Genomic map of Salmonella phage SPN3UB (NC_019545)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019545
Definition
Salmonella phage SPN3UB, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
47355
Host Name
Salmonella typhimurium
Host domain
Bacteria
Is prophage?
undef
Number of proteins
71
%GC
49.61
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007011026.1 NC_019545_p56 hypothetical protein phrog_1965 unknown function unknown function 1 39970 40602
YP_007011020.1 NC_019545_p50 PrpO phrog_678 replication initiation O-like DNA, RNA and nucleotide metabolism 1 35674 36588
YP_007011039.1 NC_019545_p69 Rz1 phrog_3198 Rz-like spanin lysis 1 45918 46124
YP_007010981.1 NC_019545_p11 hypothetical protein phrog_797 unknown function unknown function 1 7781 8143
YP_007011036.1 NC_019545_p66 hypothetical protein phrog_1350 holin lysis 1 44441 44755
YP_007010980.1 NC_019545_p10 hypothetical protein phrog_1261 unknown function unknown function 1 7609 7788
YP_007010975.1 NC_019545_p5 hypothetical protein phrog_760 unknown function unknown function 1 4149 5411
YP_007010989.1 NC_019545_p19 Arc-like DNA binding domain protein phrog_7906 Arc-like transcriptional regulator transcription regulation -1 12049 12375
YP_007011034.1 NC_019545_p64 antitermination protein Q phrog_127 anti-termination protein Q-like transcription regulation 1 43250 44047
YP_007010985.1 NC_019545_p15 hypothetical protein phrog_791 unknown function unknown function 1 9854 10507
YP_007010986.1 NC_019545_p16 hypothetical protein phrog_1136 unknown function unknown function 1 10729 11457
YP_007010971.1 NC_019545_p1 terminase small subunit phrog_51 terminase small subunit head and packaging 1 1 432
YP_007010987.1 NC_019545_p17 hypothetical protein phrog_12509 unknown function unknown function -1 11479 11850
YP_007011025.1 NC_019545_p55 Eaa protein phrog_60 unknown function unknown function 1 38796 39818
YP_007010997.1 NC_019545_p27 hypothetical protein phrog_19981 unknown function unknown function 1 15735 16049
YP_007010973.1 NC_019545_p3 hypothetical protein phrog_146 portal protein head and packaging 1 1868 3220
YP_007011007.1 NC_019545_p37 host specificity protein J phrog_31 central tail fiber J tail 1 21678 24857
YP_007010991.1 NC_019545_p21 hypothetical protein phrog_245 anti-repressor Ant transcription regulation 1 12649 13371
YP_007011029.1 NC_019545_p59 hypothetical protein phrog_1813 unknown function unknown function 1 41386 41625
YP_007010976.1 NC_019545_p6 hypothetical protein phrog_766 head decoration head and packaging 1 5424 5873
YP_007011001.1 NC_019545_p31 minor tail protein M phrog_14 minor tail protein tail 1 18861 19208
YP_007011013.1 NC_019545_p43 recombinase RecT family protein phrog_561 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 29307 30416
YP_007010992.1 NC_019545_p22 antirepressor family protein phrog_4936 transcriptional regulator transcription regulation 1 13451 14239
YP_007011016.1 NC_019545_p46 hypothetical protein phrog_1520 unknown function unknown function -1 33853 34011
YP_007010996.1 NC_019545_p26 hypothetical protein phrog_21923 unknown function unknown function 1 15386 15721
YP_007011004.1 NC_019545_p34 minor tail protein L phrog_18 minor tail protein tail 1 19775 20479
YP_007011002.1 NC_019545_p32 hypothetical protein phrog_9873 unknown function unknown function 1 19219 19425
YP_007011022.1 NC_019545_p52 DNA-binding protein phrog_2391 DNA binding protein DNA, RNA and nucleotide metabolism 1 37351 37698
YP_007011031.1 NC_019545_p61 hypothetical protein phrog_1212 unknown function unknown function 1 42273 42473
YP_007010990.1 NC_019545_p20 hypothetical protein phrog_228 Arc-like repressor transcription regulation 1 12486 12659
YP_007011006.1 NC_019545_p36 tail assembly protein I phrog_32 tail assembly protein tail 1 21141 21668
YP_007010974.1 NC_019545_p4 hypothetical protein phrog_758 head morphogenesis head and packaging 1 3174 4133
YP_007010979.1 NC_019545_p9 hypothetical protein phrog_786 unknown function unknown function 1 7208 7609
