| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019718 |
Definition |
Enterobacteria phage vB_EcoS_Rogue1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Rogunavirinae; Rogunavirus. |
DB of origin |
REFSEQ |
Length |
45805 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
74 |
%GC |
44.21 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007112256.1 | NC_019718_p54 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 37505 | 37630 |
| YP_007112253.1 | NC_019718_p51 | hypothetical protein | phrog_6031 | unknown function | unknown function | 1 | 36821 | 37015 |
| YP_007112214.1 | NC_019718_p12 | hypothetical protein | phrog_10885 | unknown function | unknown function | 1 | 2917 | 3111 |
| YP_007112276.1 | NC_019718_p74 | hypothetical protein | phrog_14327 | unknown function | unknown function | -1 | 45474 | 45668 |
| YP_007112258.1 | NC_019718_p56 | hypothetical protein | phrog_4596 | unknown function | unknown function | 1 | 37863 | 38120 |
| YP_007112227.1 | NC_019718_p25 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 12916 | 13317 |
| YP_007112237.1 | NC_019718_p35 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 19655 | 20419 |
| YP_007112219.1 | NC_019718_p17 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 5894 | 7168 |
| YP_007112203.1 | NC_019718_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66 | 260 |
| YP_007112262.1 | NC_019718_p60 | hypothetical protein | phrog_10052 | unknown function | unknown function | 1 | 39930 | 40118 |
| YP_007112242.1 | NC_019718_p40 | hypothetical protein | phrog_4281 | unknown function | unknown function | -1 | 26183 | 26428 |
| YP_007112231.1 | NC_019718_p29 | major tail protein | phrog_584 | major tail protein | tail | 1 | 14506 | 15156 |
| YP_007112209.1 | NC_019718_p7 | hypothetical protein | phrog_16612 | unknown function | unknown function | 1 | 1619 | 1735 |
| YP_007112235.1 | NC_019718_p33 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 18981 | 19331 |
| YP_007112224.1 | NC_019718_p22 | major capsid protein | phrog_264 | major head protein | head and packaging | 1 | 11101 | 12048 |
| YP_007112267.1 | NC_019718_p65 | hypothetical protein | phrog_2794 | unknown function | unknown function | -1 | 41516 | 41851 |
| YP_007112225.1 | NC_019718_p23 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12112 | 12597 |
| YP_007112233.1 | NC_019718_p31 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 15607 | 15861 |
| YP_007112269.1 | NC_019718_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43582 | 43794 |
| YP_007112216.1 | NC_019718_p14 | hypothetical protein | phrog_2919 | unknown function | unknown function | 1 | 3479 | 3664 |
| YP_007112208.1 | NC_019718_p6 | hypothetical protein | phrog_12148 | unknown function | unknown function | 1 | 1539 | 1634 |
| YP_007112213.1 | NC_019718_p11 | fusion protein | phrog_303 | unknown function | unknown function | 1 | 2547 | 2924 |
| YP_007112254.1 | NC_019718_p52 | hypothetical protein | phrog_2676 | unknown function | unknown function | 1 | 37015 | 37233 |
| YP_007112239.1 | NC_019718_p37 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 21156 | 21722 |
| YP_007112228.1 | NC_019718_p26 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 13314 | 13682 |
| YP_007112243.1 | NC_019718_p41 | hypothetical protein | phrog_8235 | anti-repressor | transcription regulation | 1 | 27017 | 27646 |
| YP_007112272.1 | NC_019718_p70 | hypothetical protein | phrog_12926 | unknown function | unknown function | -1 | 44525 | 44827 |
| YP_007112232.1 | NC_019718_p30 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 15230 | 15544 |
| YP_007112247.1 | NC_019718_p45 | single-stranded DNA binding protein Ssb | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29638 | 30060 |
| YP_007112260.1 | NC_019718_p58 | hypothetical protein | phrog_19819 | unknown function | unknown function | 1 | 39471 | 39668 |
| YP_007112275.1 | NC_019718_p73 | hypothetical protein | phrog_9053 | unknown function | unknown function | -1 | 45305 | 45484 |
| YP_007112271.1 | NC_019718_p69 | hypothetical protein | phrog_2684 | unknown function | unknown function | -1 | 44146 | 44499 |
| YP_007112210.1 | NC_019718_p8 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 1753 | 2052 |
| YP_007112246.1 | NC_019718_p44 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 28943 | 29590 |
| YP_007112245.1 | NC_019718_p43 | exodeoxyribonuclease VIII | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 27918 | 28886 |
