| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019713 |
Definition |
Vibrio phage vB_VpaS_MAR10, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Mardecavirus. |
DB of origin |
REFSEQ |
Length |
78751 |
Host Name |
Vibrio parahaemolyticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
107 |
%GC |
49.7 |
Number of singletons |
12 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007111904.1 | NC_019713_p58 | hypothetical protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 39236 | 40072 |
| YP_007111929.1 | NC_019713_p83 | MazG pyrophosphatase | phrog_37613 | MazG-like pyrophosphatase | other | 1 | 63074 | 64258 |
| YP_007111913.1 | NC_019713_p67 | hypothetical protein | phrog_38529 | unknown function | unknown function | 1 | 47225 | 48385 |
| YP_007111945.1 | NC_019713_p99 | hypothetical protein | phrog_35593 | unknown function | unknown function | 1 | 73154 | 73375 |
| YP_007111869.1 | NC_019713_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9984 | 11648 |
| YP_007111888.1 | NC_019713_p42 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 25250 | 25705 |
| YP_007111851.1 | NC_019713_p5 | hypothetical protein | phrog_38763 | unknown function | unknown function | 1 | 1727 | 2080 |
| YP_007111885.1 | NC_019713_p39 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 22899 | 24341 |
| YP_007111860.1 | NC_019713_p14 | hypothetical protein | phrog_1275 | Rz-like spanin | lysis | 1 | 6328 | 6534 |
| YP_007111857.1 | NC_019713_p11 | hypothetical protein | phrog_31817 | unknown function | unknown function | 1 | 4680 | 5252 |
| YP_007111881.1 | NC_019713_p35 | hypothetical protein | phrog_32242 | unknown function | unknown function | 1 | 20982 | 21446 |
| YP_007111918.1 | NC_019713_p72 | DNA polymerase III | phrog_5846 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 53628 | 54560 |
| YP_007111879.1 | NC_019713_p33 | peptidase | phrog_206 | head scaffolding protein | head and packaging | 1 | 18775 | 19572 |
| YP_007111947.1 | NC_019713_p101 | hypothetical protein | phrog_34003 | unknown function | unknown function | 1 | 74143 | 74421 |
| YP_007111894.1 | NC_019713_p48 | hypothetical protein | phrog_1180 | tail assembly chaperone | tail | 1 | 32814 | 33053 |
| YP_007111880.1 | NC_019713_p34 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 19778 | 20905 |
| YP_007111914.1 | NC_019713_p68 | hypothetical protein | phrog_34242 | unknown function | unknown function | 1 | 48455 | 48847 |
| YP_007111949.1 | NC_019713_p103 | hypothetical protein | phrog_18238 | unknown function | unknown function | 1 | 74819 | 75250 |
| YP_007111919.1 | NC_019713_p73 | hypothetical protein | phrog_1069 | unknown function | unknown function | 1 | 54566 | 55057 |
| YP_007111936.1 | NC_019713_p90 | hypothetical protein | phrog_30538 | unknown function | unknown function | 1 | 68276 | 68737 |
| YP_007111926.1 | NC_019713_p80 | recombination endonuclease | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59384 | 60379 |
| YP_007111937.1 | NC_019713_p91 | hypothetical protein | phrog_27986 | unknown function | unknown function | 1 | 68731 | 69069 |
| YP_007111934.1 | NC_019713_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66837 | 66938 |
| YP_007111893.1 | NC_019713_p47 | hypothetical protein | phrog_778 | tail assembly protein | tail | 1 | 31981 | 32793 |
| YP_007111873.1 | NC_019713_p27 | hypothetical protein | phrog_34201 | unknown function | unknown function | 1 | 13166 | 13621 |
| YP_007111872.1 | NC_019713_p26 | hypothetical protein | phrog_19233 | unknown function | unknown function | 1 | 12723 | 13169 |
| YP_007111953.1 | NC_019713_p107 | hypothetical protein | phrog_29658 | unknown function | unknown function | 1 | 76902 | 77405 |
| YP_007111908.1 | NC_019713_p62 | ATP-dependent helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 42898 | 44448 |
| YP_007111928.1 | NC_019713_p82 | hypothetical protein | phrog_34362 | unknown function | unknown function | 1 | 62232 | 62849 |
| YP_007111912.1 | NC_019713_p66 | hypothetical protein | phrog_35491 | unknown function | unknown function | 1 | 46531 | 47154 |
| YP_007111850.1 | NC_019713_p4 | hypothetical protein | phrog_11725 | unknown function | unknown function | 1 | 1525 | 1722 |
| YP_007111895.1 | NC_019713_p49 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 33053 | 33298 |
| YP_007111871.1 | NC_019713_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12158 | 12637 |
