| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019545 |
Definition |
Salmonella phage SPN3UB, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
47355 |
Host Name |
Salmonella typhimurium |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
71 |
%GC |
49.61 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007011026.1 | NC_019545_p56 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 39970 | 40602 |
| YP_007011020.1 | NC_019545_p50 | PrpO | phrog_678 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 35674 | 36588 |
| YP_007011039.1 | NC_019545_p69 | Rz1 | phrog_3198 | Rz-like spanin | lysis | 1 | 45918 | 46124 |
| YP_007010981.1 | NC_019545_p11 | hypothetical protein | phrog_797 | unknown function | unknown function | 1 | 7781 | 8143 |
| YP_007011036.1 | NC_019545_p66 | hypothetical protein | phrog_1350 | holin | lysis | 1 | 44441 | 44755 |
| YP_007010980.1 | NC_019545_p10 | hypothetical protein | phrog_1261 | unknown function | unknown function | 1 | 7609 | 7788 |
| YP_007010975.1 | NC_019545_p5 | hypothetical protein | phrog_760 | unknown function | unknown function | 1 | 4149 | 5411 |
| YP_007010989.1 | NC_019545_p19 | Arc-like DNA binding domain protein | phrog_7906 | Arc-like transcriptional regulator | transcription regulation | -1 | 12049 | 12375 |
| YP_007011034.1 | NC_019545_p64 | antitermination protein Q | phrog_127 | anti-termination protein Q-like | transcription regulation | 1 | 43250 | 44047 |
| YP_007010985.1 | NC_019545_p15 | hypothetical protein | phrog_791 | unknown function | unknown function | 1 | 9854 | 10507 |
| YP_007010986.1 | NC_019545_p16 | hypothetical protein | phrog_1136 | unknown function | unknown function | 1 | 10729 | 11457 |
| YP_007010971.1 | NC_019545_p1 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 1 | 432 |
| YP_007010987.1 | NC_019545_p17 | hypothetical protein | phrog_12509 | unknown function | unknown function | -1 | 11479 | 11850 |
| YP_007011025.1 | NC_019545_p55 | Eaa protein | phrog_60 | unknown function | unknown function | 1 | 38796 | 39818 |
| YP_007010997.1 | NC_019545_p27 | hypothetical protein | phrog_19981 | unknown function | unknown function | 1 | 15735 | 16049 |
| YP_007010973.1 | NC_019545_p3 | hypothetical protein | phrog_146 | portal protein | head and packaging | 1 | 1868 | 3220 |
| YP_007011007.1 | NC_019545_p37 | host specificity protein J | phrog_31 | central tail fiber J | tail | 1 | 21678 | 24857 |
| YP_007010991.1 | NC_019545_p21 | hypothetical protein | phrog_245 | anti-repressor Ant | transcription regulation | 1 | 12649 | 13371 |
| YP_007011029.1 | NC_019545_p59 | hypothetical protein | phrog_1813 | unknown function | unknown function | 1 | 41386 | 41625 |
| YP_007010976.1 | NC_019545_p6 | hypothetical protein | phrog_766 | head decoration | head and packaging | 1 | 5424 | 5873 |
| YP_007011001.1 | NC_019545_p31 | minor tail protein M | phrog_14 | minor tail protein | tail | 1 | 18861 | 19208 |
| YP_007011013.1 | NC_019545_p43 | recombinase RecT family protein | phrog_561 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 29307 | 30416 |
| YP_007010992.1 | NC_019545_p22 | antirepressor family protein | phrog_4936 | transcriptional regulator | transcription regulation | 1 | 13451 | 14239 |
| YP_007011016.1 | NC_019545_p46 | hypothetical protein | phrog_1520 | unknown function | unknown function | -1 | 33853 | 34011 |
| YP_007010996.1 | NC_019545_p26 | hypothetical protein | phrog_21923 | unknown function | unknown function | 1 | 15386 | 15721 |
| YP_007011004.1 | NC_019545_p34 | minor tail protein L | phrog_18 | minor tail protein | tail | 1 | 19775 | 20479 |
| YP_007011002.1 | NC_019545_p32 | hypothetical protein | phrog_9873 | unknown function | unknown function | 1 | 19219 | 19425 |
| YP_007011022.1 | NC_019545_p52 | DNA-binding protein | phrog_2391 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37351 | 37698 |
| YP_007011031.1 | NC_019545_p61 | hypothetical protein | phrog_1212 | unknown function | unknown function | 1 | 42273 | 42473 |
| YP_007010990.1 | NC_019545_p20 | hypothetical protein | phrog_228 | Arc-like repressor | transcription regulation | 1 | 12486 | 12659 |
| YP_007011006.1 | NC_019545_p36 | tail assembly protein I | phrog_32 | tail assembly protein | tail | 1 | 21141 | 21668 |
| YP_007010974.1 | NC_019545_p4 | hypothetical protein | phrog_758 | head morphogenesis | head and packaging | 1 | 3174 | 4133 |
| YP_007010979.1 | NC_019545_p9 | hypothetical protein | phrog_786 | unknown function | unknown function | 1 | 7208 | 7609 |
