Genomic map of Pseudomonas phage PaP1 (NC_019913)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_019913
Definition
Pseudomonas phage PaP1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Pakpunavirus.
DB of origin
REFSEQ
Length
91715
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
167
%GC
49.36
Number of singletons
2
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_007236500.1 NC_019913_p97 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 55935 57797
YP_007236445.1 NC_019913_p35 hypothetical protein phrog_2251 unknown function unknown function -1 16367 16579
YP_007236440.1 NC_019913_p30 cell wall hydrolase phrog_938 endolysin lysis -1 13402 13962
YP_007236532.1 NC_019913_p129 hypothetical protein phrog_6974 unknown function unknown function 1 75756 76259
YP_007236516.1 NC_019913_p113 hypothetical protein phrog_7135 unknown function unknown function 1 67441 67623
YP_007236510.1 NC_019913_p107 hypothetical protein phrog_5822 unknown function unknown function 1 65261 65659
YP_007236531.1 NC_019913_p128 hypothetical protein phrog_6863 unknown function unknown function 1 75497 75736
YP_007236448.1 NC_019913_p38 hypothetical protein phrog_6991 unknown function unknown function -1 17185 17463
YP_007236486.1 NC_019913_p79 hypothetical protein phrog_4172 unknown function unknown function 1 47971 48276
YP_009047072.1 NC_019913_p82 hypothetical protein phrog_7083 unknown function unknown function -1 48987 49307
YP_007236465.1 NC_019913_p57 hypothetical protein phrog_939 head protein head and packaging 1 30401 30781
YP_007236553.1 NC_019913_p152 hypothetical protein phrog_6935 unknown function unknown function 1 85005 85397
YP_007236420.1 NC_019913_p9 hypothetical protein phrog_2614 unknown function unknown function -1 3215 3499
YP_007236536.1 NC_019913_p133 hypothetical protein phrog_6266 unknown function unknown function 1 77127 78113
YP_007236507.1 NC_019913_p104 hypothetical protein phrog_6983 unknown function unknown function 1 63389 63610
YP_007236547.1 NC_019913_p146 hypothetical protein phrog_7542 unknown function unknown function 1 83013 83438
YP_007236546.1 NC_019913_p144 hypothetical protein phrog_2554 unknown function unknown function 1 82071 82742
YP_007236418.1 NC_019913_p7 hypothetical protein phrog_7430 unknown function unknown function -1 2552 2863
YP_007236533.1 NC_019913_p130 hypothetical protein phrog_6846 unknown function unknown function 1 76269 76463
YP_007236412.1 NC_019913_p1 hypothetical protein phrog_8631 unknown function unknown function 1 287 445
YP_007236561.1 NC_019913_p160 hypothetical protein phrog_7753 unknown function unknown function 1 88436 88888
YP_007236494.1 NC_019913_p89 hypothetical protein phrog_7101 unknown function unknown function 1 53485 54141
YP_007236499.1 NC_019913_p96 hypothetical protein phrog_7863 unknown function unknown function 1 55696 55881
YP_007236496.1 NC_019913_p91 hypothetical protein phrog_4991 unknown function unknown function 1 54295 54597
YP_007236484.1 NC_019913_p77 hypothetical protein phrog_5847 holin lysis 1 47170 47409
YP_009047068.1 NC_019913_p39 hypothetical protein phrog_7048 unknown function unknown function -1 17460 17738
YP_007236568.1 NC_019913_p167 hypothetical protein phrog_953 HNH endonuclease DNA, RNA and nucleotide metabolism 1 90879 91481
YP_007236424.1 NC_019913_p14 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism -1 4997 5578
YP_007236524.1 NC_019913_p121 ribonucleoside-diphosphate reductase alpha chain phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 71940 73685
YP_007236442.2 NC_019913_p32 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 14497 15639
YP_007236505.1 NC_019913_p102 hypothetical protein phrog_2544 unknown function unknown function 1 62072 63076
