Genomic map of Liberibacter phage SC2 (NC_019550)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019550
Definition
Liberibacter phage SC2, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
38997
Host Name
Candidatus Liberibacter asiaticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
47
%GC
39.37
Number of singletons
3
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007011139.1 NC_019550_p44 hypothetical protein phrog_6637 unknown function unknown function -1 36733 37206
YP_007011135.1 NC_019550_p40 DNA ligase phrog_18456 DNA ligase DNA, RNA and nucleotide metabolism 1 34083 34442
YP_007011104.1 NC_019550_p9 hypothetical protein phrog_18250 integrase integration and excision -1 7805 8161
YP_007011118.1 NC_019550_p23 hypothetical protein phrog_21105 unknown function unknown function 1 21422 21628
YP_007011111.1 NC_019550_p16 hypothetical protein phrog_14772 unknown function unknown function -1 13986 14258
YP_007011109.1 NC_019550_p14 major capsid protein phrog_3437 major head protein head and packaging -1 12300 13220
YP_007011101.1 NC_019550_p6 hypothetical protein phrog_14422 unknown function unknown function -1 4199 5425
YP_007011128.1 NC_019550_p33 hypothetical protein phrog_16052 unknown function unknown function 1 27137 27460
YP_007011098.1 NC_019550_p3 hypothetical protein singleton unknown function unknown function -1 749 898
YP_007011132.1 NC_019550_p37 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 30385 32412
YP_007011121.1 NC_019550_p26 hypothetical protein phrog_18707 anti-repressor transcription regulation 1 22382 22567
YP_007011130.1 NC_019550_p35 Bro-N family phage antirepressor phrog_130 anti-repressor Ant transcription regulation 1 28925 29713
YP_007011105.1 NC_019550_p10 hypothetical protein phrog_21225 exonuclease DNA, RNA and nucleotide metabolism -1 8163 9404
YP_007011129.1 NC_019550_p34 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 27588 28754
YP_007011107.1 NC_019550_p12 hypothetical protein phrog_376 tail protein tail -1 9910 11682
YP_007011138.1 NC_019550_p43 collagen triple helix repeat phrog_6320 tail fiber protein tail 1 35739 36677
YP_007011106.1 NC_019550_p11 hypothetical protein singleton unknown function unknown function -1 9376 9903
YP_007011119.1 NC_019550_p24 hypothetical protein phrog_21367 unknown function unknown function 1 21621 21833
YP_007011131.1 NC_019550_p36 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 29731 30381
YP_007011137.1 NC_019550_p42 hypothetical protein phrog_20262 unknown function unknown function 1 35061 35528
YP_007011096.1 NC_019550_p1 hypothetical protein phrog_6637 unknown function unknown function -1 11 487
YP_007011113.1 NC_019550_p18 phage terminase large subunit phrog_2 terminase large subunit head and packaging -1 15877 17427
YP_007011126.1 NC_019550_p31 hypothetical protein phrog_22702 unknown function unknown function -1 26206 26469
YP_007011103.1 NC_019550_p8 hypothetical protein singleton unknown function unknown function -1 7672 7746
YP_007011108.1 NC_019550_p13 hypothetical protein phrog_394 tail protein tail -1 11675 12193
YP_007011117.1 NC_019550_p22 hypothetical protein phrog_9679 unknown function unknown function 1 20894 21286
YP_007011120.1 NC_019550_p25 hypothetical protein phrog_5070 unknown function unknown function 1 21865 22269
YP_007011123.1 NC_019550_p28 phage associated primase/P4 family phage/plasmid primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 23223 25595
YP_007011112.1 NC_019550_p17 phage-related head-to-tail joining protein phrog_332 head-tail adaptor connector -1 14255 15874
YP_007011100.1 NC_019550_p5 hypothetical protein phrog_684 virion structural protein head and packaging -1 1773 4202
YP_007011110.1 NC_019550_p15 hypothetical protein phrog_18242 protease other -1 13234 13974
YP_007011122.1 NC_019550_p27 hypothetical protein phrog_9415 unknown function unknown function -1 22798 23175
YP_007011140.1 NC_019550_p45 hypothetical protein phrog_12290 unknown function unknown function -1 37203 37475
YP_007011124.1 NC_019550_p29 hypothetical protein phrog_17714 unknown function unknown function -1 25596 25985
YP_007011133.1 NC_019550_p38 endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 32409 32720
YP_007011115.1 NC_019550_p20 hypothetical protein phrog_8 transcriptional regulator transcription regulation -1 19802 20401
YP_007011116.1 NC_019550_p21 hypothetical protein phrog_17944 unknown function unknown function 1 20582 20803
YP_007011099.1 NC_019550_p4 hypothetical protein phrog_15612 unknown function unknown function -1 934 1776
YP_007011127.1 NC_019550_p32 hypothetical protein phrog_9679 unknown function unknown function 1 26676 27047
YP_007011136.1 NC_019550_p41 guanylate kinase phrog_1815 guanylate kinase other 1 34444 35016
YP_007011097.1 NC_019550_p2 hypothetical protein phrog_12290 unknown function unknown function -1 484 756
YP_007011142.1 NC_019550_p47 hypothetical protein phrog_26356 unknown function unknown function 1 38043 38987
YP_007011125.1 NC_019550_p30 hypothetical protein phrog_16809 unknown function unknown function -1 26003 26209
YP_007011134.1 NC_019550_p39 SNF2 Dead box helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 32705 34090
YP_007011102.1 NC_019550_p7 hypothetical protein phrog_992 head protein head and packaging -1 5409 7670
YP_007011114.1 NC_019550_p19 hypothetical protein phrog_1482 terminase small subunit head and packaging -1 17962 18477
YP_007011141.1 NC_019550_p46 hypothetical protein phrog_27382 unknown function unknown function -1 37563 37718