YP_007010977.1 NC_019545_p7 hypothetical protein phrog_771 virion structural protein head and packaging 1 6122 6967
YP_007011018.1 NC_019545_p48 Cro phrog_35 transcriptional repressor transcription regulation 1 34944 35180
YP_007011041.1 NC_019545_p71 KilA-N domain protein phrog_129 transcriptional regulator transcription regulation 1 46378 46899
YP_007010994.1 NC_019545_p24 hypothetical protein phrog_4293 unknown function unknown function 1 14646 15020
YP_007011010.1 NC_019545_p40 integrase phrog_1 integrase integration and excision 1 27493 28722
YP_007010983.1 NC_019545_p13 hypothetical protein phrog_782 unknown function unknown function 1 8665 9051
YP_007011003.1 NC_019545_p33 hypothetical protein phrog_6806 unknown function unknown function -1 19394 19609
YP_007011019.1 NC_019545_p49 CII phrog_725 CII-like regulator transcription regulation 1 35200 35520
YP_007010993.1 NC_019545_p23 hypothetical protein phrog_1886 unknown function unknown function 1 14239 14511
YP_007011000.1 NC_019545_p30 tape measure protein phrog_1538 tail length tape measure protein tail 1 16690 18858
YP_007011008.1 NC_019545_p38 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover 1 24866 25825
YP_007011037.1 NC_019545_p67 endolysin phrog_7 endolysin lysis 1 44758 45300
YP_007010984.1 NC_019545_p14 hypothetical protein phrog_853 major tail protein tail 1 9069 9809
YP_007011032.1 NC_019545_p62 NinG phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 42476 43117
YP_007011024.1 NC_019545_p54 hypothetical protein phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 38030 38785
YP_007011023.1 NC_019545_p53 hypothetical protein phrog_1667 unknown function unknown function 1 37695 38030
YP_007011009.1 NC_019545_p39 hypothetical protein phrog_1980 tail fiber protein tail 1 25836 26972
YP_007011030.1 NC_019545_p60 hypothetical protein phrog_319 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 41665 42267
YP_007011012.1 NC_019545_p42 hypothetical protein phrog_1852 unknown function unknown function -1 29025 29264
YP_007011033.1 NC_019545_p63 hypothetical protein phrog_2705 unknown function unknown function 1 43114 43260
YP_007011015.1 NC_019545_p45 hypothetical protein phrog_2434 unknown function unknown function -1 33481 33768
YP_007011011.1 NC_019545_p41 excisionase-like protein phrog_5914 excisionase integration and excision -1 28700 28984
YP_007011028.1 NC_019545_p58 DinI phrog_189 RecA filament binding protein DinI DNA, RNA and nucleotide metabolism 1 41091 41330
YP_007010999.1 NC_019545_p29 hypothetical protein phrog_6806 unknown function unknown function -1 16318 16515
YP_007011021.1 NC_019545_p51 DNA replication protein DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 36591 37340
YP_007010988.1 NC_019545_p18 hypothetical protein phrog_14502 unknown function unknown function 1 11771 12028
YP_007010998.1 NC_019545_p28 hypothetical protein singleton unknown function unknown function 1 16122 16334
YP_007010995.1 NC_019545_p25 hypothetical protein phrog_6324 unknown function unknown function 1 15013 15315
YP_007010982.1 NC_019545_p12 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 8231 8668
YP_007011035.1 NC_019545_p65 hypothetical protein singleton unknown function unknown function 1 44219 44386
YP_007011038.1 NC_019545_p68 endopeptidase Rz phrog_13 Rz-like spanin lysis 1 45698 46165
YP_007011014.1 NC_019545_p44 RecE phrog_607 exonuclease VII DNA, RNA and nucleotide metabolism -1 30427 33354
YP_007011017.1 NC_019545_p47 CI phrog_8 transcriptional regulator transcription regulation -1 34410 34829
YP_007011040.1 NC_019545_p70 hypothetical protein singleton unknown function unknown function -1 46198 46356
YP_007010972.1 NC_019545_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 416 1735
YP_007011005.1 NC_019545_p35 tail assembly protein K phrog_30 minor tail protein tail 1 20551 21198
YP_007010978.1 NC_019545_p8 hypothetical protein phrog_2138 unknown function unknown function 1 6977 7156
YP_007011027.1 NC_019545_p57 hypothetical protein phrog_4595 unknown function unknown function 1 40669 40935