| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_019911 |
Definition |
Yersinia phage phi80-18 complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Pokrovskaiavirus; Yersinia virus Phi80-18. |
DB of origin |
REFSEQ |
Length |
42081 |
Host Name |
Yersinia enterocolitica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
47.61 |
Number of singletons |
4 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_007236335.1 | NC_019911_p32 | hypothetical protein | phrog_34512 | unknown function | unknown function | 1 | 16983 | 17159 |
| YP_007236317.1 | NC_019911_p14 | hypothetical protein | phrog_11140 | unknown function | unknown function | 1 | 5864 | 6058 |
| YP_007236336.1 | NC_019911_p33 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 17140 | 17787 |
| YP_007236350.1 | NC_019911_p47 | tail fiber protein 2 | phrog_13173 | tail fiber protein | tail | 1 | 35101 | 37110 |
| YP_007236355.1 | NC_019911_p52 | glycoside hydrolase family protein | phrog_7 | endolysin | lysis | 1 | 40022 | 40576 |
| YP_007236342.1 | NC_019911_p39 | head portal-like protein | phrog_449 | head-tail adaptor | connector | 1 | 21511 | 23016 |
| YP_007236357.1 | NC_019911_p54 | hypothetical protein | phrog_13582 | unknown function | unknown function | 1 | 40805 | 41098 |
| YP_007236347.1 | NC_019911_p44 | hypothetical protein | phrog_5745 | internal virion protein | head and packaging | 1 | 28221 | 28988 |
| YP_007236356.1 | NC_019911_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40555 | 40935 |
| YP_007236304.1 | NC_019911_p1 | hypothetical protein | phrog_9286 | unknown function | unknown function | 1 | 29 | 379 |
| YP_007236346.1 | NC_019911_p43 | tail tuber protein B | phrog_457 | tail protein | tail | 1 | 25610 | 28219 |
| YP_007236313.1 | NC_019911_p10 | hypothetical protein | phrog_10858 | unknown function | unknown function | 1 | 5012 | 5245 |
| YP_007236326.1 | NC_019911_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9643 | 10035 |
| YP_007236322.1 | NC_019911_p19 | hypothetical protein | phrog_6570 | unknown function | unknown function | 1 | 8351 | 8572 |
| YP_007236351.1 | NC_019911_p48 | hypothetical protein | phrog_920 | holin | lysis | 1 | 37125 | 37328 |
| YP_007236358.1 | NC_019911_p55 | hypothetical protein | phrog_13582 | unknown function | unknown function | 1 | 40916 | 41098 |
| YP_007236352.1 | NC_019911_p49 | hypothetical protein | phrog_9441 | terminase small subunit | head and packaging | 1 | 37309 | 37647 |
| YP_007236330.1 | NC_019911_p27 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 13451 | 14275 |
| YP_007236307.1 | NC_019911_p4 | hypothetical protein | phrog_6379 | unknown function | unknown function | 1 | 1744 | 2037 |
| YP_007236325.1 | NC_019911_p22 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 8937 | 9896 |
| YP_007236344.1 | NC_019911_p41 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23900 | 24916 |
| YP_007236343.1 | NC_019911_p40 | scaffolding-like protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 23019 | 23825 |
| YP_007236320.1 | NC_019911_p17 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 6975 | 8219 |
| YP_007236319.1 | NC_019911_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6859 | 6981 |
| YP_007236349.1 | NC_019911_p46 | transglycosylase | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 31252 | 35031 |
| YP_007236333.1 | NC_019911_p30 | DNA endonuclease VII | phrog_11865 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 15709 | 16017 |
| YP_007236316.1 | NC_019911_p13 | hypothetical protein | phrog_5965 | unknown function | unknown function | 1 | 5611 | 5862 |
| YP_007236311.1 | NC_019911_p8 | hypothetical protein | phrog_29534 | unknown function | unknown function | 1 | 4177 | 4530 |
| YP_007236340.1 | NC_019911_p37 | hypothetical protein | phrog_6529 | unknown function | unknown function | 1 | 20928 | 21323 |
| YP_007236305.1 | NC_019911_p2 | hypothetical protein LIMEzero_ORF02 | phrog_1448 | unknown function | unknown function | 1 | 953 | 1510 |
| YP_007236334.1 | NC_019911_p31 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 16017 | 16982 |
| YP_007236306.1 | NC_019911_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1507 | 1698 |
| YP_007236348.1 | NC_019911_p45 | hypothetical protein | phrog_3883 | internal virion protein | head and packaging | 1 | 28999 | 31248 |
| YP_007236308.1 | NC_019911_p5 | hypothetical protein | phrog_29589 | unknown function | unknown function | 1 | 2784 | 3593 |
| YP_007236339.1 | NC_019911_p36 | hypothetical protein | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20503 | 20928 |
| YP_007236341.1 | NC_019911_p38 | hypothetical protein | phrog_31770 | unknown function | unknown function | 1 | 21323 | 21502 |
| YP_007236312.1 | NC_019911_p9 | hypothetical protein | phrog_9577 | unknown function | unknown function | 1 | 4530 | 5012 |
| YP_007236323.1 | NC_019911_p20 | hypothetical protein | phrog_14146 | unknown function | unknown function | 1 | 8565 | 8747 |
| YP_007236329.1 | NC_019911_p26 | hypothetical protein | phrog_30786 | unknown function | unknown function | 1 | 13243 | 13434 |
| YP_007236353.1 | NC_019911_p50 | TerL large terminase subunit-like protein | phrog_38 | terminase large subunit | head and packaging | 1 | 37647 | 39551 |
| YP_007236324.1 | NC_019911_p21 | hypothetical protein | phrog_27256 | unknown function | unknown function | 1 | 8740 | 8937 |
| YP_007236338.1 | NC_019911_p35 | hypothetical protein | phrog_5112 | unknown function | unknown function | 1 | 20345 | 20506 |
| YP_007236318.1 | NC_019911_p15 | DNA primase | phrog_8634 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 6074 | 6790 |
| YP_007236345.1 | NC_019911_p42 | tail tuber protein A | phrog_446 | tail protein | tail | 1 | 25013 | 25606 |
| YP_007236315.1 | NC_019911_p12 | hypothetical protein | phrog_33501 | unknown function | unknown function | 1 | 5463 | 5597 |
| YP_007236309.1 | NC_019911_p6 | hypothetical protein | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 3590 | 3982 |
| YP_007236328.1 | NC_019911_p25 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10790 | 13243 |
| YP_007236314.1 | NC_019911_p11 | hypothetical protein | phrog_10858 | unknown function | unknown function | 1 | 5242 | 5466 |
| YP_007236321.1 | NC_019911_p18 | hypothetical protein | phrog_28767 | unknown function | unknown function | 1 | 8236 | 8364 |
| YP_007236332.1 | NC_019911_p29 | hypothetical protein | phrog_9561 | unknown function | unknown function | 1 | 15270 | 15695 |
| YP_007236331.1 | NC_019911_p28 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14275 | 15273 |
| YP_007236354.1 | NC_019911_p51 | hypothetical protein | phrog_10357 | recombinase | other | 1 | 39579 | 39986 |
| YP_007236327.1 | NC_019911_p24 | nucleotidyl transferase | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 10013 | 10777 |
| YP_007236337.1 | NC_019911_p34 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17798 | 20251 |
| YP_007236310.1 | NC_019911_p7 | hypothetical protein | phrog_13874 | unknown function | unknown function | 1 | 3963 | 4193 |