YP_007010952.1 NC_019544_p31 gp157-like protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 32278 32757
YP_007010940.1 NC_019544_p19 holin phrog_1129 holin lysis 1 20539 20802
YP_007010966.1 NC_019544_p45 group-specific protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 43233 43535
YP_007010946.1 NC_019544_p25 recombinase phrog_95 integrase integration and excision -1 27066 28508
YP_007010932.1 NC_019544_p11 hypothetical protein phrog_817 tail fiber protein tail 1 12494 12961
YP_007010947.1 NC_019544_p26 transcriptional regulator phrog_4 transcriptional repressor transcription regulation -1 28568 29188
YP_007010924.1 NC_019544_p3 portal protein phrog_64 portal protein head and packaging 1 2466 3734
YP_007010944.1 NC_019544_p23 lipid A export ATP-binding/permease protein MsbA phrog_5156 unknown function unknown function 1 24473 26731
YP_007010969.1 NC_019544_p48 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 45437 46231
YP_007010941.1 NC_019544_p20 lysin phrog_435 endolysin lysis 1 20802 21485
YP_007010931.1 NC_019544_p10 tail tape measure protein singleton unknown function unknown function 1 10584 12494
YP_007010967.1 NC_019544_p46 hypothetical protein phrog_236 nucleotide kinase other 1 44296 44529
YP_007010929.1 NC_019544_p8 hypothetical protein phrog_205 tail sheath tail 1 8197 9246
YP_007010938.1 NC_019544_p17 hypothetical protein phrog_1160 baseplate protein tail 1 16976 17617
YP_007010953.1 NC_019544_p32 hypothetical protein phrog_10048 unknown function unknown function 1 32754 33551
YP_007010961.1 NC_019544_p40 hypothetical protein phrog_38385 unknown function unknown function 1 39359 39637
YP_007010958.1 NC_019544_p37 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 36902 37396