Genomic map of Vibrio phage vB_VpaS_MAR10 (NC_019713)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019713
Definition
Vibrio phage vB_VpaS_MAR10, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mardecavirus.
DB of origin
REFSEQ
Length
78751
Host Name
Vibrio parahaemolyticus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
107
%GC
49.7
Number of singletons
12
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007111904.1 NC_019713_p58 hypothetical protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 39236 40072
YP_007111929.1 NC_019713_p83 MazG pyrophosphatase phrog_37613 MazG-like pyrophosphatase other 1 63074 64258
YP_007111913.1 NC_019713_p67 hypothetical protein phrog_38529 unknown function unknown function 1 47225 48385
YP_007111945.1 NC_019713_p99 hypothetical protein phrog_35593 unknown function unknown function 1 73154 73375
YP_007111869.1 NC_019713_p23 hypothetical protein singleton unknown function unknown function 1 9984 11648
YP_007111888.1 NC_019713_p42 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 25250 25705
YP_007111851.1 NC_019713_p5 hypothetical protein phrog_38763 unknown function unknown function 1 1727 2080
YP_007111885.1 NC_019713_p39 hypothetical protein phrog_290 minor tail protein tail 1 22899 24341
YP_007111860.1 NC_019713_p14 hypothetical protein phrog_1275 Rz-like spanin lysis 1 6328 6534
YP_007111857.1 NC_019713_p11 hypothetical protein phrog_31817 unknown function unknown function 1 4680 5252
YP_007111881.1 NC_019713_p35 hypothetical protein phrog_32242 unknown function unknown function 1 20982 21446
YP_007111918.1 NC_019713_p72 DNA polymerase III phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 53628 54560
YP_007111879.1 NC_019713_p33 peptidase phrog_206 head scaffolding protein head and packaging 1 18775 19572
YP_007111947.1 NC_019713_p101 hypothetical protein phrog_34003 unknown function unknown function 1 74143 74421
YP_007111894.1 NC_019713_p48 hypothetical protein phrog_1180 tail assembly chaperone tail 1 32814 33053
YP_007111880.1 NC_019713_p34 major capsid protein phrog_283 major head protein head and packaging 1 19778 20905
YP_007111914.1 NC_019713_p68 hypothetical protein phrog_34242 unknown function unknown function 1 48455 48847
YP_007111949.1 NC_019713_p103 hypothetical protein phrog_18238 unknown function unknown function 1 74819 75250
YP_007111919.1 NC_019713_p73 hypothetical protein phrog_1069 unknown function unknown function 1 54566 55057
YP_007111936.1 NC_019713_p90 hypothetical protein phrog_30538 unknown function unknown function 1 68276 68737
YP_007111926.1 NC_019713_p80 recombination endonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 59384 60379
YP_007111937.1 NC_019713_p91 hypothetical protein phrog_27986 unknown function unknown function 1 68731 69069
YP_007111934.1 NC_019713_p88 hypothetical protein singleton unknown function unknown function 1 66837 66938
YP_007111893.1 NC_019713_p47 hypothetical protein phrog_778 tail assembly protein tail 1 31981 32793
YP_007111873.1 NC_019713_p27 hypothetical protein phrog_34201 unknown function unknown function 1 13166 13621
YP_007111872.1 NC_019713_p26 hypothetical protein phrog_19233 unknown function unknown function 1 12723 13169
YP_007111953.1 NC_019713_p107 hypothetical protein phrog_29658 unknown function unknown function 1 76902 77405
YP_007111908.1 NC_019713_p62 ATP-dependent helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 42898 44448
YP_007111928.1 NC_019713_p82 hypothetical protein phrog_34362 unknown function unknown function 1 62232 62849
YP_007111912.1 NC_019713_p66 hypothetical protein phrog_35491 unknown function unknown function 1 46531 47154
YP_007111850.1 NC_019713_p4 hypothetical protein phrog_11725 unknown function unknown function 1 1525 1722
YP_007111895.1 NC_019713_p49 hypothetical protein phrog_1196 tail assembly chaperone tail 1 33053 33298
YP_007111871.1 NC_019713_p25 hypothetical protein singleton unknown function unknown function 1 12158 12637