YP_007236497.2 NC_019913_p92 hypothetical protein phrog_7141 unknown function unknown function 1 54598 55020
YP_007236461.1 NC_019913_p53 structural protein phrog_49 head decoration head and packaging 1 27936 28346
YP_007236463.1 NC_019913_p55 hypothetical protein phrog_1732 unknown function unknown function 1 29474 29950
YP_007236459.1 NC_019913_p51 N6 adenine-specific DNA methyltransferase phrog_1530 DNA methyltransferase other 1 26524 26994
YP_007236530.1 NC_019913_p127 hypothetical protein phrog_7233 unknown function unknown function 1 75266 75451
YP_009047067.1 NC_019913_p10 hypothetical protein phrog_7178 unknown function unknown function -1 3555 3770
YP_007236514.2 NC_019913_p111 hypothetical protein phrog_4305 unknown function unknown function 1 66486 66668
YP_007236451.1 NC_019913_p42 hypothetical protein phrog_6961 unknown function unknown function -1 18180 18365
YP_009047076.1 NC_019913_p145 hypothetical protein phrog_5336 unknown function unknown function 1 82747 83085
YP_007236417.1 NC_019913_p6 hypothetical protein phrog_7742 unknown function unknown function -1 2286 2564
YP_007236560.1 NC_019913_p159 hypothetical protein phrog_6876 unknown function unknown function 1 88211 88381
YP_007236554.1 NC_019913_p153 hypothetical protein phrog_3303 unknown function unknown function 1 85512 86093
YP_009047075.1 NC_019913_p134 hypothetical protein singleton unknown function unknown function 1 78068 78511
YP_007236427.1 NC_019913_p17 hypothetical protein phrog_335 phosphatase other -1 6055 6534
YP_007236511.1 NC_019913_p108 hypothetical protein phrog_7621 unknown function unknown function 1 65680 65886
YP_007236566.1 NC_019913_p165 hypothetical protein phrog_24952 unknown function unknown function -1 89936 90067
YP_007236527.1 NC_019913_p124 hypothetical protein phrog_7088 unknown function unknown function 1 74370 74609
YP_007236413.1 NC_019913_p2 hypothetical protein phrog_7340 unknown function unknown function -1 499 765
YP_007236422.1 NC_019913_p12 hypothetical protein phrog_3360 unknown function unknown function -1 4110 4679
YP_007236504.1 NC_019913_p101 hypothetical protein phrog_6824 unknown function unknown function 1 61260 61970
YP_007236557.1 NC_019913_p156 hypothetical protein phrog_1106 unknown function unknown function 1 86806 87288
YP_007236549.1 NC_019913_p148 hypothetical protein phrog_6818 unknown function unknown function 1 83950 84144
YP_007236473.1 NC_019913_p66 hypothetical protein phrog_817 tail fiber protein tail 1 37253 38014
YP_007236452.1 NC_019913_p43 ClpP ATP-dependent protease subunit phrog_1827 ATP-dependent protease other -1 18426 18974
YP_007236462.1 NC_019913_p54 major capsid protein phrog_29 major head protein head and packaging 1 28390 29424
YP_007236423.1 NC_019913_p13 hypothetical protein phrog_6932 unknown function unknown function -1 4600 4977
YP_007236567.1 NC_019913_p166 hypothetical protein phrog_7991 unknown function unknown function -1 90557 90694
YP_007236469.2 NC_019913_p61 hypothetical protein phrog_280 virion structural protein head and packaging 1 33270 33776
YP_007236540.1 NC_019913_p138 hypothetical protein phrog_6871 unknown function unknown function 1 80114 80401
YP_007236470.1 NC_019913_p62 structural protein phrog_280 virion structural protein head and packaging 1 33769 34248
YP_009047071.1 NC_019913_p80 hypothetical protein phrog_3899 unknown function unknown function 1 48312 48626
YP_007236438.1 NC_019913_p28 hypothetical protein phrog_6781 unknown function unknown function -1 12419 12850
YP_007236419.1 NC_019913_p8 hypothetical protein phrog_2614 unknown function unknown function -1 2863 3225
YP_007236517.1 NC_019913_p114 hypothetical protein phrog_6873 unknown function unknown function 1 67643 67852
