Genomic map of Yersinia phage phi80-18 (NC_019911)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019911
Definition
Yersinia phage phi80-18 complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Melnykvirinae; Pokrovskaiavirus; Yersinia virus Phi80-18.
DB of origin
REFSEQ
Length
42081
Host Name
Yersinia enterocolitica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
47.61
Number of singletons
4
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007236335.1 NC_019911_p32 hypothetical protein phrog_34512 unknown function unknown function 1 16983 17159
YP_007236317.1 NC_019911_p14 hypothetical protein phrog_11140 unknown function unknown function 1 5864 6058
YP_007236336.1 NC_019911_p33 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 17140 17787
YP_007236350.1 NC_019911_p47 tail fiber protein 2 phrog_13173 tail fiber protein tail 1 35101 37110
YP_007236355.1 NC_019911_p52 glycoside hydrolase family protein phrog_7 endolysin lysis 1 40022 40576
YP_007236342.1 NC_019911_p39 head portal-like protein phrog_449 head-tail adaptor connector 1 21511 23016
YP_007236357.1 NC_019911_p54 hypothetical protein phrog_13582 unknown function unknown function 1 40805 41098
YP_007236347.1 NC_019911_p44 hypothetical protein phrog_5745 internal virion protein head and packaging 1 28221 28988
YP_007236356.1 NC_019911_p53 hypothetical protein singleton unknown function unknown function 1 40555 40935
YP_007236304.1 NC_019911_p1 hypothetical protein phrog_9286 unknown function unknown function 1 29 379
YP_007236346.1 NC_019911_p43 tail tuber protein B phrog_457 tail protein tail 1 25610 28219
YP_007236313.1 NC_019911_p10 hypothetical protein phrog_10858 unknown function unknown function 1 5012 5245
YP_007236326.1 NC_019911_p23 hypothetical protein singleton unknown function unknown function 1 9643 10035
YP_007236322.1 NC_019911_p19 hypothetical protein phrog_6570 unknown function unknown function 1 8351 8572
YP_007236351.1 NC_019911_p48 hypothetical protein phrog_920 holin lysis 1 37125 37328
YP_007236358.1 NC_019911_p55 hypothetical protein phrog_13582 unknown function unknown function 1 40916 41098
YP_007236352.1 NC_019911_p49 hypothetical protein phrog_9441 terminase small subunit head and packaging 1 37309 37647
YP_007236330.1 NC_019911_p27 hypothetical protein phrog_862 unknown function unknown function 1 13451 14275
YP_007236307.1 NC_019911_p4 hypothetical protein phrog_6379 unknown function unknown function 1 1744 2037
YP_007236325.1 NC_019911_p22 ATP-dependent DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 8937 9896
YP_007236344.1 NC_019911_p41 major capsid protein phrog_267 major head protein head and packaging 1 23900 24916
YP_007236343.1 NC_019911_p40 scaffolding-like protein phrog_1018 head scaffolding protein head and packaging 1 23019 23825
YP_007236320.1 NC_019911_p17 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 6975 8219
YP_007236319.1 NC_019911_p16 hypothetical protein singleton unknown function unknown function 1 6859 6981
YP_007236349.1 NC_019911_p46 transglycosylase phrog_342 internal virion protein with endolysin domain head and packaging 1 31252 35031
YP_007236333.1 NC_019911_p30 DNA endonuclease VII phrog_11865 endonuclease VII DNA, RNA and nucleotide metabolism 1 15709 16017
YP_007236316.1 NC_019911_p13 hypothetical protein phrog_5965 unknown function unknown function 1 5611 5862
YP_007236311.1 NC_019911_p8 hypothetical protein phrog_29534 unknown function unknown function 1 4177 4530
YP_007236340.1 NC_019911_p37 hypothetical protein phrog_6529 unknown function unknown function 1 20928 21323
YP_007236305.1 NC_019911_p2 hypothetical protein LIMEzero_ORF02 phrog_1448 unknown function unknown function 1 953 1510
YP_007236334.1 NC_019911_p31 hypothetical protein phrog_221 metallo-phosphoesterase other 1 16017 16982
YP_007236306.1 NC_019911_p3 hypothetical protein singleton unknown function unknown function 1 1507 1698
YP_007236348.1 NC_019911_p45 hypothetical protein phrog_3883 internal virion protein head and packaging 1 28999 31248
YP_007236308.1 NC_019911_p5 hypothetical protein phrog_29589 unknown function unknown function 1 2784 3593
YP_007236339.1 NC_019911_p36 hypothetical protein phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 20503 20928
YP_007236341.1 NC_019911_p38 hypothetical protein phrog_31770 unknown function unknown function 1 21323 21502
YP_007236312.1 NC_019911_p9 hypothetical protein phrog_9577 unknown function unknown function 1 4530 5012
YP_007236323.1 NC_019911_p20 hypothetical protein phrog_14146 unknown function unknown function 1 8565 8747
YP_007236329.1 NC_019911_p26 hypothetical protein phrog_30786 unknown function unknown function 1 13243 13434
YP_007236353.1 NC_019911_p50 TerL large terminase subunit-like protein phrog_38 terminase large subunit head and packaging 1 37647 39551
YP_007236324.1 NC_019911_p21 hypothetical protein phrog_27256 unknown function unknown function 1 8740 8937
YP_007236338.1 NC_019911_p35 hypothetical protein phrog_5112 unknown function unknown function 1 20345 20506
YP_007236318.1 NC_019911_p15 DNA primase phrog_8634 DNA primase DNA, RNA and nucleotide metabolism 1 6074 6790
YP_007236345.1 NC_019911_p42 tail tuber protein A phrog_446 tail protein tail 1 25013 25606
YP_007236315.1 NC_019911_p12 hypothetical protein phrog_33501 unknown function unknown function 1 5463 5597
YP_007236309.1 NC_019911_p6 hypothetical protein phrog_2226 SAM-dependent methyltransferase other 1 3590 3982
YP_007236328.1 NC_019911_p25 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 10790 13243
YP_007236314.1 NC_019911_p11 hypothetical protein phrog_10858 unknown function unknown function 1 5242 5466
YP_007236321.1 NC_019911_p18 hypothetical protein phrog_28767 unknown function unknown function 1 8236 8364
YP_007236332.1 NC_019911_p29 hypothetical protein phrog_9561 unknown function unknown function 1 15270 15695
YP_007236331.1 NC_019911_p28 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14275 15273
YP_007236354.1 NC_019911_p51 hypothetical protein phrog_10357 recombinase other 1 39579 39986
YP_007236327.1 NC_019911_p24 nucleotidyl transferase phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 10013 10777
YP_007236337.1 NC_019911_p34 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 17798 20251
YP_007236310.1 NC_019911_p7 hypothetical protein phrog_13874 unknown function unknown function 1 3963 4193