YP_007111924.1 NC_019713_p78 hypothetical protein phrog_419 unknown function unknown function 1 58235 58747
YP_007111930.1 NC_019713_p84 hypothetical protein phrog_4102 terminase small subunit head and packaging 1 64397 64891
YP_007111911.1 NC_019713_p65 hypothetical protein singleton unknown function unknown function 1 46176 46703
YP_007111863.1 NC_019713_p17 hypothetical protein phrog_33329 unknown function unknown function 1 7403 7735
YP_007111940.1 NC_019713_p94 hypothetical protein phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism 1 70355 70831
YP_007111907.1 NC_019713_p61 DNA primase/helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 41316 42935
YP_007111901.1 NC_019713_p55 hypothetical protein singleton unknown function unknown function 1 37641 37760
YP_007111883.1 NC_019713_p37 hypothetical protein phrog_161 head closure Hc1 connector 1 22079 22471
YP_007111917.1 NC_019713_p71 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 52775 53614
YP_007111944.1 NC_019713_p98 hypothetical protein phrog_38790 unknown function unknown function 1 72763 73164
YP_007111906.1 NC_019713_p60 DNA polymerase phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 40462 41316
YP_007111935.1 NC_019713_p89 parB-like partitioning protein phrog_32069 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 67027 68073
YP_007111854.1 NC_019713_p8 hypothetical protein phrog_34538 unknown function unknown function 1 2658 3161
YP_007111856.1 NC_019713_p10 hypothetical protein phrog_29093 unknown function unknown function 1 4033 4668
YP_007111950.1 NC_019713_p104 hypothetical protein phrog_33167 unknown function unknown function 1 75649 76428
YP_007111889.1 NC_019713_p43 tail tape measure protein phrog_32885 tail length tape measure protein tail 1 25705 28551
YP_007111874.1 NC_019713_p28 hypothetical protein phrog_28710 unknown function unknown function 1 13614 14267
YP_007111948.1 NC_019713_p102 hypothetical protein phrog_34008 unknown function unknown function 1 74450 74773
YP_007111847.1 NC_019713_p1 hypothetical protein phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism 1 219 926
YP_007111923.1 NC_019713_p77 RecA protein phrog_97 UvsX-like recombinase other 1 57103 58215
YP_007111862.1 NC_019713_p16 transcriptional regulator phrog_13512 transcriptional regulator transcription regulation 1 6842 7375
YP_007111870.1 NC_019713_p24 hypothetical protein singleton unknown function unknown function 1 11660 12148
YP_007111900.1 NC_019713_p54 hypothetical protein phrog_1152 Rz-like spanin lysis 1 37166 37660
YP_007111899.1 NC_019713_p53 protein containing transglycosylase domain phrog_669 endolysin lysis 1 36520 37110
YP_007111855.1 NC_019713_p9 hypothetical protein phrog_30130 unknown function unknown function 1 3161 3946
YP_007111887.1 NC_019713_p41 hypothetical protein phrog_3817 tail chaperonin tail 1 24886 25275
YP_007111941.1 NC_019713_p95 hypothetical protein phrog_36123 unknown function unknown function 1 71625 71777
YP_007111933.1 NC_019713_p87 hypothetical protein singleton unknown function unknown function 1 66602 66775
YP_007111876.1 NC_019713_p30 terminase large subunit phrog_2 terminase large subunit head and packaging 1 14745 16052
YP_007111853.1 NC_019713_p7 hypothetical protein phrog_31012 unknown function unknown function 1 2354 2641
YP_007111951.1 NC_019713_p105 hypothetical protein phrog_7744 unknown function unknown function 1 76445 76627
YP_007111902.1 NC_019713_p56 hypothetical protein phrog_30562 unknown function unknown function 1 37838 38146
YP_007111943.1 NC_019713_p97 hypothetical protein phrog_32809 unknown function unknown function 1 72284 72760
YP_007111848.1 NC_019713_p2 hypothetical protein phrog_35364 unknown function unknown function 1 931 1152
YP_007111939.1 NC_019713_p93 hypothetical protein phrog_32725 unknown function unknown function 1 69963 70283
YP_007111892.1 NC_019713_p46 hypothetical protein phrog_1082 tail assembly protein tail 1 30305 31981
