| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019782 |
Definition |
Lactobacillus phage AQ113, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae. |
DB of origin |
REFSEQ |
Length |
36566 |
Host Name |
Lactobacillus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
56 |
%GC |
36.52 |
Number of singletons |
8 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007173653.1 | NC_019782_p55 | phage transcriptional regulator, ArpU family | phrog_248 | transcriptional activator | transcription regulation | 1 | 35692 | 36132 |
| YP_007173623.1 | NC_019782_p25 | hypothetical protein | phrog_12519 | unknown function | unknown function | 1 | 17301 | 19031 |
| YP_007173611.1 | NC_019782_p13 | hypothetical protein | phrog_966 | unknown function | unknown function | 1 | 7229 | 7432 |
| YP_007173614.1 | NC_019782_p16 | phage XkdN-like protein | phrog_389 | tail protein XkdN-like | tail | 1 | 9393 | 9809 |
| YP_007173615.1 | NC_019782_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 10058 | 12304 |
| YP_007173642.1 | NC_019782_p44 | hypothetical protein | phrog_7634 | unknown function | unknown function | 1 | 30112 | 30399 |
| YP_007173613.1 | NC_019782_p15 | sheat tail protein | phrog_365 | tail protein | tail | 1 | 8908 | 9381 |
| YP_007173603.1 | NC_019782_p5 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 2479 | 3615 |
| YP_007173643.1 | NC_019782_p45 | ERF Recombinase | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 30399 | 31043 |
| YP_007173610.1 | NC_019782_p12 | hypothetical protein | phrog_525 | unknown function | unknown function | 1 | 6835 | 7260 |
| YP_007173625.1 | NC_019782_p27 | phage related protein | phrog_8791 | unknown function | unknown function | 1 | 19496 | 20092 |
| YP_007173618.1 | NC_019782_p20 | phage late control gene D protein GPD | phrog_400 | tail protein | tail | 1 | 13595 | 14662 |
| YP_007173609.1 | NC_019782_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6310 | 6492 |
| YP_007173651.1 | NC_019782_p53 | phage protein-Restriction nuclease superfamily | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34941 | 35324 |
| YP_007173647.1 | NC_019782_p49 | single-strand DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33516 | 33941 |
| YP_007173645.1 | NC_019782_p47 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 31925 | 32725 |
| YP_007173641.1 | NC_019782_p43 | prophage protein | phrog_25327 | unknown function | unknown function | 1 | 29730 | 30101 |
| YP_007173649.1 | NC_019782_p51 | hypothetical protein | phrog_30614 | unknown function | unknown function | 1 | 34490 | 34663 |
| YP_007173630.1 | NC_019782_p32 | endolysin | phrog_291 | endolysin | lysis | 1 | 21514 | 22689 |
| YP_007173650.1 | NC_019782_p52 | hypothetical protein | phrog_3999 | unknown function | unknown function | 1 | 34679 | 34969 |
| YP_007173624.1 | NC_019782_p26 | hypothetical protein | phrog_21569 | unknown function | unknown function | 1 | 19047 | 19430 |
| YP_007173606.1 | NC_019782_p8 | phage minor structural protein GP20 | phrog_194 | head scaffolding protein | head and packaging | 1 | 4294 | 4833 |
| YP_007173629.1 | NC_019782_p31 | hypothetical protein | phrog_8444 | unknown function | unknown function | 1 | 21116 | 21505 |
| YP_007173636.1 | NC_019782_p38 | Cro-like protein phage associated | phrog_3 | transcriptional repressor | transcription regulation | 1 | 27531 | 27746 |
| YP_007173637.1 | NC_019782_p39 | prophage antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 27851 | 28639 |
| YP_007173601.1 | NC_019782_p3 | phage terminase large subunit B | singleton | unknown function | unknown function | 1 | 1365 | 1775 |
| YP_007173627.1 | NC_019782_p29 | hypothetical protein | phrog_3671 | unknown function | unknown function | 1 | 20687 | 20896 |
| YP_007173600.1 | NC_019782_p2 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 600 | 1232 |
| YP_007173638.1 | NC_019782_p40 | hypothetical protein | phrog_35633 | unknown function | unknown function | 1 | 28795 | 28974 |
| YP_007173640.1 | NC_019782_p42 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29195 | 29725 |
| YP_007173628.1 | NC_019782_p30 | hypothetical protein | phrog_13165 | unknown function | unknown function | 1 | 20880 | 21107 |
| YP_007173648.1 | NC_019782_p50 | hypothetical protein | phrog_30848 | unknown function | unknown function | 1 | 34001 | 34471 |
| YP_007173612.1 | NC_019782_p14 | phage sheath tail protein | phrog_279 | tail sheath | tail | 1 | 7436 | 8896 |
| YP_007173607.1 | NC_019782_p9 | phage major capsid protein | phrog_422 | major head protein | head and packaging | 1 | 4848 | 5924 |
| YP_007173622.1 | NC_019782_p24 | hypothetical protein | phrog_521 | tail protein | tail | 1 | 16546 | 17115 |
| YP_007173654.1 | NC_019782_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36372 | 36521 |
| YP_007173634.1 | NC_019782_p36 | phosphoadenosine phosphosulfate reductase | phrog_2302 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 25079 | 26380 |
| YP_007173626.1 | NC_019782_p28 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 20106 | 20294 |
| YP_007173632.1 | NC_019782_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23610 | 23939 |
| YP_007173604.1 | NC_019782_p6 | minor head protein | singleton | unknown function | unknown function | 1 | 3651 | 3986 |
| YP_007173644.1 | NC_019782_p46 | DNA replication protein | phrog_1163 | unknown function | unknown function | 1 | 31054 | 31890 |
| YP_007173602.1 | NC_019782_p4 | phage terminase large subunit B | phrog_5653 | terminase large subunit | head and packaging | 1 | 1929 | 2528 |
| YP_007173635.1 | NC_019782_p37 | co-activator of prophage gene expression | phrog_2159 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 26286 | 26876 |
| YP_007173616.1 | NC_019782_p18 | minor tail protein gp26-like | singleton | unknown function | unknown function | 1 | 12421 | 12894 |
| YP_007173652.1 | NC_019782_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35431 | 35574 |
| YP_007173639.1 | NC_019782_p41 | hypothetical protein | phrog_35091 | unknown function | unknown function | 1 | 28988 | 29149 |
| YP_007173599.1 | NC_019782_p1 | phage terminase small subunit | phrog_7344 | terminase small subunit | head and packaging | 1 | 1 | 489 |
| YP_007173631.1 | NC_019782_p33 | hypothetical protein | phrog_711 | unknown function | unknown function | 1 | 22909 | 23610 |
| YP_007173621.1 | NC_019782_p23 | baseplate J-like protein | phrog_6 | baseplate wedge subunit | tail | 1 | 15408 | 16553 |
| YP_007173619.1 | NC_019782_p21 | hypothetical protein | phrog_579 | unknown function | unknown function | 1 | 14635 | 14979 |
| YP_007173608.1 | NC_019782_p10 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 5942 | 6313 |
| YP_007173633.1 | NC_019782_p35 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 23920 | 25089 |
| YP_007173605.1 | NC_019782_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3997 | 4185 |
| YP_007173620.1 | NC_019782_p22 | phage protein DUF2634 superfamily | phrog_120 | baseplate wedge subunit | tail | 1 | 15005 | 15418 |
| YP_007173617.1 | NC_019782_p19 | LysM-like protein | phrog_380 | endolysin | lysis | 1 | 12901 | 13602 |
| YP_007173646.1 | NC_019782_p48 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | 1 | 32727 | 33083 |