YP_007236522.1 NC_019913_p119 hypothetical protein phrog_3506 thymidylate synthase DNA, RNA and nucleotide metabolism 1 70495 70884
YP_007236415.1 NC_019913_p4 hypothetical protein phrog_6773 unknown function unknown function -1 1158 1460
YP_007236456.1 NC_019913_p48 hypothetical protein phrog_3900 unknown function unknown function 1 20635 20958
YP_007236429.1 NC_019913_p19 nicotinamide phosphoribosyl transferase family protein phrog_448 nicotinamide phosphoribosyl transferase other -1 6742 8430
YP_007236444.1 NC_019913_p34 hypothetical protein phrog_7094 unknown function unknown function -1 16121 16357
YP_007236564.1 NC_019913_p163 hypothetical protein phrog_4310 unknown function unknown function 1 89501 89695
YP_007236439.1 NC_019913_p29 metal dependent phosphohydrolase HD region phrog_990 metal-dependent phosphohydrolase other -1 12840 13400
YP_009047074.1 NC_019913_p95 hypothetical protein phrog_6115 unknown function unknown function 1 55454 55699
YP_007236446.1 NC_019913_p36 hypothetical protein phrog_5276 unknown function unknown function -1 16576 16845
YP_007236541.1 NC_019913_p139 hypothetical protein phrog_5289 unknown function unknown function 1 80302 80646
YP_007236453.1 NC_019913_p44 hypothetical protein phrog_5067 unknown function unknown function -1 19022 19378
YP_007236425.1 NC_019913_p15 hypothetical protein phrog_8023 unknown function unknown function -1 5575 5892
YP_007236538.1 NC_019913_p136 hypothetical protein phrog_5201 unknown function unknown function 1 79692 79958
YP_007236501.1 NC_019913_p98 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 57858 60572
YP_007236539.1 NC_019913_p137 hypothetical protein phrog_6353 unknown function unknown function 1 79971 80114
YP_007236562.1 NC_019913_p161 hypothetical protein phrog_3968 unknown function unknown function 1 88903 89133
YP_007236490.1 NC_019913_p85 RNA ligase phrog_968 RNA ligase DNA, RNA and nucleotide metabolism -1 50272 51408
YP_007236449.1 NC_019913_p40 hypothetical protein phrog_7505 unknown function unknown function -1 17773 17958
YP_007236478.1 NC_019913_p71 base plate related protein phrog_6 baseplate wedge subunit tail 1 40412 41875
YP_007236447.1 NC_019913_p37 hypothetical protein phrog_3948 unknown function unknown function -1 16854 17171
YP_007236443.1 NC_019913_p33 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 15702 16091
YP_007236489.1 NC_019913_p84 hypothetical protein phrog_7461 unknown function unknown function -1 50111 50269
YP_007236431.1 NC_019913_p21 phosphoribosylpyrophosphate synthetase phrog_619 ribose-phosphate pyrophosphokinase other -1 8702 9568
YP_007236518.1 NC_019913_p115 hypothetical protein phrog_6971 unknown function unknown function 1 67872 68207
YP_007236550.1 NC_019913_p149 hypothetical protein phrog_4261 unknown function unknown function 1 84162 84488
YP_007236555.1 NC_019913_p154 hypothetical protein phrog_6091 unknown function unknown function 1 86165 86410
YP_007236520.2 NC_019913_p117 hypothetical protein phrog_7063 3'-phosphatase, 5'-polynucleotide kinase other 1 68419 69369
YP_007236492.2 NC_019913_p87 hypothetical protein phrog_3754 unknown function unknown function 1 52324 52809
YP_007236454.1 NC_019913_p45 hypothetical protein phrog_5019 unknown function unknown function -1 19375 19842
YP_007236460.1 NC_019913_p52 hypothetical protein phrog_4103 unknown function unknown function 1 26991 27908
YP_007236563.1 NC_019913_p162 hypothetical protein phrog_5746 unknown function unknown function 1 89130 89417
YP_007236468.1 NC_019913_p60 structural protein phrog_280 virion structural protein head and packaging 1 32671 33195
YP_007236414.1 NC_019913_p3 hypothetical protein phrog_7262 unknown function unknown function -1 758 1168