YP_007111865.1 NC_019713_p19 hypothetical protein phrog_31498 unknown function unknown function 1 8167 8463
YP_007111867.1 NC_019713_p21 hypothetical protein phrog_29118 unknown function unknown function 1 9134 9535
YP_007111938.1 NC_019713_p92 hypothetical protein singleton unknown function unknown function 1 69179 69889
YP_007111886.1 NC_019713_p40 hypothetical protein phrog_313 Tail assembly chaperone tail 1 24431 24886
YP_007111868.1 NC_019713_p22 hypothetical protein phrog_16185 tail protein tail 1 9624 9968
YP_007111898.1 NC_019713_p52 hypothetical protein phrog_37365 unknown function unknown function 1 36315 36596
YP_007111859.1 NC_019713_p13 hypothetical protein phrog_30691 unknown function unknown function 1 5852 6328
YP_007111905.1 NC_019713_p59 hypothetical protein phrog_29221 unknown function unknown function 1 40056 40478
YP_007111920.1 NC_019713_p74 hypothetical protein phrog_35953 unknown function unknown function 1 55060 55200
YP_007111942.1 NC_019713_p96 hypothetical protein phrog_29806 unknown function unknown function 1 71877 72269
YP_007111875.1 NC_019713_p29 HNH endonuclease phrog_33554 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14376 14720
YP_007111877.1 NC_019713_p31 portal protein phrog_145 portal protein head and packaging 1 16065 17609
YP_007111927.1 NC_019713_p81 SbcC type exonuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 60376 62232
YP_007111909.1 NC_019713_p63 hypothetical protein phrog_631 unknown function unknown function 1 44448 45062
YP_007111852.1 NC_019713_p6 hypothetical protein singleton unknown function unknown function 1 2094 2357
YP_007111903.1 NC_019713_p57 hypothetical protein singleton unknown function unknown function 1 38149 39231
YP_007111858.1 NC_019713_p12 DNA ligase phrog_2561 DNA ligase DNA, RNA and nucleotide metabolism 1 5254 5745
YP_007111916.1 NC_019713_p70 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 50073 52727
YP_007111896.1 NC_019713_p50 hypothetical protein phrog_1101 tail protein tail 1 33279 35837
YP_007111952.1 NC_019713_p106 hypothetical protein phrog_38265 unknown function unknown function 1 76629 76844
YP_007111882.1 NC_019713_p36 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 21525 22067
YP_007111931.1 NC_019713_p85 hypothetical protein phrog_7203 unknown function unknown function 1 64999 65688
YP_007111921.1 NC_019713_p75 hypothetical protein phrog_34306 unknown function unknown function 1 55200 56363
YP_007111849.1 NC_019713_p3 hypothetical protein singleton unknown function unknown function 1 1154 1513
YP_007111946.1 NC_019713_p100 hypothetical protein phrog_28163 unknown function unknown function 1 73397 73774
YP_007111915.1 NC_019713_p69 beta clamp protein phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 49012 50070
YP_007111861.1 NC_019713_p15 hypothetical protein phrog_36518 unknown function unknown function 1 6534 6758
YP_007111922.1 NC_019713_p76 thymidylate kinase phrog_761 thymidylate kinase other 1 56439 57074
YP_007111891.1 NC_019713_p45 hypothetical protein singleton unknown function unknown function 1 29418 30305
YP_007111925.1 NC_019713_p79 hypothetical protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 58797 59387
YP_007111932.1 NC_019713_p86 hypothetical protein phrog_33526 unknown function unknown function 1 65762 66478
YP_007111884.1 NC_019713_p38 hypothetical protein phrog_179 tail terminator connector 1 22468 22887
YP_007111878.1 NC_019713_p32 hypothetical protein phrog_241 head morphogenesis head and packaging 1 17609 18727
YP_007111864.1 NC_019713_p18 hypothetical protein phrog_31906 unknown function unknown function 1 7803 8138
YP_007111890.1 NC_019713_p44 hypothetical protein phrog_687 structural protein head and packaging 1 28555 29376
YP_007111866.1 NC_019713_p20 hypothetical protein phrog_799 DNA methyltransferase other 1 8479 9129
YP_007111910.1 NC_019713_p64 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 45059 46183
YP_007111897.1 NC_019713_p51 hypothetical protein phrog_29340 unknown function unknown function 1 35893 36312