Genomic map of Liberibacter phage SC1 (NC_019549)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019549
Definition
Liberibacter phage SC1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
40048
Host Name
Candidatus Liberibacter asiaticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
40
%GC
41.19
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007011078.1 NC_019549_p23 hypothetical protein phrog_21367 unknown function unknown function 1 26151 26363
YP_007011071.1 NC_019549_p16 hypothetical protein singleton unknown function unknown function -1 19904 20236
YP_007011065.1 NC_019549_p10 hypothetical protein phrog_376 tail protein tail -1 13900 15636
YP_007011060.1 NC_019549_p5 hypothetical protein phrog_684 virion structural protein head and packaging -1 3192 5786
YP_007011072.1 NC_019549_p17 phage terminase large subunit phrog_2 terminase large subunit head and packaging -1 20309 21844
YP_007011090.1 NC_019549_p35 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 34895 36922
YP_007011077.1 NC_019549_p22 hypothetical protein phrog_21105 unknown function unknown function 1 25952 26158
YP_007011094.1 NC_019549_p39 guanylate kinase phrog_1815 guanylate kinase other 1 38954 39511
YP_007011059.1 NC_019549_p4 hypothetical protein phrog_15612 unknown function unknown function -1 1062 3185
YP_007011057.1 NC_019549_p2 hypothetical protein phrog_12290 unknown function unknown function -1 472 744
YP_007011091.1 NC_019549_p36 endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 36919 37230
YP_007011076.1 NC_019549_p21 hypothetical protein phrog_9679 unknown function unknown function 1 25424 25816
YP_007011064.1 NC_019549_p9 hypothetical protein singleton unknown function unknown function -1 9853 13875
YP_007011081.1 NC_019549_p26 hypothetical protein phrog_9415 unknown function unknown function -1 27328 27705
YP_007011075.1 NC_019549_p20 hypothetical protein phrog_17944 unknown function unknown function 1 24841 25362
YP_007011056.1 NC_019549_p1 hypothetical protein phrog_6637 unknown function unknown function -1 2 475
YP_007011082.1 NC_019549_p27 phage associated primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 27753 30125
YP_007011073.1 NC_019549_p18 hypothetical protein phrog_1482 terminase small subunit head and packaging -1 22379 22894
YP_007011095.1 NC_019549_p40 hypothetical protein singleton unknown function unknown function 1 39675 40046
YP_007011074.1 NC_019549_p19 hypothetical protein phrog_8 transcriptional regulator transcription regulation -1 23973 24590
YP_007011080.1 NC_019549_p25 hypothetical protein phrog_18707 anti-repressor transcription regulation 1 26912 27097
YP_007011062.1 NC_019549_p7 hypothetical protein phrog_992 head protein head and packaging -1 7237 9360
YP_007011086.1 NC_019549_p31 hypothetical protein phrog_16052 unknown function unknown function 1 31647 31970
YP_007011069.1 NC_019549_p14 hypothetical protein phrog_14772 unknown function unknown function -1 17915 18244
YP_007011061.1 NC_019549_p6 hypothetical protein phrog_14422 unknown function unknown function -1 5783 7219
YP_007011087.1 NC_019549_p32 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 32098 33264
YP_007011067.1 NC_019549_p12 major capsid protein phrog_3437 major head protein head and packaging -1 16156 17187
YP_007011079.1 NC_019549_p24 hypothetical protein phrog_5070 unknown function unknown function 1 26395 26799
YP_007011085.1 NC_019549_p30 hypothetical protein phrog_9679 unknown function unknown function 1 31186 31557
YP_007011083.1 NC_019549_p28 hypothetical protein phrog_17714 unknown function unknown function -1 30126 30515
YP_007011058.1 NC_019549_p3 hypothetical protein singleton unknown function unknown function -1 737 1075
YP_007011070.1 NC_019549_p15 phage-related head-to-tail joining protein phrog_332 head-tail adaptor connector -1 18237 19907
YP_007011068.1 NC_019549_p13 hypothetical protein phrog_18242 protease other -1 17200 17904
YP_007011089.1 NC_019549_p34 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 34241 34891
YP_007011063.1 NC_019549_p8 hypothetical protein phrog_32449 unknown function unknown function -1 9357 9860
YP_007011093.1 NC_019549_p38 DNA ligase phrog_18456 DNA ligase DNA, RNA and nucleotide metabolism 1 38593 38952
YP_007011084.1 NC_019549_p29 hypothetical protein phrog_16809 unknown function unknown function -1 30533 30739
YP_007011088.1 NC_019549_p33 Bro-N family phage antirepressor phrog_130 anti-repressor Ant transcription regulation 1 33435 34223
YP_007011066.1 NC_019549_p11 hypothetical protein phrog_394 tail protein tail -1 15629 16156
YP_007011092.1 NC_019549_p37 SNF2 Dead box helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 37215 38600