YP_007236450.1 NC_019913_p41 hypothetical protein phrog_343 unknown function unknown function -1 17959 18183
YP_007236426.1 NC_019913_p16 hypothetical protein phrog_6391 unknown function unknown function -1 5894 6043
YP_007236436.1 NC_019913_p26 hypothetical protein phrog_5447 unknown function unknown function -1 11615 11872
YP_007236477.1 NC_019913_p70 hypothetical protein phrog_120 baseplate wedge subunit tail 1 40039 40410
YP_007236506.1 NC_019913_p103 hypothetical protein phrog_7883 unknown function unknown function 1 63146 63379
YP_007236528.1 NC_019913_p125 hypothetical protein phrog_7635 unknown function unknown function 1 74606 74881
YP_007236491.1 NC_019913_p86 hypothetical protein phrog_6163 unknown function unknown function 1 52124 52321
YP_007236457.1 NC_019913_p49 large terminase subunit phrog_979 terminase large subunit head and packaging 1 23542 25062
YP_007236519.2 NC_019913_p116 hypothetical protein phrog_7016 unknown function unknown function 1 68211 68426
YP_007236458.1 NC_019913_p50 structural protein phrog_113 portal protein head and packaging 1 25075 26514
YP_007236498.1 NC_019913_p94 hypothetical protein phrog_7814 unknown function unknown function 1 55253 55444
YP_007236434.1 NC_019913_p24 hypothetical protein phrog_944 membrane protein moron, auxiliary metabolic gene and host takeover -1 10934 11341
YP_007236552.1 NC_019913_p151 hypothetical protein phrog_4025 unknown function unknown function 1 84742 85008
YP_007236508.1 NC_019913_p105 exodeoxyribonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 63652 64704
YP_007236475.2 NC_019913_p68 hypothetical protein phrog_196 baseplate hub tail 1 38373 39290
YP_007236534.1 NC_019913_p131 hypothetical protein phrog_5041 unknown function unknown function 1 76465 76695
YP_007236487.1 NC_019913_p81 hypothetical protein phrog_2827 unknown function unknown function -1 48664 48975
YP_007236521.1 NC_019913_p118 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 69576 70538
YP_007236421.1 NC_019913_p11 hypothetical protein phrog_6967 unknown function unknown function -1 3767 4141
YP_007236537.1 NC_019913_p135 hypothetical protein phrog_3768 unknown function unknown function 1 79140 79616
YP_007236437.1 NC_019913_p27 phosphoesterase or phosphohydrolase phrog_547 phosphoesterase other -1 11853 12419
YP_007236482.1 NC_019913_p75 tail fiber protein phrog_2282 tail fiber protein tail 1 45076 46575
YP_007236565.1 NC_019913_p164 hypothetical protein phrog_13569 unknown function unknown function 1 89746 89883
YP_007236545.1 NC_019913_p143 hypothetical protein phrog_7133 unknown function unknown function 1 81612 81995
YP_007236512.1 NC_019913_p109 hypothetical protein phrog_7013 unknown function unknown function 1 65859 66320
YP_007236526.1 NC_019913_p123 hypothetical protein phrog_6898 unknown function unknown function 1 74136 74357
YP_007236474.1 NC_019913_p67 hypothetical protein phrog_349 virion structural protein head and packaging 1 38020 38376
YP_007236464.1 NC_019913_p56 RNA polymerase phrog_31120 unknown function unknown function 1 30129 30401
YP_007236559.1 NC_019913_p158 hypothetical protein phrog_6605 unknown function unknown function 1 87902 88183
YP_007236503.1 NC_019913_p100 hypothetical protein phrog_7532 unknown function unknown function 1 61091 61258
YP_007236430.2 NC_019913_p20 hypothetical protein phrog_7663 unknown function unknown function -1 8487 8705
YP_007236455.1 NC_019913_p47 hypothetical protein phrog_10364 unknown function unknown function 1 20304 20492
YP_007236548.1 NC_019913_p147 hypothetical protein phrog_5293 unknown function unknown function 1 83630 83902
YP_007236471.1 NC_019913_p63 structural protein phrog_1613 tail assembly chaperone tail 1 34262 34633
YP_009047070.1 NC_019913_p64 hypothetical protein phrog_4625 unknown function unknown function 1 34630 34893