| YP_007010977.1 | NC_019545_p7 | hypothetical protein | phrog_771 | virion structural protein | head and packaging | 1 | 6122 | 6967 |
| YP_007011018.1 | NC_019545_p48 | Cro | phrog_35 | transcriptional repressor | transcription regulation | 1 | 34944 | 35180 |
| YP_007011041.1 | NC_019545_p71 | KilA-N domain protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 46378 | 46899 |
| YP_007010994.1 | NC_019545_p24 | hypothetical protein | phrog_4293 | unknown function | unknown function | 1 | 14646 | 15020 |
| YP_007011010.1 | NC_019545_p40 | integrase | phrog_1 | integrase | integration and excision | 1 | 27493 | 28722 |
| YP_007010983.1 | NC_019545_p13 | hypothetical protein | phrog_782 | unknown function | unknown function | 1 | 8665 | 9051 |
| YP_007011003.1 | NC_019545_p33 | hypothetical protein | phrog_6806 | unknown function | unknown function | -1 | 19394 | 19609 |
| YP_007011019.1 | NC_019545_p49 | CII | phrog_725 | CII-like regulator | transcription regulation | 1 | 35200 | 35520 |
| YP_007010993.1 | NC_019545_p23 | hypothetical protein | phrog_1886 | unknown function | unknown function | 1 | 14239 | 14511 |
| YP_007011000.1 | NC_019545_p30 | tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 16690 | 18858 |
| YP_007011008.1 | NC_019545_p38 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 24866 | 25825 |
| YP_007011037.1 | NC_019545_p67 | endolysin | phrog_7 | endolysin | lysis | 1 | 44758 | 45300 |
| YP_007010984.1 | NC_019545_p14 | hypothetical protein | phrog_853 | major tail protein | tail | 1 | 9069 | 9809 |
| YP_007011032.1 | NC_019545_p62 | NinG | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42476 | 43117 |
| YP_007011024.1 | NC_019545_p54 | hypothetical protein | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 38030 | 38785 |
| YP_007011023.1 | NC_019545_p53 | hypothetical protein | phrog_1667 | unknown function | unknown function | 1 | 37695 | 38030 |
| YP_007011009.1 | NC_019545_p39 | hypothetical protein | phrog_1980 | tail fiber protein | tail | 1 | 25836 | 26972 |
| YP_007011030.1 | NC_019545_p60 | hypothetical protein | phrog_319 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 41665 | 42267 |
| YP_007011012.1 | NC_019545_p42 | hypothetical protein | phrog_1852 | unknown function | unknown function | -1 | 29025 | 29264 |
| YP_007011033.1 | NC_019545_p63 | hypothetical protein | phrog_2705 | unknown function | unknown function | 1 | 43114 | 43260 |
| YP_007011015.1 | NC_019545_p45 | hypothetical protein | phrog_2434 | unknown function | unknown function | -1 | 33481 | 33768 |
| YP_007011011.1 | NC_019545_p41 | excisionase-like protein | phrog_5914 | excisionase | integration and excision | -1 | 28700 | 28984 |
| YP_007011028.1 | NC_019545_p58 | DinI | phrog_189 | RecA filament binding protein DinI | DNA, RNA and nucleotide metabolism | 1 | 41091 | 41330 |
| YP_007010999.1 | NC_019545_p29 | hypothetical protein | phrog_6806 | unknown function | unknown function | -1 | 16318 | 16515 |
| YP_007011021.1 | NC_019545_p51 | DNA replication protein DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 36591 | 37340 |
| YP_007010988.1 | NC_019545_p18 | hypothetical protein | phrog_14502 | unknown function | unknown function | 1 | 11771 | 12028 |
| YP_007010998.1 | NC_019545_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16122 | 16334 |
| YP_007010995.1 | NC_019545_p25 | hypothetical protein | phrog_6324 | unknown function | unknown function | 1 | 15013 | 15315 |
| YP_007010982.1 | NC_019545_p12 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 8231 | 8668 |
| YP_007011035.1 | NC_019545_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44219 | 44386 |
| YP_007011038.1 | NC_019545_p68 | endopeptidase Rz | phrog_13 | Rz-like spanin | lysis | 1 | 45698 | 46165 |
| YP_007011014.1 | NC_019545_p44 | RecE | phrog_607 | exonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 30427 | 33354 |
| YP_007011017.1 | NC_019545_p47 | CI | phrog_8 | transcriptional regulator | transcription regulation | -1 | 34410 | 34829 |
| YP_007011040.1 | NC_019545_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46198 | 46356 |
| YP_007010972.1 | NC_019545_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 416 | 1735 |
| YP_007011005.1 | NC_019545_p35 | tail assembly protein K | phrog_30 | minor tail protein | tail | 1 | 20551 | 21198 |
| YP_007010978.1 | NC_019545_p8 | hypothetical protein | phrog_2138 | unknown function | unknown function | 1 | 6977 | 7156 |
| YP_007011027.1 | NC_019545_p57 | hypothetical protein | phrog_4595 | unknown function | unknown function | 1 | 40669 | 40935 |