| YP_007112263.1 | NC_019718_p61 | hypothetical protein | phrog_4788 | unknown function | unknown function | 1 | 40131 | 40304 |
| YP_007112229.1 | NC_019718_p27 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 13675 | 14103 |
| YP_007112220.1 | NC_019718_p18 | head morphogenesis protein | phrog_324 | head morphogenesis | head and packaging | 1 | 7128 | 7892 |
| YP_007112252.1 | NC_019718_p50 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 36373 | 36762 |
| YP_007112223.1 | NC_019718_p21 | hypothetical protein | phrog_5073 | tail fiber protein | tail | 1 | 9564 | 11009 |
| YP_007112249.1 | NC_019718_p47 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 32888 | 33811 |
| YP_007112238.1 | NC_019718_p36 | minor tail protein | phrog_30 | minor tail protein | tail | 1 | 20429 | 21175 |
| YP_007112265.1 | NC_019718_p63 | endolysin | phrog_7 | endolysin | lysis | 1 | 40634 | 41116 |
| YP_007112222.1 | NC_019718_p20 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 9003 | 9470 |
| YP_007112274.1 | NC_019718_p72 | hypothetical protein | phrog_4448 | unknown function | unknown function | -1 | 45055 | 45294 |
| YP_007112270.1 | NC_019718_p68 | hypothetical protein | phrog_926 | unknown function | unknown function | -1 | 43940 | 44149 |
| YP_007112217.1 | NC_019718_p15 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 3764 | 4279 |
| YP_007112230.1 | NC_019718_p28 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 14093 | 14491 |
| YP_007112240.1 | NC_019718_p38 | tail fiber | phrog_31 | central tail fiber J | tail | 1 | 21803 | 25189 |
| YP_007112248.1 | NC_019718_p46 | tail fiber | phrog_4818 | tail fiber protein | tail | -1 | 30092 | 32809 |
| YP_007112218.1 | NC_019718_p16 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 4300 | 5844 |
| YP_007112259.1 | NC_019718_p57 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 38272 | 39405 |
| YP_007112261.1 | NC_019718_p59 | hypothetical protein | phrog_7411 | unknown function | unknown function | 1 | 39745 | 39930 |
| YP_007112212.1 | NC_019718_p10 | hypothetical protein | phrog_11452 | unknown function | unknown function | 1 | 2250 | 2543 |
| YP_007112268.1 | NC_019718_p66 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 41856 | 43439 |
| YP_007112257.1 | NC_019718_p55 | hypothetical protein | phrog_2817 | unknown function | unknown function | 1 | 37627 | 37866 |
| YP_007112206.1 | NC_019718_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1103 | 1189 |
| YP_007112255.1 | NC_019718_p53 | hypothetical protein | phrog_3249 | unknown function | unknown function | 1 | 37230 | 37430 |
| YP_007112204.1 | NC_019718_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 420 | 542 |
| YP_007112250.1 | NC_019718_p48 | transcriptional regulator | phrog_2856 | transcriptional regulator | transcription regulation | -1 | 33864 | 34337 |
| YP_007112273.1 | NC_019718_p71 | hypothetical protein | phrog_4548 | unknown function | unknown function | -1 | 44902 | 45054 |
| YP_007112234.1 | NC_019718_p32 | tail tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 15896 | 18949 |
| YP_007112205.1 | NC_019718_p3 | hypothetical protein | phrog_4841 | unknown function | unknown function | 1 | 561 | 1103 |
| YP_007112221.1 | NC_019718_p19 | hypothetical protein | phrog_530 | head maturation protease | head and packaging | 1 | 7882 | 8991 |
| YP_007112236.1 | NC_019718_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19404 | 19535 |
| YP_007112226.1 | NC_019718_p24 | hypothetical protein | phrog_2716 | unknown function | unknown function | 1 | 12626 | 12871 |
| YP_007112207.1 | NC_019718_p5 | hypothetical protein | phrog_8335 | unknown function | unknown function | 1 | 1225 | 1500 |
| YP_007112241.1 | NC_019718_p39 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 25221 | 26183 |
| YP_007112211.1 | NC_019718_p9 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 2125 | 2253 |
| YP_007112251.1 | NC_019718_p49 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 34430 | 36373 |
| YP_007112266.1 | NC_019718_p64 | Rz1 protein | phrog_1804 | Rz-like spanin | lysis | 1 | 41098 | 41502 |
| YP_007112215.1 | NC_019718_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3249 | 3371 |
| YP_007112264.1 | NC_019718_p62 | holin | phrog_2877 | holin | lysis | 1 | 40419 | 40634 |
| YP_007112244.1 | NC_019718_p42 | hypothetical protein | phrog_5247 | unknown function | unknown function | 1 | 27720 | 27914 |