YP_007236488.1 NC_019913_p83 hypothetical protein phrog_6945 unknown function unknown function -1 49309 50118
YP_007236544.1 NC_019913_p142 hypothetical protein phrog_4323 unknown function unknown function 1 81184 81375
YP_007236535.1 NC_019913_p132 hypothetical protein phrog_6076 unknown function unknown function 1 76717 76968
YP_007236543.1 NC_019913_p141 hypothetical protein phrog_2267 unknown function unknown function 1 80845 81153
YP_007236556.1 NC_019913_p155 hypothetical protein phrog_4261 unknown function unknown function 1 86422 86751
YP_007236551.1 NC_019913_p150 hypothetical protein phrog_6913 unknown function unknown function 1 84485 84709
YP_007236493.1 NC_019913_p88 hypothetical protein phrog_4256 unknown function unknown function 1 52946 53488
YP_007236467.1 NC_019913_p59 structural protein phrog_205 tail sheath tail 1 31354 32640
YP_009047073.1 NC_019913_p93 hypothetical protein phrog_6310 unknown function unknown function 1 55120 55266
YP_007236481.1 NC_019913_p74 hypothetical protein phrog_4628 tail fiber assembly tail 1 44715 45062
YP_007236432.2 NC_019913_p22 ATPase phrog_2071 ATPase other -1 9578 9994
YP_007236480.1 NC_019913_p73 tail fiber protein phrog_2282 tail fiber protein tail 1 42636 44648
YP_007236515.1 NC_019913_p112 constituent protein phrog_221 metallo-phosphoesterase other 1 66650 67444
YP_007236476.1 NC_019913_p69 baseplate protein phrog_11 baseplate spike tail 1 39287 40027
YP_007236483.1 NC_019913_p76 endolysin phrog_2860 endolysin head and packaging 1 46592 47152
YP_007236479.1 NC_019913_p72 hypothetical protein phrog_587 structural protein head and packaging 1 41894 42625
YP_009047069.1 NC_019913_p46 hypothetical protein singleton unknown function unknown function 1 19945 20058
YP_007236495.1 NC_019913_p90 hypothetical protein phrog_6917 unknown function unknown function 1 54128 54292
YP_007236472.1 NC_019913_p65 tape measure protein phrog_991 tail length tape measure protein tail 1 34890 37256
YP_007236523.1 NC_019913_p120 ribonucleotide-diphosphate reductase beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 70901 71947
YP_007236542.1 NC_019913_p140 hypothetical protein phrog_6265 unknown function unknown function 1 80717 80845
YP_007236428.1 NC_019913_p18 hypothetical protein phrog_6997 unknown function unknown function -1 6531 6785
YP_007236416.1 NC_019913_p5 hypothetical protein phrog_7453 unknown function unknown function -1 1597 2283
YP_007236558.1 NC_019913_p157 hypothetical protein phrog_5680 unknown function unknown function 1 87375 87902
YP_007236513.1 NC_019913_p110 hypothetical protein phrog_4305 unknown function unknown function 1 66317 66484
YP_007236529.1 NC_019913_p126 hypothetical protein phrog_17860 unknown function unknown function 1 74883 75260
YP_007236485.1 NC_019913_p78 hypothetical protein phrog_4349 Rz-like spanin lysis 1 47396 47839
YP_007236441.1 NC_019913_p31 hypothetical protein phrog_2686 unknown function unknown function -1 14020 14484
YP_007236525.1 NC_019913_p122 hypothetical protein phrog_343 unknown function unknown function 1 73834 74136
YP_007236466.1 NC_019913_p58 structural protein phrog_4087 unknown function unknown function 1 30778 31341
YP_007236435.1 NC_019913_p25 hypothetical protein phrog_2339 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 11338 11649
YP_007236433.1 NC_019913_p23 RNA ligase 1 and tail attachment protein phrog_562 RNA ligase and tail fiber protein attachment catalyst tail -1 10005 10922
YP_007236509.1 NC_019913_p106 hypothetical protein phrog_1985 HNH endonuclease DNA, RNA and nucleotide metabolism 1 64701 65264
YP_007236502.1 NC_019913_p99 hypothetical protein phrog_3878 unknown function unknown function 1 60664 61062