| YP_007111924.1 | NC_019713_p78 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 58235 | 58747 |
| YP_007111930.1 | NC_019713_p84 | hypothetical protein | phrog_4102 | terminase small subunit | head and packaging | 1 | 64397 | 64891 |
| YP_007111911.1 | NC_019713_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46176 | 46703 |
| YP_007111863.1 | NC_019713_p17 | hypothetical protein | phrog_33329 | unknown function | unknown function | 1 | 7403 | 7735 |
| YP_007111940.1 | NC_019713_p94 | hypothetical protein | phrog_3377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 70355 | 70831 |
| YP_007111907.1 | NC_019713_p61 | DNA primase/helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 41316 | 42935 |
| YP_007111901.1 | NC_019713_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37641 | 37760 |
| YP_007111883.1 | NC_019713_p37 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 22079 | 22471 |
| YP_007111917.1 | NC_019713_p71 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 52775 | 53614 |
| YP_007111944.1 | NC_019713_p98 | hypothetical protein | phrog_38790 | unknown function | unknown function | 1 | 72763 | 73164 |
| YP_007111906.1 | NC_019713_p60 | DNA polymerase | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40462 | 41316 |
| YP_007111935.1 | NC_019713_p89 | parB-like partitioning protein | phrog_32069 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 67027 | 68073 |
| YP_007111854.1 | NC_019713_p8 | hypothetical protein | phrog_34538 | unknown function | unknown function | 1 | 2658 | 3161 |
| YP_007111856.1 | NC_019713_p10 | hypothetical protein | phrog_29093 | unknown function | unknown function | 1 | 4033 | 4668 |
| YP_007111950.1 | NC_019713_p104 | hypothetical protein | phrog_33167 | unknown function | unknown function | 1 | 75649 | 76428 |
| YP_007111889.1 | NC_019713_p43 | tail tape measure protein | phrog_32885 | tail length tape measure protein | tail | 1 | 25705 | 28551 |
| YP_007111874.1 | NC_019713_p28 | hypothetical protein | phrog_28710 | unknown function | unknown function | 1 | 13614 | 14267 |
| YP_007111948.1 | NC_019713_p102 | hypothetical protein | phrog_34008 | unknown function | unknown function | 1 | 74450 | 74773 |
| YP_007111847.1 | NC_019713_p1 | hypothetical protein | phrog_3377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 219 | 926 |
| YP_007111923.1 | NC_019713_p77 | RecA protein | phrog_97 | UvsX-like recombinase | other | 1 | 57103 | 58215 |
| YP_007111862.1 | NC_019713_p16 | transcriptional regulator | phrog_13512 | transcriptional regulator | transcription regulation | 1 | 6842 | 7375 |
| YP_007111870.1 | NC_019713_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11660 | 12148 |
| YP_007111900.1 | NC_019713_p54 | hypothetical protein | phrog_1152 | Rz-like spanin | lysis | 1 | 37166 | 37660 |
| YP_007111899.1 | NC_019713_p53 | protein containing transglycosylase domain | phrog_669 | endolysin | lysis | 1 | 36520 | 37110 |
| YP_007111855.1 | NC_019713_p9 | hypothetical protein | phrog_30130 | unknown function | unknown function | 1 | 3161 | 3946 |
| YP_007111887.1 | NC_019713_p41 | hypothetical protein | phrog_3817 | tail chaperonin | tail | 1 | 24886 | 25275 |
| YP_007111941.1 | NC_019713_p95 | hypothetical protein | phrog_36123 | unknown function | unknown function | 1 | 71625 | 71777 |
| YP_007111933.1 | NC_019713_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66602 | 66775 |
| YP_007111876.1 | NC_019713_p30 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 14745 | 16052 |
| YP_007111853.1 | NC_019713_p7 | hypothetical protein | phrog_31012 | unknown function | unknown function | 1 | 2354 | 2641 |
| YP_007111951.1 | NC_019713_p105 | hypothetical protein | phrog_7744 | unknown function | unknown function | 1 | 76445 | 76627 |
| YP_007111902.1 | NC_019713_p56 | hypothetical protein | phrog_30562 | unknown function | unknown function | 1 | 37838 | 38146 |
| YP_007111943.1 | NC_019713_p97 | hypothetical protein | phrog_32809 | unknown function | unknown function | 1 | 72284 | 72760 |
| YP_007111848.1 | NC_019713_p2 | hypothetical protein | phrog_35364 | unknown function | unknown function | 1 | 931 | 1152 |
| YP_007111939.1 | NC_019713_p93 | hypothetical protein | phrog_32725 | unknown function | unknown function | 1 | 69963 | 70283 |
| YP_007111892.1 | NC_019713_p46 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 30305 | 31981 |
| YP_007111865.1 | NC_019713_p19 | hypothetical protein | phrog_31498 | unknown function | unknown function | 1 | 8167 | 8463 |
