| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019549 |
Definition |
Liberibacter phage SC1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
40048 |
Host Name |
Candidatus Liberibacter asiaticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
40 |
%GC |
41.19 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007011078.1 | NC_019549_p23 | hypothetical protein | phrog_21367 | unknown function | unknown function | 1 | 26151 | 26363 |
| YP_007011071.1 | NC_019549_p16 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19904 | 20236 |
| YP_007011065.1 | NC_019549_p10 | hypothetical protein | phrog_376 | tail protein | tail | -1 | 13900 | 15636 |
| YP_007011060.1 | NC_019549_p5 | hypothetical protein | phrog_684 | virion structural protein | head and packaging | -1 | 3192 | 5786 |
| YP_007011072.1 | NC_019549_p17 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 20309 | 21844 |
| YP_007011090.1 | NC_019549_p35 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 34895 | 36922 |
| YP_007011077.1 | NC_019549_p22 | hypothetical protein | phrog_21105 | unknown function | unknown function | 1 | 25952 | 26158 |
| YP_007011094.1 | NC_019549_p39 | guanylate kinase | phrog_1815 | guanylate kinase | other | 1 | 38954 | 39511 |
| YP_007011059.1 | NC_019549_p4 | hypothetical protein | phrog_15612 | unknown function | unknown function | -1 | 1062 | 3185 |
| YP_007011057.1 | NC_019549_p2 | hypothetical protein | phrog_12290 | unknown function | unknown function | -1 | 472 | 744 |
| YP_007011091.1 | NC_019549_p36 | endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36919 | 37230 |
| YP_007011076.1 | NC_019549_p21 | hypothetical protein | phrog_9679 | unknown function | unknown function | 1 | 25424 | 25816 |
| YP_007011064.1 | NC_019549_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9853 | 13875 |
| YP_007011081.1 | NC_019549_p26 | hypothetical protein | phrog_9415 | unknown function | unknown function | -1 | 27328 | 27705 |
| YP_007011075.1 | NC_019549_p20 | hypothetical protein | phrog_17944 | unknown function | unknown function | 1 | 24841 | 25362 |
| YP_007011056.1 | NC_019549_p1 | hypothetical protein | phrog_6637 | unknown function | unknown function | -1 | 2 | 475 |
| YP_007011082.1 | NC_019549_p27 | phage associated primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 27753 | 30125 |
| YP_007011073.1 | NC_019549_p18 | hypothetical protein | phrog_1482 | terminase small subunit | head and packaging | -1 | 22379 | 22894 |
| YP_007011095.1 | NC_019549_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39675 | 40046 |
| YP_007011074.1 | NC_019549_p19 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 23973 | 24590 |
| YP_007011080.1 | NC_019549_p25 | hypothetical protein | phrog_18707 | anti-repressor | transcription regulation | 1 | 26912 | 27097 |
| YP_007011062.1 | NC_019549_p7 | hypothetical protein | phrog_992 | head protein | head and packaging | -1 | 7237 | 9360 |
| YP_007011086.1 | NC_019549_p31 | hypothetical protein | phrog_16052 | unknown function | unknown function | 1 | 31647 | 31970 |
| YP_007011069.1 | NC_019549_p14 | hypothetical protein | phrog_14772 | unknown function | unknown function | -1 | 17915 | 18244 |
| YP_007011061.1 | NC_019549_p6 | hypothetical protein | phrog_14422 | unknown function | unknown function | -1 | 5783 | 7219 |
| YP_007011087.1 | NC_019549_p32 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 32098 | 33264 |
| YP_007011067.1 | NC_019549_p12 | major capsid protein | phrog_3437 | major head protein | head and packaging | -1 | 16156 | 17187 |
| YP_007011079.1 | NC_019549_p24 | hypothetical protein | phrog_5070 | unknown function | unknown function | 1 | 26395 | 26799 |
| YP_007011085.1 | NC_019549_p30 | hypothetical protein | phrog_9679 | unknown function | unknown function | 1 | 31186 | 31557 |
| YP_007011083.1 | NC_019549_p28 | hypothetical protein | phrog_17714 | unknown function | unknown function | -1 | 30126 | 30515 |
| YP_007011058.1 | NC_019549_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 737 | 1075 |
| YP_007011070.1 | NC_019549_p15 | phage-related head-to-tail joining protein | phrog_332 | head-tail adaptor | connector | -1 | 18237 | 19907 |
| YP_007011068.1 | NC_019549_p13 | hypothetical protein | phrog_18242 | protease | other | -1 | 17200 | 17904 |
| YP_007011089.1 | NC_019549_p34 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34241 | 34891 |
| YP_007011063.1 | NC_019549_p8 | hypothetical protein | phrog_32449 | unknown function | unknown function | -1 | 9357 | 9860 |
| YP_007011093.1 | NC_019549_p38 | DNA ligase | phrog_18456 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 38593 | 38952 |
| YP_007011084.1 | NC_019549_p29 | hypothetical protein | phrog_16809 | unknown function | unknown function | -1 | 30533 | 30739 |
| YP_007011088.1 | NC_019549_p33 | Bro-N family phage antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 33435 | 34223 |
| YP_007011066.1 | NC_019549_p11 | hypothetical protein | phrog_394 | tail protein | tail | -1 | 15629 | 16156 |
| YP_007011092.1 | NC_019549_p37 | SNF2 Dead box helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 37215 | 38600 |