| YP_007111867.1 | NC_019713_p21 | hypothetical protein | phrog_29118 | unknown function | unknown function | 1 | 9134 | 9535 |
| YP_007111938.1 | NC_019713_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69179 | 69889 |
| YP_007111886.1 | NC_019713_p40 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 24431 | 24886 |
| YP_007111868.1 | NC_019713_p22 | hypothetical protein | phrog_16185 | tail protein | tail | 1 | 9624 | 9968 |
| YP_007111898.1 | NC_019713_p52 | hypothetical protein | phrog_37365 | unknown function | unknown function | 1 | 36315 | 36596 |
| YP_007111859.1 | NC_019713_p13 | hypothetical protein | phrog_30691 | unknown function | unknown function | 1 | 5852 | 6328 |
| YP_007111905.1 | NC_019713_p59 | hypothetical protein | phrog_29221 | unknown function | unknown function | 1 | 40056 | 40478 |
| YP_007111920.1 | NC_019713_p74 | hypothetical protein | phrog_35953 | unknown function | unknown function | 1 | 55060 | 55200 |
| YP_007111942.1 | NC_019713_p96 | hypothetical protein | phrog_29806 | unknown function | unknown function | 1 | 71877 | 72269 |
| YP_007111875.1 | NC_019713_p29 | HNH endonuclease | phrog_33554 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14376 | 14720 |
| YP_007111877.1 | NC_019713_p31 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 16065 | 17609 |
| YP_007111927.1 | NC_019713_p81 | SbcC type exonuclease | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60376 | 62232 |
| YP_007111909.1 | NC_019713_p63 | hypothetical protein | phrog_631 | unknown function | unknown function | 1 | 44448 | 45062 |
| YP_007111852.1 | NC_019713_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2094 | 2357 |
| YP_007111903.1 | NC_019713_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38149 | 39231 |
| YP_007111858.1 | NC_019713_p12 | DNA ligase | phrog_2561 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 5254 | 5745 |
| YP_007111916.1 | NC_019713_p70 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 50073 | 52727 |
| YP_007111896.1 | NC_019713_p50 | hypothetical protein | phrog_1101 | tail protein | tail | 1 | 33279 | 35837 |
| YP_007111952.1 | NC_019713_p106 | hypothetical protein | phrog_38265 | unknown function | unknown function | 1 | 76629 | 76844 |
| YP_007111882.1 | NC_019713_p36 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 21525 | 22067 |
| YP_007111931.1 | NC_019713_p85 | hypothetical protein | phrog_7203 | unknown function | unknown function | 1 | 64999 | 65688 |
| YP_007111921.1 | NC_019713_p75 | hypothetical protein | phrog_34306 | unknown function | unknown function | 1 | 55200 | 56363 |
| YP_007111849.1 | NC_019713_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1154 | 1513 |
| YP_007111946.1 | NC_019713_p100 | hypothetical protein | phrog_28163 | unknown function | unknown function | 1 | 73397 | 73774 |
| YP_007111915.1 | NC_019713_p69 | beta clamp protein | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 49012 | 50070 |
| YP_007111861.1 | NC_019713_p15 | hypothetical protein | phrog_36518 | unknown function | unknown function | 1 | 6534 | 6758 |
| YP_007111922.1 | NC_019713_p76 | thymidylate kinase | phrog_761 | thymidylate kinase | other | 1 | 56439 | 57074 |
| YP_007111891.1 | NC_019713_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29418 | 30305 |
| YP_007111925.1 | NC_019713_p79 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 58797 | 59387 |
| YP_007111932.1 | NC_019713_p86 | hypothetical protein | phrog_33526 | unknown function | unknown function | 1 | 65762 | 66478 |
| YP_007111884.1 | NC_019713_p38 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 22468 | 22887 |
| YP_007111878.1 | NC_019713_p32 | hypothetical protein | phrog_241 | head morphogenesis | head and packaging | 1 | 17609 | 18727 |
| YP_007111864.1 | NC_019713_p18 | hypothetical protein | phrog_31906 | unknown function | unknown function | 1 | 7803 | 8138 |
| YP_007111890.1 | NC_019713_p44 | hypothetical protein | phrog_687 | structural protein | head and packaging | 1 | 28555 | 29376 |
| YP_007111866.1 | NC_019713_p20 | hypothetical protein | phrog_799 | DNA methyltransferase | other | 1 | 8479 | 9129 |
| YP_007111910.1 | NC_019713_p64 | hypothetical protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 45059 | 46183 |
| YP_007111897.1 | NC_019713_p51 | hypothetical protein | phrog_29340 | unknown function | unknown function | 1 | 35893 | 36312 |